Wall clock time and date at job start Mon Mar 30 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47079 * 2 1 4 4 N 1.28510 * 124.43949 * 269.98160 * 3 2 1 5 5 C 1.31127 * 109.07407 * 180.02562 * 4 3 2 6 6 C 1.40970 * 105.77015 * 359.97438 * 5 4 3 7 7 C 1.47681 * 127.24308 * 180.26362 * 6 5 4 8 8 O 1.21477 * 119.99565 * 359.71024 * 7 6 5 9 9 O 1.34706 * 120.00257 * 179.71151 * 7 6 5 10 10 C 1.45195 * 117.00106 * 177.71025 * 9 7 6 11 11 C 1.50697 * 112.85166 * 65.17948 * 10 9 7 12 12 H 1.08002 * 119.99798 * 242.52557 * 11 10 9 13 13 C 1.37874 * 120.00121 * 62.52231 * 11 10 9 14 14 N 1.31514 * 119.99997 * 353.77462 * 13 11 10 15 15 Si 1.86797 * 119.99858 * 173.77527 * 13 11 10 16 16 H 1.48502 * 109.47605 * 59.99974 * 15 13 11 17 17 H 1.48503 * 109.47160 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47268 * 300.00115 * 15 13 11 19 19 C 1.53786 * 113.61311 * 293.97758 * 10 9 7 20 20 C 1.53960 * 87.01994 * 220.04767 * 19 10 9 21 21 C 1.53782 * 87.11032 * 25.36684 * 20 19 10 22 22 N 1.28595 * 124.43374 * 89.99796 * 3 2 1 23 23 H 1.09005 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47107 * 299.99700 * 1 2 3 25 25 H 1.08999 * 109.47716 * 59.99335 * 1 2 3 26 26 H 1.09000 * 109.47107 * 240.00300 * 2 1 3 27 27 H 1.08998 * 109.47365 * 119.99778 * 2 1 3 28 28 H 1.08002 * 127.11186 * 180.02562 * 5 4 3 29 29 H 0.97003 * 119.99753 * 185.01766 * 14 13 11 30 30 H 1.08995 * 113.61803 * 334.57163 * 19 10 9 31 31 H 1.09002 * 113.61380 * 105.47488 * 19 10 9 32 32 H 1.08999 * 113.53527 * 270.81616 * 20 19 10 33 33 H 1.08995 * 113.73970 * 139.94638 * 20 19 10 34 34 H 1.09001 * 113.61354 * 220.08987 * 21 20 19 35 35 H 1.09001 * 113.69230 * 89.19731 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2608 2.0663 -1.0599 5 6 2.6827 3.2583 -0.7124 6 6 2.6854 3.2679 0.6973 7 6 3.0744 4.3840 1.5827 8 8 3.4475 5.4366 1.1048 9 8 3.0154 4.2348 2.9202 10 6 3.4612 5.3553 3.7288 11 6 2.5894 6.5744 3.5708 12 1 3.0045 7.4866 3.1684 13 6 1.2619 6.5251 3.9400 14 7 0.7253 5.3842 4.3141 15 14 0.2256 8.0789 3.9088 16 1 0.1939 8.6253 2.5283 17 1 -1.1570 7.7607 4.3475 18 1 0.8160 9.0862 4.8263 19 6 4.9644 5.6515 3.5959 20 6 4.9653 5.9119 5.1133 21 6 3.7415 4.9842 5.1946 22 7 2.2606 2.0668 1.0606 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9682 4.0659 -1.3702 29 1 -0.2247 5.3341 4.5037 30 1 5.5558 4.7846 3.3013 31 1 5.1839 6.5373 2.9998 32 1 4.7471 6.9467 5.3774 33 1 5.8445 5.5208 5.6251 34 1 2.9752 5.3321 5.8873 35 1 3.9967 3.9343 5.3381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816076484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:15 Heat of formation + Delta-G solvation = 27.769099 kcal Electronic energy + Delta-G solvation = -20384.850603 eV Core-core repulsion = 17193.122217 eV Total energy + Delta-G solvation = -3191.728386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -44.70711 -41.02197 -38.83104 -36.08724 -35.80014 -34.37445 -33.71910 -31.44809 -28.28530 -26.65522 -26.34655 -25.19748 -24.27405 -22.47332 -21.66494 -20.45664 -18.84697 -18.59987 -17.83479 -17.49197 -17.02891 -16.80136 -16.10380 -15.96496 -15.60236 -15.14214 -14.87985 -14.20764 -13.71796 -13.51653 -13.17001 -13.04156 -12.94324 -12.93728 -12.80360 -12.35156 -12.29164 -12.12922 -12.04183 -11.80900 -11.66375 -11.50740 -11.41538 -10.79308 -10.57227 -10.53476 -10.40770 -8.18109 -6.37259 0.21436 0.84251 1.19198 1.37520 1.38754 1.46586 2.10213 2.27551 2.37696 2.95326 3.13820 3.83581 3.91417 3.94222 4.00447 4.02262 4.17914 4.24255 4.37068 4.53360 4.64115 4.70140 4.72910 4.86874 4.92840 4.97307 5.14988 5.17855 5.38439 5.42630 5.56773 5.63348 5.75649 5.93532 6.33406 6.68082 6.99514 7.25305 7.38987 8.84973 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.006433 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.516988 B = 4351.829120 C = 4871.327455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.132 5.132 4 N -0.290 5.290 5 C 0.033 3.967 6 C -0.053 4.053 7 C 0.548 3.452 8 O -0.522 6.522 9 O -0.343 6.343 10 C 0.211 3.789 11 C -0.530 4.530 12 H 0.055 0.945 13 C 0.032 3.968 14 N -0.885 5.885 15 Si 0.950 3.050 16 H -0.280 1.280 17 H -0.279 1.279 18 H -0.260 1.260 19 C -0.154 4.154 20 C -0.109 4.109 21 C -0.107 4.107 22 N -0.243 5.243 23 H 0.124 0.876 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.229 0.771 29 H 0.263 0.737 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -10.848 -6.475 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.038 5.038 4 N -0.130 5.130 5 C -0.149 4.149 6 C -0.212 4.212 7 C 0.389 3.611 8 O -0.411 6.411 9 O -0.257 6.257 10 C 0.177 3.823 11 C -0.567 4.567 12 H 0.073 0.927 13 C -0.172 4.172 14 N -0.522 5.522 15 Si 0.774 3.226 16 H -0.205 1.205 17 H -0.205 1.205 18 H -0.184 1.184 19 C -0.191 4.191 20 C -0.146 4.146 21 C -0.145 4.145 22 N -0.093 5.093 23 H 0.142 0.858 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.245 0.755 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.460 -11.864 -6.399 13.559 hybrid contribution -0.565 1.855 -0.049 1.939 sum 0.895 -10.010 -6.448 11.941 Atomic orbital electron populations 1.22187 0.92223 1.05731 1.02304 1.22703 0.96855 0.71967 1.08382 1.48984 1.41872 1.14519 0.98458 1.73915 1.18045 1.05184 1.15813 1.25139 1.01269 0.96097 0.92405 1.22343 1.11295 0.93084 0.94476 1.19453 0.74469 0.84547 0.82586 1.90718 1.45365 1.27655 1.77336 1.86610 1.76101 1.47056 1.15953 1.21609 0.89951 0.83191 0.87546 1.21068 0.95819 0.96496 1.43341 0.92697 1.25778 0.99064 0.98912 0.93430 1.70149 1.12167 1.25925 1.43912 0.85750 0.77870 0.80365 0.78572 1.20543 1.20461 1.18419 1.23508 0.97161 1.00599 0.97864 1.22481 0.97498 0.99820 0.94785 1.22887 0.97353 0.98509 0.95728 1.74581 1.13813 1.04832 1.16096 0.85799 0.93656 0.92157 0.83895 0.85507 0.75504 0.92793 0.91025 0.92636 0.90264 0.88961 0.92898 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.12 2.05 7.24 86.38 0.63 2.68 16 3 N -0.13 -3.99 3.94 -187.50 -0.74 -4.73 16 4 N -0.29 -8.95 12.00 -56.13 -0.67 -9.62 16 5 C 0.03 1.13 12.04 85.47 1.03 2.16 16 6 C -0.05 -2.25 7.26 42.21 0.31 -1.94 16 7 C 0.55 27.80 7.53 70.32 0.53 28.33 16 8 O -0.52 -27.81 15.44 19.91 0.31 -27.50 16 9 O -0.34 -18.64 9.77 -56.16 -0.55 -19.19 16 10 C 0.21 11.00 0.47 -11.01 -0.01 11.00 16 11 C -0.53 -30.13 7.08 25.60 0.18 -29.95 16 12 H 0.05 3.19 7.81 -2.91 -0.02 3.16 16 13 C 0.03 1.79 5.30 84.65 0.45 2.24 16 14 N -0.89 -51.80 12.79 21.45 0.27 -51.52 16 15 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 19 C -0.15 -6.83 6.57 31.18 0.20 -6.62 16 20 C -0.11 -4.23 7.81 31.18 0.24 -3.99 16 21 C -0.11 -4.97 7.28 31.12 0.23 -4.74 16 22 N -0.24 -9.53 12.10 -48.21 -0.58 -10.12 16 23 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.23 6.45 8.06 -2.91 -0.02 6.43 16 29 H 0.26 14.69 8.32 -92.71 -0.77 13.92 16 30 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.05 2.53 8.09 -2.39 -0.02 2.52 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.05 2.65 7.98 -2.39 -0.02 2.63 16 35 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -73.02 309.27 5.68 -67.34 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.09 Total: 11.52 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.53 Total: -2.78 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.72 Total: -75.99 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -0.24 Total: -46.69 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.02 5.68 -67.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816076484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.109 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds