Wall clock time and date at job start Mon Mar 30 2020 04:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34962 * 116.99877 * 2 1 4 4 O 1.21680 * 119.99763 * 0.02562 * 3 2 1 5 5 C 1.46182 * 120.00551 * 179.97438 * 3 2 1 6 6 C 1.38316 * 125.99480 * 179.97438 * 5 3 2 7 7 C 1.39037 * 107.55956 * 180.02562 * 6 5 3 8 8 C 1.38428 * 107.69935 * 0.02562 * 7 6 5 9 9 C 1.46579 * 125.87073 * 179.97438 * 8 7 6 10 10 N 1.30108 * 119.99655 * 0.02682 * 9 8 7 11 11 N 1.40109 * 119.99594 * 180.02562 * 10 9 8 12 12 C 1.46498 * 119.99760 * 180.27498 * 11 10 9 13 13 H 1.08998 * 109.47386 * 329.72195 * 12 11 10 14 14 C 1.52999 * 109.47214 * 89.72111 * 12 11 10 15 15 C 1.50697 * 109.46790 * 209.72098 * 12 11 10 16 16 H 1.08003 * 120.00582 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99874 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00084 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99742 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47631 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46671 * 120.00694 * 19 17 15 22 22 H 1.48502 * 109.47334 * 240.00076 * 19 17 15 23 23 N 1.36695 * 108.25436 * 0.24092 * 8 7 6 24 24 H 0.97010 * 125.76408 * 179.72884 * 23 8 7 25 25 H 1.08993 * 109.47221 * 299.99589 * 1 2 3 26 26 H 1.09001 * 109.47373 * 59.99678 * 1 2 3 27 27 H 1.09000 * 109.46730 * 179.97438 * 1 2 3 28 28 H 1.08003 * 126.22162 * 359.97438 * 6 5 3 29 29 H 1.08001 * 126.14771 * 179.97438 * 7 6 5 30 30 H 1.07991 * 120.00241 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99794 * 359.97438 * 11 10 9 32 32 H 1.08999 * 109.47020 * 60.00304 * 14 12 11 33 33 H 1.09003 * 109.47035 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47195 * 299.99379 * 14 12 11 35 35 H 0.96999 * 120.00094 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3789 2.2230 0.0005 5 6 3.5015 1.2792 0.0006 6 6 4.2546 2.4394 0.0001 7 6 5.5948 2.0695 0.0003 8 6 5.6497 0.6863 0.0003 9 6 6.8706 -0.1249 0.0000 10 7 8.0359 0.4537 0.0002 11 7 9.2029 -0.3216 -0.0007 12 6 10.5151 0.3298 0.0056 13 1 10.4472 1.2887 -0.5081 14 6 10.9653 0.5559 1.4503 15 6 11.5154 -0.5487 -0.7006 16 1 11.2047 -1.4972 -1.1133 17 6 12.8271 -0.1411 -0.8208 18 7 13.2054 1.0140 -0.3188 19 14 14.0671 -1.2304 -1.6956 20 1 13.3943 -2.4680 -2.1655 21 1 14.6314 -0.5016 -2.8600 22 1 15.1614 -1.5872 -0.7572 23 7 4.3695 0.2070 -0.0054 24 1 4.1146 -0.7290 -0.0104 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8712 3.4491 -0.0011 29 1 6.4410 2.7407 -0.0003 30 1 6.8028 -1.2026 -0.0004 31 1 9.1420 -1.2897 -0.0011 32 1 11.0333 -0.4030 1.9640 33 1 11.9418 1.0402 1.4550 34 1 10.2418 1.1914 1.9611 35 1 14.1282 1.3006 -0.4031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:12 Heat of formation + Delta-G solvation = -22.446961 kcal Electronic energy + Delta-G solvation = -18570.538614 eV Core-core repulsion = 15376.632696 eV Total energy + Delta-G solvation = -3193.905918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.27148 -40.96012 -38.08835 -37.62928 -35.86343 -33.39177 -32.20243 -31.15155 -29.27760 -27.95349 -27.26087 -24.81825 -23.07804 -22.26668 -21.60534 -20.76647 -19.71091 -18.67173 -17.95926 -17.54490 -17.42955 -16.96513 -16.39028 -15.46261 -15.37303 -14.86833 -14.71049 -14.47938 -14.32679 -14.04978 -13.65523 -13.45114 -13.32000 -13.02522 -12.90002 -12.70283 -12.46988 -12.20966 -12.06762 -11.86051 -11.80077 -11.17014 -10.93852 -10.57833 -10.07557 -9.72704 -8.33800 -8.15478 -6.33159 -0.12615 0.98324 1.44046 1.44972 1.52144 1.57339 1.83085 2.04364 2.27147 2.35763 2.56415 3.13157 3.81142 3.92421 4.23690 4.26924 4.31305 4.34627 4.60461 4.72091 4.73673 4.88166 5.02396 5.14480 5.15696 5.19696 5.31378 5.51397 5.63920 5.79041 5.83698 5.91522 6.17102 6.37920 6.40702 6.65458 6.84654 7.38144 7.70799 8.88665 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.051306 B = 0.002845 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.613248 B = 9839.406982 C =10101.948236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.529 6.529 5 C -0.054 4.054 6 C -0.094 4.094 7 C -0.191 4.191 8 C 0.132 3.868 9 C 0.032 3.968 10 N -0.216 5.216 11 N -0.629 5.629 12 C 0.306 3.694 13 H 0.006 0.994 14 C -0.138 4.138 15 C -0.546 4.546 16 H 0.063 0.937 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.278 1.278 23 N -0.503 5.503 24 H 0.437 0.563 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.378 0.622 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.709 -4.835 1.042 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.390 3.610 4 O -0.419 6.419 5 C -0.166 4.166 6 C -0.120 4.120 7 C -0.218 4.218 8 C 0.011 3.989 9 C -0.177 4.177 10 N -0.029 5.029 11 N -0.367 5.367 12 C 0.202 3.798 13 H 0.023 0.977 14 C -0.198 4.198 15 C -0.585 4.585 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.552 5.552 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.203 1.203 23 N -0.102 5.102 24 H 0.279 0.721 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.215 0.785 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.231 -3.661 1.058 20.587 hybrid contribution 0.272 -1.725 -0.338 1.779 sum -19.959 -5.386 0.719 20.685 Atomic orbital electron populations 1.23229 0.74737 1.05922 1.02628 1.86155 1.25363 1.31658 1.84261 1.19758 0.86896 0.81864 0.72526 1.90902 1.65964 1.36679 1.48353 1.19192 0.86341 0.88394 1.22703 1.21396 0.91976 0.97577 1.01090 1.21368 0.97061 0.93332 1.09997 1.18516 0.82808 0.92550 1.05072 1.22688 0.88372 0.97308 1.09352 1.74039 0.94726 1.28286 1.05815 1.48593 1.00567 1.05374 1.82141 1.18177 0.76493 0.92446 0.92679 0.97653 1.22037 1.01198 0.98910 0.97624 1.21542 0.94254 1.05539 1.37136 0.91848 1.25690 0.99959 0.96495 0.96022 1.70017 1.18306 1.21348 1.45552 0.85342 0.78468 0.78721 0.78052 1.19008 1.20751 1.20338 1.41857 1.03718 1.09288 1.55386 0.72136 0.91996 0.92027 0.84702 0.82152 0.83585 0.84787 0.78488 0.94950 0.91309 0.96068 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.45 113.37 1.18 1.52 16 2 O -0.36 -6.49 10.48 -58.79 -0.62 -7.11 16 3 C 0.54 12.69 7.91 69.88 0.55 13.25 16 4 O -0.53 -14.92 16.65 19.25 0.32 -14.60 16 5 C -0.05 -1.28 7.07 40.26 0.28 -0.99 16 6 C -0.09 -2.38 10.59 22.48 0.24 -2.14 16 7 C -0.19 -5.33 10.54 22.51 0.24 -5.10 16 8 C 0.13 3.45 7.10 40.61 0.29 3.74 16 9 C 0.03 0.94 11.05 87.13 0.96 1.90 16 10 N -0.22 -8.18 11.22 -52.68 -0.59 -8.78 16 11 N -0.63 -26.29 6.10 -172.53 -1.05 -27.35 16 12 C 0.31 15.32 3.23 44.24 0.14 15.47 16 13 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 14 C -0.14 -6.70 9.29 71.98 0.67 -6.03 16 15 C -0.55 -28.60 8.74 25.60 0.22 -28.37 16 16 H 0.06 3.21 7.79 -2.91 -0.02 3.18 16 17 C 0.02 0.99 5.30 84.66 0.45 1.44 16 18 N -0.91 -50.69 11.32 21.45 0.24 -50.45 16 19 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 N -0.50 -10.41 6.17 -172.73 -1.07 -11.47 16 24 H 0.44 6.23 8.96 -92.70 -0.83 5.39 16 25 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 26 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 27 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.14 3.05 8.03 -2.91 -0.02 3.02 16 31 H 0.38 14.17 8.58 -213.31 -1.83 12.34 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -63.48 316.74 2.96 -60.52 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -1.54 Total: 21.02 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.23 Total: -5.33 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -2.47 Total: -98.04 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.30 Total: -21.70 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -63.48 2.96 -60.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.071 kcal (2) G-P(sol) polarization free energy of solvation -63.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds