Wall clock time and date at job start Mon Mar 30 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99685 * 2 1 4 4 H 1.48498 * 109.47057 * 269.99221 * 3 2 1 5 5 H 1.48502 * 109.47567 * 29.99651 * 3 2 1 6 6 H 1.48503 * 109.47154 * 149.99675 * 3 2 1 7 7 C 1.38810 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99949 * 202.45192 * 7 2 1 9 9 N 1.36938 * 119.99971 * 22.18192 * 7 2 1 10 10 C 1.46499 * 120.00018 * 35.14239 * 9 7 2 11 11 N 1.46503 * 109.46981 * 90.00457 * 10 9 7 12 12 N 1.40017 * 126.26287 * 75.02264 * 11 10 9 13 13 N 1.23646 * 109.32019 * 179.97438 * 12 11 10 14 14 N 1.40017 * 109.31805 * 0.02562 * 13 12 11 15 15 C 1.46495 * 126.26283 * 179.97438 * 14 13 12 16 16 C 1.53004 * 117.49897 * 8.77020 * 15 14 13 17 17 C 1.53007 * 117.49867 * 300.11647 * 15 14 13 18 18 C 1.35054 * 107.47822 * 359.73944 * 14 13 12 19 19 O 1.21827 * 126.79614 * 180.26257 * 18 14 13 20 20 C 1.46494 * 119.99815 * 215.14707 * 9 7 2 21 21 C 1.53003 * 117.50152 * 9.45582 * 20 9 7 22 22 C 1.53001 * 117.50116 * 300.79261 * 20 9 7 23 23 H 0.96998 * 120.00479 * 354.66176 * 1 2 3 24 24 H 1.08997 * 109.46846 * 210.00530 * 10 9 7 25 25 H 1.09001 * 109.46970 * 330.00677 * 10 9 7 26 26 H 1.08998 * 115.55528 * 154.44582 * 15 14 13 27 27 H 1.09008 * 117.49631 * 0.02562 * 16 15 14 28 28 H 1.09001 * 117.49927 * 145.01335 * 16 15 14 29 29 H 1.09001 * 117.49424 * 214.97606 * 17 15 14 30 30 H 1.08996 * 117.49683 * 359.96532 * 17 15 14 31 31 H 1.09007 * 115.55297 * 155.12367 * 20 9 7 32 32 H 1.08998 * 117.49469 * 359.97438 * 21 20 9 33 33 H 1.08997 * 117.50189 * 145.02302 * 21 20 9 34 34 H 1.08999 * 117.50131 * 214.98213 * 22 20 9 35 35 H 1.09003 * 117.49663 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0289 -1.2373 0.3578 9 7 1.4016 -2.3444 -0.4467 10 6 0.4496 -2.2800 -1.5583 11 7 1.1646 -2.4580 -2.8245 12 7 1.6697 -3.6629 -3.3281 13 7 2.2143 -3.4543 -4.4184 14 7 2.1179 -2.0930 -4.7314 15 6 2.6385 -1.4419 -5.9360 16 6 3.1742 -2.3428 -7.0506 17 6 4.1446 -1.5288 -6.1912 18 6 1.4524 -1.4909 -3.7222 19 8 1.1699 -0.3089 -3.6372 20 6 1.7025 -3.6307 0.1865 21 6 2.5267 -3.6080 1.4754 22 6 3.1579 -4.1024 0.1714 23 1 -0.4851 0.8363 0.0781 24 1 -0.2934 -3.0696 -1.4464 25 1 -0.0476 -1.3100 -1.5551 26 1 2.1302 -0.5240 -6.2314 27 1 3.1388 -3.4201 -6.8878 28 1 3.0184 -2.0175 -8.0793 29 1 4.6269 -0.6682 -6.6548 30 1 4.7481 -2.0699 -5.4625 31 1 0.9262 -4.3908 0.0989 32 1 2.8454 -2.6361 1.8519 33 1 2.2929 -4.3535 2.2355 34 1 3.3391 -5.1728 0.0741 35 1 3.8915 -3.4558 -0.3102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808146269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:33 Heat of formation + Delta-G solvation = 145.542063 kcal Electronic energy + Delta-G solvation = -20747.645523 eV Core-core repulsion = 17593.316907 eV Total energy + Delta-G solvation = -3154.328616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.56201 -39.07069 -38.89767 -38.27760 -35.83387 -34.31607 -33.11097 -32.05674 -27.94875 -25.88304 -25.46694 -23.49196 -23.02982 -22.98329 -22.25907 -21.80480 -19.11893 -18.51897 -17.76628 -17.73937 -17.01830 -16.91992 -16.35797 -15.79084 -15.60952 -14.98673 -14.87872 -14.46895 -13.90700 -13.88207 -13.62953 -13.21772 -12.96825 -12.88908 -12.78322 -12.54640 -12.44510 -12.25980 -12.07090 -11.82763 -11.65507 -11.35255 -11.10224 -10.73624 -10.58863 -9.99678 -8.84537 -8.17224 -5.68676 0.28468 0.40395 1.30699 1.41657 1.43375 1.44717 2.08982 2.32659 2.70418 3.04239 3.15829 3.30183 3.38784 3.67647 3.92261 3.99769 4.24211 4.26190 4.39551 4.44134 4.57075 4.64625 4.71077 4.91257 4.93341 5.00034 5.06905 5.18168 5.25704 5.28401 5.39660 5.48930 5.54024 6.21510 6.81507 6.85444 6.99179 7.52151 7.99139 8.86590 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.008316 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.536822 B = 3366.110810 C = 4255.245192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.003 4.003 3 Si 0.949 3.051 4 H -0.298 1.298 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.287 4.287 8 H 0.058 0.942 9 N -0.533 5.533 10 C 0.367 3.633 11 N -0.456 5.456 12 N 0.014 4.986 13 N 0.003 4.997 14 N -0.449 5.449 15 C 0.059 3.941 16 C -0.134 4.134 17 C -0.176 4.176 18 C 0.624 3.376 19 O -0.576 6.576 20 C 0.092 3.908 21 C -0.178 4.178 22 C -0.199 4.199 23 H 0.263 0.737 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.149 0.851 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -7.270 -9.727 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.204 4.204 3 Si 0.777 3.223 4 H -0.226 1.226 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.416 4.416 8 H 0.075 0.925 9 N -0.248 5.248 10 C 0.161 3.839 11 N -0.294 5.294 12 N 0.017 4.983 13 N 0.006 4.994 14 N -0.279 5.279 15 C -0.043 4.043 16 C -0.171 4.171 17 C -0.215 4.215 18 C 0.322 3.678 19 O -0.448 6.448 20 C -0.014 4.014 21 C -0.216 4.216 22 C -0.239 4.239 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.136 0.864 26 H 0.166 0.834 27 H 0.125 0.875 28 H 0.161 0.839 29 H 0.151 0.849 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.497 -7.376 -9.648 12.950 hybrid contribution 0.249 1.955 0.327 1.998 sum 4.746 -5.421 -9.321 11.781 Atomic orbital electron populations 1.69759 1.06455 1.27359 1.50418 1.25638 0.95757 1.01142 0.97834 0.85575 0.79092 0.80542 0.77105 1.22592 1.20362 1.19061 1.18992 0.95446 0.86123 1.41070 0.92461 1.44095 1.48133 1.03191 1.29349 1.21901 0.86980 1.04213 0.70852 1.53769 1.51779 1.02820 1.21020 1.79385 1.05768 1.10162 1.03012 1.79359 1.14507 0.96686 1.08891 1.50137 1.52445 1.04564 1.20791 1.22118 0.97771 0.99785 0.84656 1.23484 0.98877 0.98761 0.95984 1.23569 0.90645 1.04258 1.02981 1.17767 0.81667 0.86240 0.82164 1.91047 1.61620 1.12978 1.79172 1.21591 0.93000 0.88754 0.98091 1.23105 1.04971 1.02138 0.91393 1.23232 0.98337 1.00626 1.01724 0.92747 0.88856 0.86439 0.83410 0.87469 0.83871 0.84945 0.89567 0.86277 0.90710 0.86885 0.87161 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.82 11.34 21.65 0.25 -50.58 16 2 C 0.00 -0.16 4.96 84.86 0.42 0.26 16 3 Si 0.95 46.57 29.61 68.60 2.03 48.60 16 4 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.29 -15.43 8.27 84.03 0.69 -14.73 16 8 H 0.06 3.16 7.07 -2.91 -0.02 3.14 16 9 N -0.53 -25.54 3.03 -689.68 -2.09 -27.63 16 10 C 0.37 17.20 6.67 170.96 1.14 18.34 16 11 N -0.46 -20.31 3.86 -487.82 -1.88 -22.20 16 12 N 0.01 0.55 13.55 37.02 0.50 1.05 16 13 N 0.00 0.11 12.98 37.02 0.48 0.59 16 14 N -0.45 -16.69 3.95 -456.92 -1.80 -18.50 16 15 C 0.06 1.62 6.84 45.00 0.31 1.93 16 16 C -0.13 -2.41 10.19 30.62 0.31 -2.09 16 17 C -0.18 -3.76 10.46 30.62 0.32 -3.44 16 18 C 0.62 29.07 8.76 178.88 1.57 30.64 16 19 O -0.58 -31.15 17.67 -4.75 -0.08 -31.24 16 20 C 0.09 3.65 6.59 44.99 0.30 3.95 16 21 C -0.18 -6.44 9.78 30.62 0.30 -6.15 16 22 C -0.20 -7.11 10.24 30.62 0.31 -6.80 16 23 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 24 H 0.09 3.83 8.05 -2.39 -0.02 3.81 16 25 H 0.12 6.41 5.11 -2.39 -0.01 6.40 16 26 H 0.15 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.11 2.04 7.84 -2.38 -0.02 2.02 16 28 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.13 2.13 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.12 4.11 8.12 -2.38 -0.02 4.09 16 32 H 0.07 3.12 6.71 -2.39 -0.02 3.11 16 33 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -66.49 308.28 4.18 -62.32 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.11 Total: 15.68 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 5.67 Total: 21.91 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.55 Total: -117.27 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.08 Total: -31.24 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -66.49 4.18 -62.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808146269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.859 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds