Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46979 * 2 1 4 4 C 1.50698 * 109.47365 * 119.99795 * 2 1 3 5 5 H 1.08000 * 120.00122 * 120.00192 * 4 2 1 6 6 C 1.37872 * 120.00271 * 300.00092 * 4 2 1 7 7 N 1.31521 * 120.00280 * 179.97438 * 6 4 2 8 8 Si 1.86809 * 119.99990 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47016 * 89.99610 * 8 6 4 10 10 H 1.48502 * 109.47007 * 209.99988 * 8 6 4 11 11 H 1.48497 * 109.46689 * 329.99849 * 8 6 4 12 12 N 1.46503 * 109.47165 * 240.00078 * 2 1 3 13 13 C 1.46501 * 120.00039 * 299.99811 * 12 2 1 14 14 C 1.34778 * 119.99842 * 120.00046 * 12 2 1 15 15 O 1.21478 * 120.00038 * 2.31780 * 14 12 2 16 16 C 1.48464 * 119.99521 * 182.32517 * 14 12 2 17 17 C 1.39513 * 120.50037 * 172.92293 * 16 14 12 18 18 C 1.38771 * 118.42383 * 180.27219 * 17 16 14 19 19 N 1.32145 * 119.24301 * 359.46670 * 18 17 16 20 20 C 1.32561 * 120.95878 * 0.56327 * 19 18 17 21 21 N 1.38434 * 119.14136 * 179.70360 * 20 19 18 22 22 N 1.36606 * 119.99486 * 359.97438 * 21 20 19 23 23 N 1.32285 * 121.72532 * 359.69133 * 20 19 18 24 24 H 1.08994 * 109.46885 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47169 * 60.00290 * 1 2 3 26 26 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 27 27 H 0.96994 * 119.99695 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47111 * 263.83894 * 13 12 2 29 29 H 1.08996 * 109.46822 * 23.83683 * 13 12 2 30 30 H 1.08993 * 109.47166 * 143.83601 * 13 12 2 31 31 H 1.08003 * 120.78849 * 359.97438 * 17 16 14 32 32 H 1.07998 * 120.37823 * 179.75191 * 18 17 16 33 33 H 0.96992 * 120.00548 * 179.97438 * 21 20 19 34 34 H 1.00894 * 110.99889 * 179.97438 * 22 21 20 35 35 H 1.00895 * 110.99859 * 303.95175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 2.1374 -0.8596 3.5566 8 14 0.6247 1.2791 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1215 1.1145 -1.8703 16 6 3.2454 -0.7195 -3.3210 17 6 3.9221 -0.0114 -4.3145 18 6 4.3202 -0.6923 -5.4563 19 7 4.0578 -1.9831 -5.5626 20 6 3.4126 -2.6292 -4.6016 21 7 3.1521 -3.9802 -4.7549 22 7 3.5584 -4.6300 -5.8858 23 7 3.0113 -2.0169 -3.4998 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.9028 -0.5283 4.4375 28 1 2.4688 -2.7350 -1.0686 29 1 0.7447 -2.3290 -0.8928 30 1 1.5166 -2.2590 -2.4951 31 1 4.1270 1.0428 -4.1999 32 1 4.8425 -0.1742 -6.2469 33 1 2.6812 -4.4653 -4.0595 34 1 3.2999 -5.6048 -5.8552 35 1 3.1892 -4.1834 -6.7117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723319485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = 57.850735 kcal Electronic energy + Delta-G solvation = -20148.850265 eV Core-core repulsion = 16990.719068 eV Total energy + Delta-G solvation = -3158.131197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25535 -40.55483 -37.92865 -37.37857 -35.30219 -34.40263 -32.88463 -32.07835 -28.97240 -27.85735 -27.22525 -26.47950 -24.63219 -22.98823 -20.80576 -19.82962 -19.10618 -18.64237 -17.76094 -17.39067 -17.14792 -16.82538 -16.47967 -16.24442 -15.76631 -15.38379 -14.94147 -14.81602 -14.66875 -14.14207 -13.91577 -13.57074 -13.19974 -13.07474 -12.81062 -12.63196 -12.07269 -11.92154 -11.72679 -11.59542 -11.40825 -11.26581 -10.81110 -10.65831 -9.95208 -9.47265 -8.60163 -8.35892 -6.41867 -0.42621 0.16224 1.27057 1.36599 1.45707 1.50650 1.77712 2.05632 2.27642 2.88564 2.97421 2.99910 3.32784 3.65040 3.99808 4.24105 4.38131 4.43909 4.48695 4.56640 4.66260 4.75385 4.90267 4.98931 5.12088 5.23479 5.29228 5.44634 5.59886 5.65235 5.89173 6.16637 6.51541 6.55857 6.61005 6.65694 7.05599 7.25640 7.45084 8.80422 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.005164 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.844127 B = 5420.664111 C = 5888.319655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.227 3.773 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.039 0.961 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.944 3.056 9 H -0.251 1.251 10 H -0.294 1.294 11 H -0.258 1.258 12 N -0.569 5.569 13 C 0.093 3.907 14 C 0.547 3.453 15 O -0.574 6.574 16 C 0.166 3.834 17 C -0.234 4.234 18 C 0.207 3.793 19 N -0.548 5.548 20 C 0.550 3.450 21 N -0.540 5.540 22 N -0.593 5.593 23 N -0.549 5.549 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.269 0.731 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.221 0.779 33 H 0.425 0.575 34 H 0.377 0.623 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -4.958 -21.320 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.124 3.876 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.057 0.943 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.771 3.229 9 H -0.177 1.177 10 H -0.221 1.221 11 H -0.182 1.182 12 N -0.297 5.297 13 C -0.049 4.049 14 C 0.333 3.667 15 O -0.454 6.454 16 C 0.019 3.981 17 C -0.262 4.262 18 C 0.038 3.962 19 N -0.271 5.271 20 C 0.192 3.808 21 N -0.270 5.270 22 N -0.224 5.224 23 N -0.277 5.277 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.179 0.821 32 H 0.237 0.763 33 H 0.267 0.733 34 H 0.194 0.806 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.026 -5.339 -20.985 21.677 hybrid contribution -1.210 0.782 1.138 1.836 sum -2.235 -4.557 -19.847 20.485 Atomic orbital electron populations 1.22315 0.96073 1.02432 1.00279 1.19146 0.92223 0.93638 0.82564 0.94324 1.21294 1.32033 1.13130 0.90287 0.94258 1.25687 0.97125 0.99698 0.95073 1.70012 1.47019 1.42212 0.98651 0.85928 0.79775 0.79859 0.77385 1.17669 1.22148 1.18221 1.47907 1.47249 1.13707 1.20863 1.22229 0.99756 0.79154 1.03797 1.18429 0.79307 0.85613 0.83309 1.90699 1.58481 1.18638 1.77578 1.21082 0.93951 0.89246 0.93850 1.22759 1.03488 1.04150 0.95765 1.23745 0.89580 0.87655 0.95259 1.67942 1.17610 1.10931 1.30637 1.19239 0.88683 0.86954 0.85909 1.42416 1.62223 1.03812 1.18529 1.59804 1.62029 1.05289 0.95256 1.68112 1.26250 1.10233 1.23101 0.93476 0.92227 0.91144 0.92155 0.94337 0.91738 0.86576 0.82090 0.76296 0.73252 0.80644 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.39 8.66 71.98 0.62 -5.77 16 2 C 0.23 11.23 2.22 44.24 0.10 11.33 16 3 H 0.04 2.11 5.96 -2.38 -0.01 2.09 16 4 C -0.53 -30.60 8.95 25.60 0.23 -30.37 16 5 H 0.04 2.52 7.89 -2.91 -0.02 2.50 16 6 C 0.02 1.34 5.45 84.65 0.46 1.80 16 7 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 8 Si 0.94 44.98 24.37 68.60 1.67 46.65 16 9 H -0.25 -10.91 6.87 99.48 0.68 -10.23 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 12 N -0.57 -24.84 2.75 -829.51 -2.28 -27.12 16 13 C 0.09 3.34 8.56 127.77 1.09 4.44 16 14 C 0.55 23.25 7.68 86.97 0.67 23.92 16 15 O -0.57 -27.67 15.77 -3.65 -0.06 -27.73 16 16 C 0.17 5.56 6.65 42.00 0.28 5.84 16 17 C -0.23 -6.15 9.71 22.70 0.22 -5.93 16 18 C 0.21 4.12 11.30 84.77 0.96 5.08 16 19 N -0.55 -12.77 9.79 -198.02 -1.94 -14.71 16 20 C 0.55 13.94 8.49 261.53 2.22 16.16 16 21 N -0.54 -10.02 6.63 -59.81 -0.40 -10.42 16 22 N -0.59 -8.04 10.02 37.02 0.37 -7.67 16 23 N -0.55 -16.38 6.25 -187.10 -1.17 -17.55 16 24 H 0.05 2.00 3.27 -2.39 -0.01 1.99 16 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 2.73 6.67 -2.39 -0.02 2.71 16 27 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 2.26 6.44 -2.39 -0.02 2.24 16 30 H 0.12 3.56 5.26 -2.42 -0.01 3.55 16 31 H 0.16 3.99 7.75 -2.91 -0.02 3.97 16 32 H 0.22 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.43 6.60 8.94 -215.50 -1.93 4.67 16 34 H 0.38 2.56 9.21 -210.56 -1.94 0.62 16 35 H 0.35 4.27 8.99 -210.56 -1.89 2.38 16 Total: -1.00 -76.34 290.72 -1.32 -77.66 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.66 Total: 12.51 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 6.85 Total: 26.49 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -5.12 Total: -135.59 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.67 Total: 46.65 kcal Total: -76.34 -1.32 -77.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723319485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.508 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds