Wall clock time and date at job start Mon Mar 30 2020 04:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34962 * 116.99877 * 2 1 4 4 O 1.21680 * 119.99763 * 0.02562 * 3 2 1 5 5 C 1.46182 * 120.00551 * 179.97438 * 3 2 1 6 6 C 1.38316 * 125.99480 * 179.97438 * 5 3 2 7 7 C 1.39037 * 107.55956 * 180.02562 * 6 5 3 8 8 C 1.38428 * 107.69935 * 0.02562 * 7 6 5 9 9 C 1.46579 * 125.87073 * 179.97438 * 8 7 6 10 10 N 1.30108 * 119.99655 * 0.02682 * 9 8 7 11 11 N 1.40109 * 119.99594 * 180.02562 * 10 9 8 12 12 C 1.46498 * 119.99760 * 180.27498 * 11 10 9 13 13 H 1.08998 * 109.47386 * 329.72195 * 12 11 10 14 14 C 1.52999 * 109.47214 * 89.72111 * 12 11 10 15 15 C 1.50697 * 109.46790 * 209.72098 * 12 11 10 16 16 H 1.08003 * 120.00582 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99874 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00084 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99742 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47631 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46671 * 120.00694 * 19 17 15 22 22 H 1.48502 * 109.47334 * 240.00076 * 19 17 15 23 23 N 1.36695 * 108.25436 * 0.24092 * 8 7 6 24 24 H 0.97010 * 125.76408 * 179.72884 * 23 8 7 25 25 H 1.08993 * 109.47221 * 299.99589 * 1 2 3 26 26 H 1.09001 * 109.47373 * 59.99678 * 1 2 3 27 27 H 1.09000 * 109.46730 * 179.97438 * 1 2 3 28 28 H 1.08003 * 126.22162 * 359.97438 * 6 5 3 29 29 H 1.08001 * 126.14771 * 179.97438 * 7 6 5 30 30 H 1.07991 * 120.00241 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99794 * 359.97438 * 11 10 9 32 32 H 1.08999 * 109.47020 * 60.00304 * 14 12 11 33 33 H 1.09003 * 109.47035 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47195 * 299.99379 * 14 12 11 35 35 H 0.96999 * 120.00094 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3789 2.2230 0.0005 5 6 3.5015 1.2792 0.0006 6 6 4.2546 2.4394 0.0001 7 6 5.5948 2.0695 0.0003 8 6 5.6497 0.6863 0.0003 9 6 6.8706 -0.1249 0.0000 10 7 8.0359 0.4537 0.0002 11 7 9.2029 -0.3216 -0.0007 12 6 10.5151 0.3298 0.0056 13 1 10.4472 1.2887 -0.5081 14 6 10.9653 0.5559 1.4503 15 6 11.5154 -0.5487 -0.7006 16 1 11.2047 -1.4972 -1.1133 17 6 12.8271 -0.1411 -0.8208 18 7 13.2054 1.0140 -0.3188 19 14 14.0671 -1.2304 -1.6956 20 1 13.3943 -2.4680 -2.1655 21 1 14.6314 -0.5016 -2.8600 22 1 15.1614 -1.5872 -0.7572 23 7 4.3695 0.2070 -0.0054 24 1 4.1146 -0.7290 -0.0104 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8712 3.4491 -0.0011 29 1 6.4410 2.7407 -0.0003 30 1 6.8028 -1.2026 -0.0004 31 1 9.1420 -1.2897 -0.0011 32 1 11.0333 -0.4030 1.9640 33 1 11.9418 1.0402 1.4550 34 1 10.2418 1.1914 1.9611 35 1 14.1282 1.3006 -0.4031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:15 Heat of formation + Delta-G solvation = -3.758163 kcal Electronic energy + Delta-G solvation = -18569.728207 eV Core-core repulsion = 15376.632696 eV Total energy + Delta-G solvation = -3193.095511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.22299 -39.97819 -36.70646 -36.52010 -34.12782 -31.68539 -31.13110 -29.85756 -28.14627 -26.79671 -25.30871 -23.60836 -21.95301 -20.55593 -20.49649 -19.58964 -18.62169 -17.25685 -16.68995 -16.65692 -16.04233 -15.35519 -14.91785 -14.41608 -13.97449 -13.86686 -13.44192 -13.29203 -12.63805 -12.57530 -12.54957 -12.35415 -12.20724 -11.55744 -11.11780 -11.00953 -10.92231 -10.83978 -10.68394 -10.32751 -10.27860 -9.74492 -9.11836 -9.02384 -8.64456 -8.40062 -6.88293 -6.20803 -4.29626 0.97575 2.14842 2.49720 2.90393 3.10281 3.19245 3.27399 3.30114 3.47119 3.78247 4.30777 4.78611 4.86221 4.92176 5.00649 5.12162 5.23406 5.35101 5.36711 5.79880 5.99403 6.11342 6.27036 6.48761 6.71441 6.87710 6.91872 6.96127 7.05876 7.33606 7.49452 7.62875 7.68152 7.75607 8.02772 8.17981 8.76483 9.11352 9.37437 10.85160 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.051306 B = 0.002845 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.613248 B = 9839.406982 C =10101.948236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.537 3.463 4 O -0.506 6.506 5 C -0.063 4.063 6 C -0.084 4.084 7 C -0.187 4.187 8 C 0.152 3.848 9 C -0.014 4.014 10 N -0.165 5.165 11 N -0.611 5.611 12 C 0.295 3.705 13 H 0.046 0.954 14 C -0.152 4.152 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.525 5.525 24 H 0.422 0.578 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.105 0.895 31 H 0.371 0.629 32 H 0.026 0.974 33 H 0.092 0.908 34 H 0.015 0.985 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.835 -3.097 1.274 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.384 3.616 4 O -0.394 6.394 5 C -0.173 4.173 6 C -0.110 4.110 7 C -0.213 4.213 8 C 0.032 3.968 9 C -0.221 4.221 10 N 0.018 4.982 11 N -0.348 5.348 12 C 0.193 3.807 13 H 0.063 0.937 14 C -0.211 4.211 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.124 5.124 24 H 0.260 0.740 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.123 0.877 31 H 0.207 0.793 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.034 0.966 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.336 -1.878 1.287 18.477 hybrid contribution 0.073 -2.286 -0.416 2.325 sum -18.264 -4.164 0.871 18.752 Atomic orbital electron populations 1.22876 0.76654 1.03591 1.02537 1.86161 1.23560 1.33255 1.84967 1.19828 0.87104 0.81497 0.73129 1.90904 1.65522 1.35686 1.47334 1.19056 0.85877 0.88244 1.24170 1.21232 0.92378 0.96634 1.00757 1.21283 0.96685 0.92911 1.10374 1.18686 0.82411 0.92716 1.03018 1.22232 0.89052 0.95642 1.15177 1.74023 0.94303 1.27827 1.02000 1.49226 1.01061 1.05453 1.79051 1.18648 0.74608 0.94205 0.93256 0.93657 1.22217 1.02430 0.98930 0.97508 1.21235 0.93576 1.05313 1.37059 0.92088 1.24861 0.98110 0.95291 0.95340 1.69891 1.17901 1.19864 1.44504 0.86355 0.80885 0.80335 0.79305 1.19782 1.20768 1.20796 1.41969 1.04862 1.08577 1.56948 0.74018 0.92067 0.92070 0.88125 0.83199 0.82760 0.87749 0.79288 0.95453 0.88988 0.96633 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.45 101.05 1.06 1.34 16 2 O -0.36 -3.82 10.48 -41.21 -0.43 -4.25 16 3 C 0.54 6.91 7.91 33.92 0.27 7.17 16 4 O -0.51 -7.57 16.65 -19.40 -0.32 -7.89 16 5 C -0.06 -0.81 7.07 -81.89 -0.58 -1.39 16 6 C -0.08 -1.11 10.59 -39.26 -0.42 -1.53 16 7 C -0.19 -2.68 10.54 -39.21 -0.41 -3.10 16 8 C 0.15 2.14 7.10 -82.27 -0.58 1.55 16 9 C -0.01 -0.21 11.05 -14.92 -0.16 -0.37 16 10 N -0.17 -3.14 11.22 32.00 0.36 -2.78 16 11 N -0.61 -12.67 6.10 -5.88 -0.04 -12.70 16 12 C 0.29 7.17 3.23 -69.08 -0.22 6.95 16 13 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.15 -3.58 9.29 37.16 0.35 -3.23 16 15 C -0.53 -13.77 8.74 -34.44 -0.30 -14.07 16 16 H 0.06 1.54 7.79 -52.48 -0.41 1.13 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -23.97 11.32 55.43 0.63 -23.34 16 19 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 N -0.53 -6.16 6.17 -5.95 -0.04 -6.20 16 24 H 0.42 3.75 8.96 -40.82 -0.37 3.38 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.11 1.36 8.03 -52.49 -0.42 0.94 16 31 H 0.37 7.02 8.58 -182.59 -1.57 5.45 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -29.26 316.74 -6.79 -36.04 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.59 Total: 6.18 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.11 Total: -5.02 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.91 Total: -45.02 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.76 Total: -12.15 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.26 -6.79 -36.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.286 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds