Wall clock time and date at job start Mon Mar 30 2020 04:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46789 * 2 1 4 4 N 1.28520 * 124.43480 * 90.02969 * 3 2 1 5 5 C 1.31121 * 109.06913 * 179.97438 * 4 3 2 6 6 C 1.40965 * 105.77688 * 0.23630 * 5 4 3 7 7 C 1.47673 * 127.24555 * 179.75654 * 6 5 4 8 8 O 1.21475 * 120.00167 * 354.97509 * 7 6 5 9 9 O 1.34720 * 119.99991 * 174.97397 * 7 6 5 10 10 C 1.45205 * 116.99909 * 185.19440 * 9 7 6 11 11 C 1.52995 * 109.46813 * 184.20595 * 10 9 7 12 12 C 1.50701 * 115.55147 * 64.76828 * 11 10 9 13 13 H 1.07999 * 119.99816 * 266.67592 * 12 11 10 14 14 C 1.37872 * 119.99811 * 86.68353 * 12 11 10 15 15 N 1.31512 * 119.99868 * 178.71837 * 14 12 11 16 16 Si 1.86806 * 120.00149 * 358.71743 * 14 12 11 17 17 H 1.48495 * 109.47070 * 90.85602 * 16 14 12 18 18 H 1.48502 * 109.46942 * 210.85692 * 16 14 12 19 19 H 1.48494 * 109.46989 * 330.85217 * 16 14 12 20 20 C 1.53005 * 117.49827 * 279.09804 * 11 10 9 21 21 C 1.53004 * 117.49743 * 210.43913 * 11 10 9 22 22 N 1.28583 * 124.43748 * 269.98157 * 3 2 1 23 23 H 1.09003 * 109.47598 * 299.99786 * 1 2 3 24 24 H 1.09000 * 109.47580 * 59.99515 * 1 2 3 25 25 H 1.08996 * 109.47327 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47330 * 240.00609 * 2 1 3 27 27 H 1.08994 * 109.47343 * 120.00148 * 2 1 3 28 28 H 1.08006 * 127.10890 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46840 * 304.20662 * 10 9 7 30 30 H 1.09001 * 109.46631 * 64.20388 * 10 9 7 31 31 H 0.97003 * 120.00360 * 179.97438 * 15 14 12 32 32 H 1.09001 * 117.49816 * 359.97438 * 20 11 10 33 33 H 1.09001 * 117.50133 * 145.02525 * 20 11 10 34 34 H 1.08994 * 117.49907 * 214.97925 * 21 11 10 35 35 H 1.09001 * 117.49744 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2610 2.0663 1.0600 5 6 2.6827 3.2582 0.7126 6 6 2.6805 3.2698 -0.6970 7 6 3.0677 4.3865 -1.5823 8 8 3.3511 5.4680 -1.1073 9 8 3.1068 4.2058 -2.9168 10 6 3.6067 5.3094 -3.7171 11 6 3.4786 4.9619 -5.2015 12 6 2.0700 4.7965 -5.7111 13 1 1.6152 3.8172 -5.7331 14 6 1.3620 5.8954 -6.1494 15 7 0.1420 5.7476 -6.6176 16 14 2.1357 7.5942 -6.0782 17 1 2.8398 7.8714 -7.3559 18 1 1.0757 8.6124 -5.8661 19 1 3.1066 7.6493 -4.9559 20 6 4.5608 4.0708 -5.8145 21 6 4.5104 5.5615 -6.1590 22 7 2.2609 2.0667 -1.0605 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.9683 4.0658 1.3704 29 1 3.0257 6.2063 -3.5023 30 1 4.6543 5.4885 -3.4748 31 1 -0.3563 6.5208 -6.9257 32 1 5.3643 3.7325 -5.1602 33 1 4.2541 3.3652 -6.5866 34 1 4.1706 5.8359 -7.1576 35 1 5.2803 6.2038 -5.7314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815964805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:26 Heat of formation + Delta-G solvation = 55.272388 kcal Electronic energy + Delta-G solvation = -19731.931445 eV Core-core repulsion = 16541.395691 eV Total energy + Delta-G solvation = -3190.535754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.70539 -39.71696 -37.11502 -35.46718 -35.00583 -32.71561 -32.08116 -30.64071 -27.50911 -25.66254 -24.93154 -23.82071 -21.71606 -21.60962 -20.55884 -19.15173 -17.68471 -17.18008 -16.88082 -16.57576 -15.69030 -15.67193 -15.13010 -14.74863 -14.38082 -13.90398 -13.22207 -12.89339 -12.59294 -12.58337 -12.44136 -12.17104 -11.95452 -11.69626 -11.13324 -11.00480 -10.88291 -10.59470 -10.47030 -10.43390 -10.18004 -9.97486 -9.63121 -9.54142 -9.01829 -8.57657 -8.56736 -6.09607 -4.12386 1.26994 1.86048 2.00711 3.02604 3.23071 3.28964 3.39064 3.41670 3.91048 4.41800 4.53541 4.58091 4.79257 4.80940 4.91568 5.15025 5.18732 5.31956 5.39874 5.62981 5.66668 5.77183 5.86941 5.96721 5.98685 6.12477 6.26078 6.43098 6.45520 6.68123 6.87153 7.05093 7.08734 7.70654 8.00210 8.23589 8.52505 8.96234 9.52434 11.02343 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.005112 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.854171 B = 5476.488327 C = 5765.683917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 N -0.142 5.142 4 N -0.295 5.295 5 C 0.037 3.963 6 C -0.027 4.027 7 C 0.553 3.447 8 O -0.508 6.508 9 O -0.313 6.313 10 C 0.106 3.894 11 C -0.006 4.006 12 C -0.480 4.480 13 H 0.081 0.919 14 C 0.076 3.924 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.292 1.292 19 H -0.260 1.260 20 C -0.172 4.172 21 C -0.190 4.190 22 N -0.214 5.214 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.210 0.790 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -9.330 13.110 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 N -0.046 5.046 4 N -0.133 5.133 5 C -0.146 4.146 6 C -0.188 4.188 7 C 0.394 3.606 8 O -0.395 6.395 9 O -0.226 6.226 10 C 0.033 3.967 11 C -0.007 4.007 12 C -0.517 4.517 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.533 5.533 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.185 1.185 20 C -0.209 4.209 21 C -0.227 4.227 22 N -0.062 5.062 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.226 0.774 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.098 -10.166 13.098 17.079 hybrid contribution 0.585 2.011 -0.004 2.095 sum 4.682 -8.155 13.094 16.121 Atomic orbital electron populations 1.22208 0.92755 1.04086 1.04114 1.22130 0.96397 0.73928 1.06150 1.48389 1.43380 1.13624 0.99228 1.73967 1.18020 1.05487 1.15869 1.24827 1.01407 0.95329 0.93085 1.22052 1.10584 0.92836 0.93343 1.19323 0.74211 0.84795 0.82300 1.90827 1.46533 1.25136 1.77036 1.86683 1.75141 1.44959 1.15816 1.23174 0.96225 0.87005 0.90309 1.19320 0.93199 1.00802 0.87384 1.20224 0.94070 0.96256 1.41179 0.90052 1.24992 0.94580 0.98864 0.94169 1.69884 1.10709 1.30763 1.41973 0.86917 0.79162 0.84278 0.79309 1.20170 1.21825 1.18461 1.22823 1.01580 0.92688 1.03797 1.23010 1.02192 0.96292 1.01194 1.74690 1.12687 1.04163 1.14692 0.91389 0.90835 0.89390 0.86825 0.87097 0.77357 0.90994 0.93269 0.92531 0.90761 0.89123 0.88730 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.90 16 2 C 0.13 1.08 7.24 -4.04 -0.03 1.05 16 3 N -0.14 -1.88 3.94 -10.61 -0.04 -1.92 16 4 N -0.29 -3.95 12.00 30.90 0.37 -3.58 16 5 C 0.04 0.52 12.05 -16.82 -0.20 0.31 16 6 C -0.03 -0.47 7.26 -82.70 -0.60 -1.07 16 7 C 0.55 11.04 7.96 34.58 0.28 11.32 16 8 O -0.51 -10.55 16.67 -19.25 -0.32 -10.87 16 9 O -0.31 -6.98 10.16 -40.55 -0.41 -7.39 16 10 C 0.11 2.39 5.00 37.16 0.19 2.57 16 11 C -0.01 -0.14 1.06 -155.66 -0.16 -0.31 16 12 C -0.48 -13.55 9.35 -34.44 -0.32 -13.87 16 13 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 16 Si 0.88 21.66 24.88 -169.99 -4.23 17.43 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.11 5.74 56.52 0.32 -5.79 16 20 C -0.17 -3.51 9.96 -26.69 -0.27 -3.78 16 21 C -0.19 -3.97 7.62 -26.69 -0.20 -4.17 16 22 N -0.21 -3.56 12.10 33.41 0.40 -3.15 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.21 2.25 8.06 -52.48 -0.42 1.83 16 29 H 0.07 1.71 6.47 -51.93 -0.34 1.37 16 30 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.09 2.05 7.29 -51.93 -0.38 1.67 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -33.56 308.29 -4.43 -37.99 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.57 Total: 0.17 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.04 Total: -6.75 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 1.51 Total: -35.22 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.73 Total: -18.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.23 Total: 17.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.56 -4.43 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.259 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds