Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46979 * 2 1 4 4 C 1.50698 * 109.47365 * 119.99795 * 2 1 3 5 5 H 1.08000 * 120.00122 * 120.00192 * 4 2 1 6 6 C 1.37872 * 120.00271 * 300.00092 * 4 2 1 7 7 N 1.31521 * 120.00280 * 179.97438 * 6 4 2 8 8 Si 1.86809 * 119.99990 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47016 * 89.99610 * 8 6 4 10 10 H 1.48502 * 109.47007 * 209.99988 * 8 6 4 11 11 H 1.48497 * 109.46689 * 329.99849 * 8 6 4 12 12 N 1.46503 * 109.47165 * 240.00078 * 2 1 3 13 13 C 1.46501 * 120.00039 * 299.99811 * 12 2 1 14 14 C 1.34778 * 119.99842 * 120.00046 * 12 2 1 15 15 O 1.21478 * 120.00038 * 2.31780 * 14 12 2 16 16 C 1.48464 * 119.99521 * 182.32517 * 14 12 2 17 17 C 1.39513 * 120.50037 * 172.92293 * 16 14 12 18 18 C 1.38771 * 118.42383 * 180.27219 * 17 16 14 19 19 N 1.32145 * 119.24301 * 359.46670 * 18 17 16 20 20 C 1.32561 * 120.95878 * 0.56327 * 19 18 17 21 21 N 1.38434 * 119.14136 * 179.70360 * 20 19 18 22 22 N 1.36606 * 119.99486 * 359.97438 * 21 20 19 23 23 N 1.32285 * 121.72532 * 359.69133 * 20 19 18 24 24 H 1.08994 * 109.46885 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47169 * 60.00290 * 1 2 3 26 26 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 27 27 H 0.96994 * 119.99695 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47111 * 263.83894 * 13 12 2 29 29 H 1.08996 * 109.46822 * 23.83683 * 13 12 2 30 30 H 1.08993 * 109.47166 * 143.83601 * 13 12 2 31 31 H 1.08003 * 120.78849 * 359.97438 * 17 16 14 32 32 H 1.07998 * 120.37823 * 179.75191 * 18 17 16 33 33 H 0.96992 * 120.00548 * 179.97438 * 21 20 19 34 34 H 1.00894 * 110.99889 * 179.97438 * 22 21 20 35 35 H 1.00895 * 110.99859 * 303.95175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 2.1374 -0.8596 3.5566 8 14 0.6247 1.2791 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1215 1.1145 -1.8703 16 6 3.2454 -0.7195 -3.3210 17 6 3.9221 -0.0114 -4.3145 18 6 4.3202 -0.6923 -5.4563 19 7 4.0578 -1.9831 -5.5626 20 6 3.4126 -2.6292 -4.6016 21 7 3.1521 -3.9802 -4.7549 22 7 3.5584 -4.6300 -5.8858 23 7 3.0113 -2.0169 -3.4998 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.9028 -0.5283 4.4375 28 1 2.4688 -2.7350 -1.0686 29 1 0.7447 -2.3290 -0.8928 30 1 1.5166 -2.2590 -2.4951 31 1 4.1270 1.0428 -4.1999 32 1 4.8425 -0.1742 -6.2469 33 1 2.6812 -4.4653 -4.0595 34 1 3.2999 -5.6048 -5.8552 35 1 3.1892 -4.1834 -6.7117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723319485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = 82.738893 kcal Electronic energy + Delta-G solvation = -20147.771033 eV Core-core repulsion = 16990.719068 eV Total energy + Delta-G solvation = -3157.051966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12407 -39.01104 -37.03872 -35.63968 -33.97137 -32.53941 -31.82380 -30.28140 -28.11080 -26.34567 -25.40673 -24.92610 -23.53766 -21.45107 -19.27467 -18.88888 -17.61313 -16.83581 -16.52664 -16.13251 -15.64993 -15.56140 -15.21626 -14.93657 -14.36636 -14.03619 -13.80589 -13.07396 -12.94191 -12.35282 -12.22082 -11.94791 -11.84425 -11.74580 -11.18712 -10.86510 -10.66128 -10.52819 -10.15873 -9.83417 -9.71767 -9.58317 -9.31335 -8.73412 -8.63458 -7.85042 -7.67549 -6.14369 -4.15348 0.77945 1.15735 2.39374 3.22473 3.23976 3.36741 3.38777 3.54890 3.98902 4.06036 4.34776 4.40314 4.76419 5.04645 5.10873 5.18621 5.40937 5.74291 5.99195 6.06857 6.19925 6.23694 6.30304 6.37524 6.47514 6.65475 6.81274 6.88930 7.07353 7.25095 7.36131 7.49500 7.60150 8.11115 8.34211 8.43489 8.73035 8.88491 9.45728 10.98362 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.005164 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.844127 B = 5420.664111 C = 5888.319655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.558 5.558 13 C 0.085 3.915 14 C 0.553 3.447 15 O -0.538 6.538 16 C 0.190 3.810 17 C -0.235 4.235 18 C 0.188 3.812 19 N -0.547 5.547 20 C 0.560 3.440 21 N -0.550 5.550 22 N -0.589 5.589 23 N -0.534 5.534 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.266 0.734 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.419 0.581 34 H 0.357 0.643 35 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -4.945 -18.714 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.124 3.876 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.286 5.286 13 C -0.058 4.058 14 C 0.337 3.663 15 O -0.416 6.416 16 C 0.041 3.959 17 C -0.262 4.262 18 C 0.019 3.981 19 N -0.270 5.270 20 C 0.203 3.797 21 N -0.281 5.281 22 N -0.216 5.216 23 N -0.261 5.261 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.259 0.741 34 H 0.171 0.829 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.216 -5.241 -18.355 19.090 hybrid contribution -1.606 0.916 0.457 1.904 sum -1.822 -4.325 -17.897 18.502 Atomic orbital electron populations 1.22461 0.98801 1.01268 0.99361 1.19425 0.90179 0.95261 0.82722 0.91808 1.21127 1.32761 1.14271 0.88306 0.90240 1.24861 0.95673 0.96582 0.95569 1.69875 1.45165 1.40166 0.97962 0.86919 0.80415 0.83838 0.77556 1.20379 1.22075 1.18750 1.47842 1.46731 1.12548 1.21466 1.22142 1.00410 0.81186 1.02098 1.17822 0.80347 0.85817 0.82333 1.90744 1.57392 1.17010 1.76409 1.21624 0.91465 0.88212 0.94601 1.22603 1.03991 1.03820 0.95743 1.23010 0.91313 0.88306 0.95447 1.67788 1.17858 1.10314 1.31069 1.18992 0.88602 0.85847 0.86304 1.42357 1.63330 1.04756 1.17649 1.59854 1.61711 1.04151 0.95856 1.68372 1.24973 1.10772 1.21947 0.92976 0.94738 0.92361 0.92412 0.92958 0.91890 0.89240 0.82626 0.80989 0.74063 0.82864 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.66 37.16 0.32 -3.15 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.36 16 3 H 0.06 1.70 5.96 -51.93 -0.31 1.40 16 4 C -0.53 -14.74 8.95 -34.44 -0.31 -15.05 16 5 H 0.08 2.42 7.89 -52.49 -0.41 2.00 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -27.05 13.96 55.43 0.77 -26.27 16 8 Si 0.88 21.77 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.56 -11.99 2.75 -176.15 -0.48 -12.47 16 13 C 0.08 1.52 8.56 59.85 0.51 2.03 16 14 C 0.55 11.57 7.68 -12.04 -0.09 11.48 16 15 O -0.54 -12.67 15.77 5.38 0.08 -12.58 16 16 C 0.19 3.24 6.65 -82.65 -0.55 2.69 16 17 C -0.23 -3.28 9.71 -38.91 -0.38 -3.66 16 18 C 0.19 2.18 11.30 -17.22 -0.19 1.99 16 19 N -0.55 -7.21 9.79 -13.94 -0.14 -7.35 16 20 C 0.56 7.68 8.49 -322.95 -2.74 4.94 16 21 N -0.55 -5.72 6.63 29.74 0.20 -5.53 16 22 N -0.59 -4.79 10.02 60.35 0.60 -4.19 16 23 N -0.53 -8.24 6.25 -10.49 -0.07 -8.31 16 24 H 0.05 1.16 3.27 -51.93 -0.17 1.00 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.17 6.67 -51.93 -0.35 0.83 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.11 6.44 -51.93 -0.33 0.77 16 30 H 0.09 1.40 5.26 -51.95 -0.27 1.13 16 31 H 0.16 2.03 7.75 -52.48 -0.41 1.63 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.42 3.65 8.94 -185.16 -1.66 1.99 16 34 H 0.36 1.70 9.21 -181.37 -1.67 0.03 16 35 H 0.34 2.60 8.99 -181.37 -1.63 0.97 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -34.22 290.72 -10.13 -44.35 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.66 Total: 1.63 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.68 Total: 8.71 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.89 Total: -64.11 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.22 -10.13 -44.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723319485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.091 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds