Wall clock time and date at job start Mon Mar 30 2020 05:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47057 * 2 1 4 4 C 1.46495 * 120.00251 * 262.95474 * 3 2 1 5 5 C 1.50692 * 109.47234 * 269.99673 * 4 3 2 6 6 H 1.08000 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00223 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99798 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00199 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47123 * 119.99884 * 9 7 5 12 12 H 1.48496 * 109.47069 * 239.99618 * 9 7 5 13 13 C 1.34777 * 119.99634 * 82.94985 * 3 2 1 14 14 O 1.21477 * 120.00085 * 183.22589 * 13 3 2 15 15 C 1.48470 * 120.00374 * 3.23492 * 13 3 2 16 16 C 1.39504 * 120.50783 * 173.27379 * 15 13 3 17 17 C 1.38775 * 118.42237 * 179.74628 * 16 15 13 18 18 N 1.32133 * 119.24565 * 0.25621 * 17 16 15 19 19 C 1.32570 * 120.96268 * 0.02562 * 18 17 16 20 20 N 1.38432 * 119.13859 * 180.02562 * 19 18 17 21 21 N 1.36599 * 120.00107 * 359.97438 * 20 19 18 22 22 N 1.32289 * 121.71850 * 0.02562 * 19 18 17 23 23 H 1.09003 * 109.46484 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47204 * 299.99250 * 1 2 3 25 25 H 1.08998 * 109.47416 * 59.99826 * 1 2 3 26 26 H 1.09004 * 109.47606 * 240.00639 * 2 1 3 27 27 H 1.08998 * 109.47416 * 120.00174 * 2 1 3 28 28 H 1.08998 * 109.47156 * 30.00017 * 4 3 2 29 29 H 1.09004 * 109.47002 * 149.99571 * 4 3 2 30 30 H 0.97000 * 119.99812 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.79024 * 0.03092 * 16 15 13 32 32 H 1.08002 * 120.37315 * 180.23327 * 17 16 15 33 33 H 0.97000 * 119.99900 * 179.97438 * 20 19 18 34 34 H 1.00900 * 111.00299 * 56.04605 * 21 20 19 35 35 H 1.00894 * 111.00135 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4092 2.0200 -1.2591 5 6 3.8726 1.7692 -1.5165 6 1 4.4534 1.1913 -0.8128 7 6 4.4702 2.2773 -2.6504 8 7 3.7628 2.9806 -3.5075 9 14 6.2841 1.9657 -2.9699 10 1 6.8492 1.1530 -1.8630 11 1 6.4423 1.2342 -4.2525 12 1 7.0029 3.2628 -3.0479 13 6 2.1078 2.0643 1.1584 14 8 2.4568 3.2278 1.1521 15 6 1.7802 1.3946 2.4424 16 6 2.0018 2.0444 3.6568 17 6 1.6749 1.3803 4.8306 18 7 1.1724 0.1601 4.7634 19 6 0.9782 -0.4342 3.5944 20 7 0.4490 -1.7130 3.5680 21 7 0.1345 -2.3464 4.7368 22 7 1.2771 0.1630 2.4525 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8199 1.6036 -2.0760 29 1 2.2307 3.0933 -1.1927 30 1 4.1832 3.3378 -4.3054 31 1 2.4137 3.0425 3.6826 32 1 1.8299 1.8552 5.7881 33 1 0.3014 -2.1595 2.7196 34 1 -0.5076 -1.7945 5.2857 35 1 -0.2390 -3.2668 4.5601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723317848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:09 Heat of formation + Delta-G solvation = 48.724615 kcal Electronic energy + Delta-G solvation = -20190.067063 eV Core-core repulsion = 17031.540127 eV Total energy + Delta-G solvation = -3158.526936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25034 -40.40058 -37.86108 -37.14965 -35.22686 -34.41597 -32.80482 -31.59863 -29.37179 -28.91006 -26.61851 -25.04895 -24.33971 -23.71099 -20.93449 -19.79584 -18.88827 -18.54839 -17.63477 -17.42311 -16.88572 -16.75605 -16.51202 -16.14664 -15.75335 -15.39871 -15.07942 -14.63273 -14.33094 -14.25901 -13.61072 -13.24111 -13.10802 -12.80326 -12.71519 -12.55747 -12.33775 -12.19012 -11.84217 -11.73895 -11.40857 -11.22053 -10.65986 -10.62814 -9.93604 -9.46849 -8.57101 -8.24076 -6.39365 -0.39210 0.18165 1.36681 1.38894 1.50943 1.53643 1.85665 2.14740 2.39368 2.91131 3.01873 3.06253 3.35364 3.67675 4.01236 4.25043 4.30222 4.50146 4.54561 4.68380 4.78729 4.96323 5.01316 5.10419 5.19398 5.24311 5.40628 5.56226 5.67615 5.78079 5.93462 6.02527 6.53347 6.60442 6.68515 6.70391 7.15881 7.33996 7.48270 8.83514 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.027094 B = 0.005172 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.178772 B = 5412.811184 C = 5687.226387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.099 3.901 3 N -0.576 5.576 4 C 0.258 3.742 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.268 1.268 12 H -0.279 1.279 13 C 0.545 3.455 14 O -0.575 6.575 15 C 0.168 3.832 16 C -0.239 4.239 17 C 0.207 3.793 18 N -0.548 5.548 19 C 0.550 3.450 20 N -0.538 5.538 21 N -0.594 5.594 22 N -0.538 5.538 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.026 0.974 29 H 0.004 0.996 30 H 0.269 0.731 31 H 0.155 0.845 32 H 0.219 0.781 33 H 0.426 0.574 34 H 0.349 0.651 35 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -11.551 16.245 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 N -0.305 5.305 4 C 0.137 3.863 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.193 1.193 12 H -0.204 1.204 13 C 0.331 3.669 14 O -0.455 6.455 15 C 0.020 3.980 16 C -0.266 4.266 17 C 0.038 3.962 18 N -0.271 5.271 19 C 0.192 3.808 20 N -0.268 5.268 21 N -0.224 5.224 22 N -0.266 5.266 23 H 0.110 0.890 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.173 0.827 32 H 0.235 0.765 33 H 0.268 0.732 34 H 0.165 0.835 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.540 -11.891 16.275 21.891 hybrid contribution 0.099 0.871 -1.386 1.640 sum -8.441 -11.019 14.889 20.356 Atomic orbital electron populations 1.21901 0.94587 1.02805 1.00144 1.22179 0.95449 0.80899 1.03790 1.48237 1.60203 1.15212 1.06835 1.18888 0.94705 0.92506 0.80184 1.21670 0.95602 1.34255 1.06825 0.93064 1.25842 1.03262 0.94300 0.95428 1.70055 1.38237 1.35900 1.12359 0.85336 0.78787 0.78122 0.78367 1.19355 1.19300 1.20420 1.18426 0.78750 0.85744 0.83957 1.90710 1.50019 1.17870 1.86914 1.21116 0.93303 0.89661 0.93926 1.22735 1.06870 1.04343 0.92698 1.23677 0.86005 0.87294 0.99234 1.67928 1.19979 1.12230 1.27004 1.19274 0.89399 0.87340 0.84832 1.42359 1.66580 1.11896 1.05960 1.59802 1.52789 1.04875 1.04924 1.68168 1.20046 1.10102 1.28278 0.89042 0.93477 0.94874 0.91949 0.86491 0.95563 0.97765 0.92251 0.82723 0.76504 0.73184 0.83503 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.59 71.98 0.69 -3.28 16 2 C 0.10 3.53 5.70 86.38 0.49 4.02 16 3 N -0.58 -26.65 2.47 -828.88 -2.05 -28.70 16 4 C 0.26 14.45 5.15 85.63 0.44 14.89 16 5 C -0.55 -32.25 9.39 25.60 0.24 -32.01 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.55 24.95 7.61 86.97 0.66 25.61 16 14 O -0.58 -30.73 16.00 -3.64 -0.06 -30.79 16 15 C 0.17 5.90 6.53 42.00 0.27 6.17 16 16 C -0.24 -6.84 9.71 22.70 0.22 -6.62 16 17 C 0.21 4.42 11.30 84.78 0.96 5.38 16 18 N -0.55 -13.04 9.78 -198.02 -1.94 -14.98 16 19 C 0.55 13.76 8.49 261.53 2.22 15.98 16 20 N -0.54 -9.45 6.63 -59.81 -0.40 -9.85 16 21 N -0.59 -7.66 10.02 37.02 0.37 -7.29 16 22 N -0.54 -15.93 4.62 -187.09 -0.86 -16.80 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 24 H 0.05 1.41 6.80 -2.39 -0.02 1.40 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 2.29 8.02 -2.38 -0.02 2.27 16 27 H 0.12 3.87 5.23 -2.51 -0.01 3.86 16 28 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 29 H 0.00 0.27 7.38 -2.39 -0.02 0.25 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.16 4.38 7.74 -2.91 -0.02 4.35 16 32 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.43 5.94 8.94 -215.50 -1.93 4.02 16 34 H 0.35 4.21 8.99 -210.56 -1.89 2.32 16 35 H 0.38 2.24 9.21 -210.56 -1.94 0.30 16 Total: -1.00 -76.97 303.46 -0.57 -77.54 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.60 Total: 8.25 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 6.66 Total: 31.25 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -4.59 Total: -133.72 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.06 Total: -30.79 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.97 -0.57 -77.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723317848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.260 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds