Wall clock time and date at job start Mon Mar 30 2020 04:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46789 * 2 1 4 4 N 1.28520 * 124.43480 * 90.02969 * 3 2 1 5 5 C 1.31121 * 109.06913 * 179.97438 * 4 3 2 6 6 C 1.40965 * 105.77688 * 0.23630 * 5 4 3 7 7 C 1.47673 * 127.24555 * 179.75654 * 6 5 4 8 8 O 1.21475 * 120.00167 * 354.97509 * 7 6 5 9 9 O 1.34720 * 119.99991 * 174.97397 * 7 6 5 10 10 C 1.45205 * 116.99909 * 185.19440 * 9 7 6 11 11 C 1.52995 * 109.46813 * 184.20595 * 10 9 7 12 12 C 1.50701 * 115.55147 * 64.76828 * 11 10 9 13 13 H 1.07999 * 119.99816 * 266.67592 * 12 11 10 14 14 C 1.37872 * 119.99811 * 86.68353 * 12 11 10 15 15 N 1.31512 * 119.99868 * 178.71837 * 14 12 11 16 16 Si 1.86806 * 120.00149 * 358.71743 * 14 12 11 17 17 H 1.48495 * 109.47070 * 90.85602 * 16 14 12 18 18 H 1.48502 * 109.46942 * 210.85692 * 16 14 12 19 19 H 1.48494 * 109.46989 * 330.85217 * 16 14 12 20 20 C 1.53005 * 117.49827 * 279.09804 * 11 10 9 21 21 C 1.53004 * 117.49743 * 210.43913 * 11 10 9 22 22 N 1.28583 * 124.43748 * 269.98157 * 3 2 1 23 23 H 1.09003 * 109.47598 * 299.99786 * 1 2 3 24 24 H 1.09000 * 109.47580 * 59.99515 * 1 2 3 25 25 H 1.08996 * 109.47327 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47330 * 240.00609 * 2 1 3 27 27 H 1.08994 * 109.47343 * 120.00148 * 2 1 3 28 28 H 1.08006 * 127.10890 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46840 * 304.20662 * 10 9 7 30 30 H 1.09001 * 109.46631 * 64.20388 * 10 9 7 31 31 H 0.97003 * 120.00360 * 179.97438 * 15 14 12 32 32 H 1.09001 * 117.49816 * 359.97438 * 20 11 10 33 33 H 1.09001 * 117.50133 * 145.02525 * 20 11 10 34 34 H 1.08994 * 117.49907 * 214.97925 * 21 11 10 35 35 H 1.09001 * 117.49744 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2610 2.0663 1.0600 5 6 2.6827 3.2582 0.7126 6 6 2.6805 3.2698 -0.6970 7 6 3.0677 4.3865 -1.5823 8 8 3.3511 5.4680 -1.1073 9 8 3.1068 4.2058 -2.9168 10 6 3.6067 5.3094 -3.7171 11 6 3.4786 4.9619 -5.2015 12 6 2.0700 4.7965 -5.7111 13 1 1.6152 3.8172 -5.7331 14 6 1.3620 5.8954 -6.1494 15 7 0.1420 5.7476 -6.6176 16 14 2.1357 7.5942 -6.0782 17 1 2.8398 7.8714 -7.3559 18 1 1.0757 8.6124 -5.8661 19 1 3.1066 7.6493 -4.9559 20 6 4.5608 4.0708 -5.8145 21 6 4.5104 5.5615 -6.1590 22 7 2.2609 2.0667 -1.0605 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.9683 4.0658 1.3704 29 1 3.0257 6.2063 -3.5023 30 1 4.6543 5.4885 -3.4748 31 1 -0.3563 6.5208 -6.9257 32 1 5.3643 3.7325 -5.1602 33 1 4.2541 3.3652 -6.5866 34 1 4.1706 5.8359 -7.1576 35 1 5.2803 6.2038 -5.7314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815964805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:24 Heat of formation + Delta-G solvation = 32.024749 kcal Electronic energy + Delta-G solvation = -19732.939538 eV Core-core repulsion = 16541.395691 eV Total energy + Delta-G solvation = -3191.543847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.82667 -41.31403 -38.83254 -37.11022 -35.88773 -34.26152 -33.87308 -31.60283 -29.16887 -27.56899 -26.22188 -24.93053 -23.35187 -22.62609 -21.94457 -21.05400 -18.92597 -18.72937 -18.37788 -17.94590 -17.31226 -17.25671 -16.63148 -16.03691 -15.61219 -15.09823 -14.85277 -14.63007 -14.18454 -13.93719 -13.71942 -13.20740 -13.08839 -13.04108 -12.76203 -12.40009 -12.28828 -12.12484 -12.07150 -11.94666 -11.73609 -11.63540 -11.52058 -10.93507 -10.66838 -10.62635 -10.38681 -8.30562 -6.38282 -0.04698 0.74985 1.01528 1.33877 1.37828 1.48128 1.65959 1.81005 2.35192 2.77855 3.02452 3.18611 3.67138 3.81578 3.89718 3.96125 4.01004 4.21198 4.22581 4.30461 4.37924 4.49535 4.57452 4.66245 4.71604 4.83440 4.89726 5.01875 5.14872 5.18581 5.39450 5.46019 5.48574 5.65362 6.29268 6.56405 6.70161 6.97969 7.30518 8.85475 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.005112 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.854171 B = 5476.488327 C = 5765.683917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.127 5.127 4 N -0.289 5.289 5 C 0.047 3.953 6 C -0.059 4.059 7 C 0.553 3.447 8 O -0.520 6.520 9 O -0.335 6.335 10 C 0.110 3.890 11 C -0.043 4.043 12 C -0.482 4.482 13 H 0.029 0.971 14 C 0.019 3.981 15 N -0.949 5.949 16 Si 0.936 3.064 17 H -0.257 1.257 18 H -0.297 1.297 19 H -0.237 1.237 20 C -0.155 4.155 21 C -0.174 4.174 22 N -0.240 5.240 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.237 0.763 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.266 0.734 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -9.383 14.646 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.000 4.000 3 N -0.033 5.033 4 N -0.129 5.129 5 C -0.135 4.135 6 C -0.217 4.217 7 C 0.395 3.605 8 O -0.409 6.409 9 O -0.249 6.249 10 C 0.037 3.963 11 C -0.044 4.044 12 C -0.519 4.519 13 H 0.047 0.953 14 C -0.178 4.178 15 N -0.588 5.588 16 Si 0.759 3.241 17 H -0.181 1.181 18 H -0.224 1.224 19 H -0.160 1.160 20 C -0.192 4.192 21 C -0.210 4.210 22 N -0.091 5.091 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.163 0.837 28 H 0.254 0.746 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.268 -10.235 14.646 18.935 hybrid contribution -0.175 1.790 -0.428 1.849 sum 6.093 -8.445 14.218 17.624 Atomic orbital electron populations 1.22196 0.92187 1.05775 1.02441 1.22738 0.96849 0.71866 1.08517 1.48984 1.41428 1.14552 0.98374 1.73998 1.17892 1.05314 1.15669 1.25266 1.00294 0.96066 0.91919 1.21886 1.12968 0.92689 0.94189 1.19659 0.73664 0.85521 0.81634 1.90797 1.47316 1.25803 1.76953 1.86679 1.75789 1.45177 1.17248 1.23010 0.97612 0.86283 0.89435 1.19231 0.91451 1.05012 0.88673 1.20338 0.96717 0.94052 1.40842 0.95307 1.25873 0.94885 1.03289 0.93790 1.70043 1.12683 1.32050 1.44048 0.85940 0.78724 0.78531 0.80864 1.18115 1.22448 1.15983 1.22873 1.00486 0.92636 1.03202 1.23089 1.01055 0.97035 0.99871 1.74632 1.13434 1.04590 1.16408 0.91862 0.93576 0.86039 0.85543 0.83711 0.74645 0.92879 0.90105 0.92506 0.87635 0.89946 0.89616 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 71.98 0.74 -1.50 16 2 C 0.12 1.65 7.24 86.38 0.63 2.27 16 3 N -0.13 -3.18 3.94 -187.50 -0.74 -3.92 16 4 N -0.29 -7.21 12.00 -56.14 -0.67 -7.89 16 5 C 0.05 1.24 12.05 85.47 1.03 2.27 16 6 C -0.06 -2.00 7.26 42.21 0.31 -1.70 16 7 C 0.55 22.05 7.96 70.31 0.56 22.61 16 8 O -0.52 -21.28 16.67 19.92 0.33 -20.95 16 9 O -0.33 -15.04 10.16 -56.30 -0.57 -15.61 16 10 C 0.11 4.80 5.00 71.98 0.36 5.16 16 11 C -0.04 -1.99 1.06 -52.93 -0.06 -2.05 16 12 C -0.48 -28.13 9.35 25.60 0.24 -27.89 16 13 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 14 C 0.02 1.12 5.47 84.65 0.46 1.58 16 15 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 16 Si 0.94 44.44 24.88 68.60 1.71 46.14 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 19 H -0.24 -10.28 5.74 99.48 0.57 -9.71 16 20 C -0.15 -6.01 9.96 30.62 0.30 -5.71 16 21 C -0.17 -6.73 7.62 30.62 0.23 -6.50 16 22 N -0.24 -7.94 12.10 -48.21 -0.58 -8.52 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.24 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.05 2.47 6.47 -2.39 -0.02 2.46 16 30 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 31 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.09 3.49 7.29 -2.39 -0.02 3.47 16 35 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -75.97 308.29 5.53 -70.43 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.96 Total: 11.75 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.80 Total: -11.43 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -1.70 Total: -80.34 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.24 Total: -36.56 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.71 Total: 46.14 kcal Total: -75.97 5.53 -70.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.458 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds