Wall clock time and date at job start Mon Mar 30 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47079 * 2 1 4 4 N 1.28510 * 124.43949 * 269.98160 * 3 2 1 5 5 C 1.31127 * 109.07407 * 180.02562 * 4 3 2 6 6 C 1.40970 * 105.77015 * 359.97438 * 5 4 3 7 7 C 1.47681 * 127.24308 * 180.26362 * 6 5 4 8 8 O 1.21477 * 119.99565 * 359.71024 * 7 6 5 9 9 O 1.34706 * 120.00257 * 179.71151 * 7 6 5 10 10 C 1.45195 * 117.00106 * 177.71025 * 9 7 6 11 11 C 1.50697 * 112.85166 * 65.17948 * 10 9 7 12 12 H 1.08002 * 119.99798 * 242.52557 * 11 10 9 13 13 C 1.37874 * 120.00121 * 62.52231 * 11 10 9 14 14 N 1.31514 * 119.99997 * 353.77462 * 13 11 10 15 15 Si 1.86797 * 119.99858 * 173.77527 * 13 11 10 16 16 H 1.48502 * 109.47605 * 59.99974 * 15 13 11 17 17 H 1.48503 * 109.47160 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47268 * 300.00115 * 15 13 11 19 19 C 1.53786 * 113.61311 * 293.97758 * 10 9 7 20 20 C 1.53960 * 87.01994 * 220.04767 * 19 10 9 21 21 C 1.53782 * 87.11032 * 25.36684 * 20 19 10 22 22 N 1.28595 * 124.43374 * 89.99796 * 3 2 1 23 23 H 1.09005 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47107 * 299.99700 * 1 2 3 25 25 H 1.08999 * 109.47716 * 59.99335 * 1 2 3 26 26 H 1.09000 * 109.47107 * 240.00300 * 2 1 3 27 27 H 1.08998 * 109.47365 * 119.99778 * 2 1 3 28 28 H 1.08002 * 127.11186 * 180.02562 * 5 4 3 29 29 H 0.97003 * 119.99753 * 185.01766 * 14 13 11 30 30 H 1.08995 * 113.61803 * 334.57163 * 19 10 9 31 31 H 1.09002 * 113.61380 * 105.47488 * 19 10 9 32 32 H 1.08999 * 113.53527 * 270.81616 * 20 19 10 33 33 H 1.08995 * 113.73970 * 139.94638 * 20 19 10 34 34 H 1.09001 * 113.61354 * 220.08987 * 21 20 19 35 35 H 1.09001 * 113.69230 * 89.19731 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2608 2.0663 -1.0599 5 6 2.6827 3.2583 -0.7124 6 6 2.6854 3.2679 0.6973 7 6 3.0744 4.3840 1.5827 8 8 3.4475 5.4366 1.1048 9 8 3.0154 4.2348 2.9202 10 6 3.4612 5.3553 3.7288 11 6 2.5894 6.5744 3.5708 12 1 3.0045 7.4866 3.1684 13 6 1.2619 6.5251 3.9400 14 7 0.7253 5.3842 4.3141 15 14 0.2256 8.0789 3.9088 16 1 0.1939 8.6253 2.5283 17 1 -1.1570 7.7607 4.3475 18 1 0.8160 9.0862 4.8263 19 6 4.9644 5.6515 3.5959 20 6 4.9653 5.9119 5.1133 21 6 3.7415 4.9842 5.1946 22 7 2.2606 2.0668 1.0606 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9682 4.0659 -1.3702 29 1 -0.2247 5.3341 4.5037 30 1 5.5558 4.7846 3.3013 31 1 5.1839 6.5373 2.9998 32 1 4.7471 6.9467 5.3774 33 1 5.8445 5.5208 5.6251 34 1 2.9752 5.3321 5.8873 35 1 3.9967 3.9343 5.3381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816076484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:20 Heat of formation + Delta-G solvation = 49.127177 kcal Electronic energy + Delta-G solvation = -20383.924447 eV Core-core repulsion = 17193.122217 eV Total energy + Delta-G solvation = -3190.802230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.32010 -39.12119 -36.98637 -34.75122 -34.13843 -32.32736 -32.23357 -30.27179 -26.29973 -25.12933 -24.53630 -23.86972 -22.57547 -21.25324 -19.99544 -18.52929 -17.29666 -16.93161 -16.39905 -15.85655 -15.10829 -14.87503 -14.76281 -14.19572 -14.13228 -13.79483 -13.11247 -12.88500 -12.32706 -12.23072 -11.66022 -11.57349 -11.51040 -11.07369 -11.00490 -10.89970 -10.64885 -10.46321 -10.27780 -10.09614 -9.88905 -9.79606 -9.53145 -9.13142 -8.79500 -8.54675 -8.49835 -6.07817 -4.20837 1.76591 2.26150 2.34771 3.29911 3.34067 3.38232 3.79583 4.05497 4.28722 4.37696 4.71013 4.85907 4.96323 5.19265 5.27523 5.37243 5.55468 5.70368 5.79055 5.88532 5.91190 6.01153 6.12484 6.30712 6.48664 6.54941 6.67730 6.80114 6.94353 7.13563 7.31137 7.56033 7.78360 7.90343 8.31295 8.43471 8.82599 9.18614 9.49232 10.95934 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.006433 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.516988 B = 4351.829120 C = 4871.327455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.152 5.152 4 N -0.301 5.301 5 C 0.028 3.972 6 C -0.014 4.014 7 C 0.553 3.447 8 O -0.498 6.498 9 O -0.325 6.325 10 C 0.239 3.761 11 C -0.516 4.516 12 H 0.069 0.931 13 C 0.076 3.924 14 N -0.857 5.857 15 Si 0.893 3.107 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.160 4.160 20 C -0.131 4.131 21 C -0.107 4.107 22 N -0.225 5.225 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.207 0.793 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 -9.714 -5.884 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 N -0.056 5.056 4 N -0.140 5.140 5 C -0.155 4.155 6 C -0.176 4.176 7 C 0.393 3.607 8 O -0.385 6.385 9 O -0.239 6.239 10 C 0.205 3.795 11 C -0.553 4.553 12 H 0.087 0.913 13 C -0.131 4.131 14 N -0.493 5.493 15 Si 0.720 3.280 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.198 4.198 20 C -0.168 4.168 21 C -0.145 4.145 22 N -0.073 5.073 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.223 0.777 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.283 -10.734 -5.811 12.273 hybrid contribution -0.480 1.674 -0.153 1.748 sum 0.802 -9.060 -5.964 10.877 Atomic orbital electron populations 1.22194 0.93130 1.03698 1.04044 1.21990 0.96126 0.74513 1.05697 1.48295 1.44359 1.13444 0.99477 1.73883 1.18413 1.05693 1.16024 1.24800 1.01928 0.95148 0.93671 1.22692 1.08206 0.93075 0.93652 1.18981 0.75135 0.83726 0.82841 1.90763 1.44133 1.26391 1.77193 1.86639 1.75612 1.46858 1.14763 1.21290 0.88418 0.83568 0.86220 1.20913 0.95015 0.96036 1.43378 0.91266 1.25094 0.98015 0.96247 0.93716 1.70044 1.12070 1.24293 1.42883 0.86639 0.79084 0.83489 0.78816 1.19981 1.21186 1.19782 1.23576 0.99270 1.00641 0.96284 1.22562 0.97528 1.00389 0.96360 1.22899 0.96522 0.97320 0.97726 1.74659 1.13429 1.04805 1.14392 0.89709 0.90974 0.91474 0.87453 0.87225 0.77679 0.92687 0.92168 0.91630 0.90175 0.92955 0.90691 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 37.15 0.38 -1.21 16 2 C 0.14 1.38 7.24 -4.04 -0.03 1.35 16 3 N -0.15 -2.42 3.94 -10.62 -0.04 -2.46 16 4 N -0.30 -4.92 12.00 30.91 0.37 -4.54 16 5 C 0.03 0.49 12.04 -16.82 -0.20 0.29 16 6 C -0.01 -0.30 7.26 -82.70 -0.60 -0.90 16 7 C 0.55 13.69 7.53 34.59 0.26 13.95 16 8 O -0.50 -12.90 15.44 -19.25 -0.30 -13.20 16 9 O -0.32 -8.61 9.77 -40.51 -0.40 -9.01 16 10 C 0.24 6.14 0.47 -90.95 -0.04 6.09 16 11 C -0.52 -14.37 7.08 -34.44 -0.24 -14.61 16 12 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.08 2.11 5.30 -17.82 -0.09 2.01 16 14 N -0.86 -24.57 12.79 55.43 0.71 -23.86 16 15 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.16 -3.58 6.57 -25.82 -0.17 -3.75 16 20 C -0.13 -2.65 7.81 -25.82 -0.20 -2.85 16 21 C -0.11 -2.48 7.28 -25.91 -0.19 -2.67 16 22 N -0.22 -4.44 12.10 33.41 0.40 -4.04 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.21 3.01 8.06 -52.49 -0.42 2.59 16 29 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.49 8.09 -51.93 -0.42 1.07 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.85 7.98 -51.93 -0.41 1.44 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -33.01 309.27 -5.35 -38.36 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.61 Total: -0.06 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.13 Total: -2.29 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 1.44 Total: -34.91 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.69 Total: -22.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.01 -5.35 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816076484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.491 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds