Wall clock time and date at job start Mon Mar 30 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47138 * 299.99739 * 3 2 1 6 6 H 1.48504 * 109.47013 * 59.99816 * 3 2 1 7 7 C 1.37883 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99833 * 181.96546 * 7 2 1 9 9 C 1.50708 * 119.99735 * 1.96734 * 7 2 1 10 10 C 1.52989 * 115.55117 * 84.42905 * 9 7 2 11 11 N 1.46504 * 109.47088 * 38.79343 * 10 9 7 12 12 C 1.34780 * 119.99908 * 176.49603 * 11 10 9 13 13 O 1.21604 * 120.00374 * 359.97438 * 12 11 10 14 14 C 1.47109 * 119.99676 * 180.02562 * 12 11 10 15 15 C 1.32996 * 119.99855 * 188.97748 * 14 12 11 16 16 C 1.50703 * 119.99804 * 20.40308 * 15 14 12 17 17 H 1.08996 * 110.27837 * 354.89176 * 16 15 14 18 18 C 1.54943 * 110.31143 * 116.98663 * 16 15 14 19 19 C 1.55309 * 100.98122 * 155.33594 * 18 16 15 20 20 C 1.54432 * 102.22785 * 325.91750 * 19 18 16 21 21 O 1.43239 * 107.61055 * 21.29840 * 20 19 18 22 22 C 1.53001 * 117.51472 * 230.13214 * 9 7 2 23 23 C 1.52999 * 60.00044 * 107.48128 * 22 9 7 24 24 H 0.96998 * 120.00242 * 5.01646 * 1 2 3 25 25 H 1.09001 * 109.47565 * 278.79642 * 10 9 7 26 26 H 1.09004 * 109.47167 * 158.78858 * 10 9 7 27 27 H 0.97000 * 120.00408 * 356.48932 * 11 10 9 28 28 H 1.08002 * 120.00309 * 8.97329 * 14 12 11 29 29 H 1.08000 * 120.00254 * 200.40298 * 15 14 12 30 30 H 1.09000 * 111.12192 * 273.27673 * 18 16 15 31 31 H 1.09005 * 111.12160 * 37.39746 * 18 16 15 32 32 H 1.08991 * 110.84809 * 84.08114 * 19 18 16 33 33 H 1.09001 * 110.84199 * 207.69647 * 19 18 16 34 34 H 1.08997 * 109.79565 * 261.79866 * 20 19 18 35 35 H 1.08999 * 109.92678 * 140.87310 * 20 19 18 36 36 H 1.09000 * 117.49412 * 214.97538 * 22 9 7 37 37 H 1.09001 * 117.49943 * 359.97438 * 22 9 7 38 38 H 1.09007 * 117.49475 * 252.50931 * 23 22 9 39 39 H 1.08999 * 117.50288 * 107.49100 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1943 0.0326 9 6 1.2517 -2.4989 -0.0437 10 6 0.8468 -2.9802 -1.4383 11 7 1.9257 -2.6920 -2.3866 12 6 1.8206 -3.0930 -3.6691 13 8 0.8306 -3.6944 -4.0390 14 6 2.9043 -2.8041 -4.6212 15 6 2.7292 -3.0374 -5.9187 16 6 1.3362 -3.1485 -6.4831 17 1 0.5991 -3.1030 -5.6814 18 6 1.0813 -2.0190 -7.5126 19 6 -0.0302 -2.6610 -8.3870 20 6 0.3618 -4.1546 -8.3696 21 8 1.1946 -4.3708 -7.2244 22 6 1.6206 -3.5633 0.9916 23 6 0.2981 -2.8038 1.1133 24 1 -0.4850 0.8368 -0.0735 25 1 -0.0602 -2.4635 -1.7520 26 1 0.6628 -4.0543 -1.4128 27 1 2.7156 -2.2125 -2.0916 28 1 3.8420 -2.4025 -4.2665 29 1 3.5852 -3.1472 -6.5680 30 1 0.7220 -1.1143 -7.0223 31 1 1.9757 -1.8151 -8.1015 32 1 -1.0118 -2.5125 -7.9372 33 1 -0.0032 -2.2639 -9.4018 34 1 0.9107 -4.4028 -9.2780 35 1 -0.5331 -4.7727 -8.2979 36 1 1.5751 -4.6065 0.6789 37 1 2.4084 -3.3201 1.7046 38 1 0.2156 -2.0608 1.9067 39 1 -0.6177 -3.3473 0.8809 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819520924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:02 Heat of formation + Delta-G solvation = -37.456135 kcal Electronic energy + Delta-G solvation = -20060.227517 eV Core-core repulsion = 16969.211096 eV Total energy + Delta-G solvation = -3091.016421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69723 -38.67116 -36.72088 -33.49907 -33.15788 -32.04620 -31.95517 -28.65494 -26.41310 -25.37017 -22.95773 -21.60568 -21.23229 -21.02513 -19.63620 -18.77341 -16.85622 -16.62653 -16.10466 -15.52448 -14.93904 -14.89563 -14.54502 -14.20018 -13.76139 -13.57701 -13.03866 -12.90138 -12.78661 -12.48487 -12.01804 -11.70469 -11.64722 -11.36336 -11.05850 -11.04986 -10.97678 -10.89699 -10.55575 -10.22392 -9.80906 -9.53681 -9.35820 -9.07398 -8.57708 -8.49721 -8.31027 -7.92214 -6.14711 -4.24997 1.49773 3.19670 3.29534 3.30687 3.75335 4.00014 4.13153 4.29696 4.49854 4.75137 4.89124 5.13240 5.18345 5.24817 5.37015 5.39280 5.49290 5.63438 5.67581 5.72849 5.84383 5.98126 6.03407 6.21629 6.30430 6.35529 6.50014 6.54848 6.69263 6.75577 6.93999 7.09487 7.19539 7.25868 7.38759 7.52976 7.73844 8.29238 8.40927 8.78535 8.96438 9.43240 10.93258 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.004817 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.159265 B = 5811.880934 C = 6414.451487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.024 3.976 10 C 0.162 3.838 11 N -0.686 5.686 12 C 0.527 3.473 13 O -0.554 6.554 14 C -0.191 4.191 15 C -0.077 4.077 16 C 0.074 3.926 17 H 0.131 0.869 18 C -0.149 4.149 19 C -0.154 4.154 20 C 0.051 3.949 21 O -0.374 6.374 22 C -0.211 4.211 23 C -0.147 4.147 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.407 0.593 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -2.911 -12.531 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.023 3.977 10 C 0.039 3.961 11 N -0.335 5.335 12 C 0.315 3.685 13 O -0.437 6.437 14 C -0.212 4.212 15 C -0.097 4.097 16 C 0.018 3.982 17 H 0.147 0.853 18 C -0.187 4.187 19 C -0.191 4.191 20 C -0.026 4.026 21 O -0.294 6.294 22 C -0.248 4.248 23 C -0.185 4.185 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.244 0.756 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.667 -3.385 -12.601 13.317 hybrid contribution 0.749 1.474 0.063 1.655 sum 3.416 -1.911 -12.538 13.135 Atomic orbital electron populations 1.70004 1.05915 1.26876 1.47788 1.24991 0.94779 0.98927 0.94120 0.86616 0.80240 0.83921 0.77739 1.19580 1.20932 1.20954 1.20368 0.92367 0.88521 1.52815 0.92025 1.19052 0.99075 0.93522 0.86060 1.20874 0.89174 0.96972 0.89111 1.46039 1.23207 1.55481 1.08736 1.18644 0.86667 0.80110 0.83081 1.90596 1.32389 1.43190 1.77531 1.22865 1.00364 1.03814 0.94144 1.23480 0.97476 0.93560 0.95204 1.23110 0.96739 0.82953 0.95443 0.85251 1.23297 0.98867 0.99161 0.97340 1.23110 0.99743 0.95521 1.00770 1.23057 0.94566 0.95634 0.89336 1.88460 1.70066 1.32399 1.38449 1.23087 0.99986 0.95641 1.06130 1.22474 0.91226 1.01402 1.03374 0.92882 0.91798 0.94057 0.75619 0.84993 0.85823 0.89812 0.90731 0.90381 0.90281 0.91903 0.91703 0.91627 0.90428 0.89690 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.55 12.74 55.43 0.71 -22.84 16 2 C 0.08 1.96 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.50 7.35 -34.43 -0.25 -12.75 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.02 0.55 1.79 -155.66 -0.28 0.27 16 10 C 0.16 3.65 5.76 -4.05 -0.02 3.63 16 11 N -0.69 -13.80 5.37 -61.49 -0.33 -14.13 16 12 C 0.53 10.20 7.53 -12.66 -0.10 10.10 16 13 O -0.55 -12.30 13.45 5.27 0.07 -12.23 16 14 C -0.19 -2.88 9.99 -37.80 -0.38 -3.25 16 15 C -0.08 -1.09 9.20 -36.12 -0.33 -1.42 16 16 C 0.07 1.13 3.24 -26.86 -0.09 1.05 16 17 H 0.13 2.43 4.71 -52.46 -0.25 2.19 16 18 C -0.15 -1.77 6.56 -24.48 -0.16 -1.93 16 19 C -0.15 -1.62 7.02 -24.76 -0.17 -1.79 16 20 C 0.05 0.61 7.79 37.91 0.30 0.91 16 21 O -0.37 -6.02 11.03 -35.23 -0.39 -6.41 16 22 C -0.21 -4.45 9.88 -26.73 -0.26 -4.71 16 23 C -0.15 -3.35 9.27 -26.73 -0.25 -3.60 16 24 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 25 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 27 H 0.41 7.75 7.31 -40.82 -0.30 7.45 16 28 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -29.17 325.87 -8.14 -37.31 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.99 Total: 10.26 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.10 Total: -11.64 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.38 Total: -36.98 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.32 Total: -18.64 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.17 -8.14 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819520924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.147 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds