Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47138 * 299.99739 * 3 2 1 6 6 H 1.48504 * 109.47013 * 59.99816 * 3 2 1 7 7 C 1.37883 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99833 * 181.96546 * 7 2 1 9 9 C 1.50708 * 119.99735 * 1.96734 * 7 2 1 10 10 C 1.52989 * 115.55117 * 84.42905 * 9 7 2 11 11 N 1.46504 * 109.47088 * 38.79343 * 10 9 7 12 12 C 1.34780 * 119.99908 * 176.49603 * 11 10 9 13 13 O 1.21604 * 120.00374 * 359.97438 * 12 11 10 14 14 C 1.47109 * 119.99676 * 180.02562 * 12 11 10 15 15 C 1.32996 * 119.99855 * 188.97748 * 14 12 11 16 16 C 1.50703 * 119.99804 * 20.40308 * 15 14 12 17 17 H 1.08996 * 110.27837 * 354.89176 * 16 15 14 18 18 C 1.54943 * 110.31143 * 116.98663 * 16 15 14 19 19 C 1.55309 * 100.98122 * 155.33594 * 18 16 15 20 20 C 1.54432 * 102.22785 * 325.91750 * 19 18 16 21 21 O 1.43239 * 107.61055 * 21.29840 * 20 19 18 22 22 C 1.53001 * 117.51472 * 230.13214 * 9 7 2 23 23 C 1.52999 * 60.00044 * 107.48128 * 22 9 7 24 24 H 0.96998 * 120.00242 * 5.01646 * 1 2 3 25 25 H 1.09001 * 109.47565 * 278.79642 * 10 9 7 26 26 H 1.09004 * 109.47167 * 158.78858 * 10 9 7 27 27 H 0.97000 * 120.00408 * 356.48932 * 11 10 9 28 28 H 1.08002 * 120.00309 * 8.97329 * 14 12 11 29 29 H 1.08000 * 120.00254 * 200.40298 * 15 14 12 30 30 H 1.09000 * 111.12192 * 273.27673 * 18 16 15 31 31 H 1.09005 * 111.12160 * 37.39746 * 18 16 15 32 32 H 1.08991 * 110.84809 * 84.08114 * 19 18 16 33 33 H 1.09001 * 110.84199 * 207.69647 * 19 18 16 34 34 H 1.08997 * 109.79565 * 261.79866 * 20 19 18 35 35 H 1.08999 * 109.92678 * 140.87310 * 20 19 18 36 36 H 1.09000 * 117.49412 * 214.97538 * 22 9 7 37 37 H 1.09001 * 117.49943 * 359.97438 * 22 9 7 38 38 H 1.09007 * 117.49475 * 252.50931 * 23 22 9 39 39 H 1.08999 * 117.50288 * 107.49100 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1943 0.0326 9 6 1.2517 -2.4989 -0.0437 10 6 0.8468 -2.9802 -1.4383 11 7 1.9257 -2.6920 -2.3866 12 6 1.8206 -3.0930 -3.6691 13 8 0.8306 -3.6944 -4.0390 14 6 2.9043 -2.8041 -4.6212 15 6 2.7292 -3.0374 -5.9187 16 6 1.3362 -3.1485 -6.4831 17 1 0.5991 -3.1030 -5.6814 18 6 1.0813 -2.0190 -7.5126 19 6 -0.0302 -2.6610 -8.3870 20 6 0.3618 -4.1546 -8.3696 21 8 1.1946 -4.3708 -7.2244 22 6 1.6206 -3.5633 0.9916 23 6 0.2981 -2.8038 1.1133 24 1 -0.4850 0.8368 -0.0735 25 1 -0.0602 -2.4635 -1.7520 26 1 0.6628 -4.0543 -1.4128 27 1 2.7156 -2.2125 -2.0916 28 1 3.8420 -2.4025 -4.2665 29 1 3.5852 -3.1472 -6.5680 30 1 0.7220 -1.1143 -7.0223 31 1 1.9757 -1.8151 -8.1015 32 1 -1.0118 -2.5125 -7.9372 33 1 -0.0032 -2.2639 -9.4018 34 1 0.9107 -4.4028 -9.2780 35 1 -0.5331 -4.7727 -8.2979 36 1 1.5751 -4.6065 0.6789 37 1 2.4084 -3.3201 1.7046 38 1 0.2156 -2.0608 1.9067 39 1 -0.6177 -3.3473 0.8809 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819520924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = -55.642561 kcal Electronic energy + Delta-G solvation = -20061.016140 eV Core-core repulsion = 16969.211096 eV Total energy + Delta-G solvation = -3091.805044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.02247 -39.97559 -38.48519 -34.98168 -34.54278 -33.99388 -32.94045 -29.80546 -28.07931 -27.23308 -24.16103 -22.93467 -22.53203 -22.38844 -21.40336 -20.29425 -18.16814 -18.07936 -17.57233 -16.83290 -16.68331 -16.22274 -16.11350 -15.67162 -15.30315 -14.79208 -14.51357 -14.17270 -14.01261 -13.88733 -13.74085 -13.48848 -12.90441 -12.85319 -12.67305 -12.32334 -12.29112 -12.06860 -12.01709 -11.86189 -11.39239 -11.00786 -10.90534 -10.67179 -10.44291 -10.09890 -9.78636 -9.65328 -8.10122 -6.24950 0.29179 1.43044 1.47588 1.56507 2.32763 2.42349 2.54115 3.06013 3.20158 3.47287 3.57893 3.75303 4.01321 4.06289 4.24823 4.26399 4.41557 4.46396 4.51428 4.58235 4.68553 4.73669 4.79673 4.87236 4.94372 4.99573 5.02159 5.05020 5.19996 5.22077 5.25745 5.44908 5.61380 5.64948 5.75685 5.78421 6.13784 6.37420 6.81988 6.88701 7.43954 7.46241 8.98049 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.004817 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.159265 B = 5811.880934 C = 6414.451487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.949 3.051 4 H -0.257 1.257 5 H -0.285 1.285 6 H -0.290 1.290 7 C -0.503 4.503 8 H 0.068 0.932 9 C 0.002 3.998 10 C 0.177 3.823 11 N -0.688 5.688 12 C 0.521 3.479 13 O -0.590 6.590 14 C -0.204 4.204 15 C -0.060 4.060 16 C 0.061 3.939 17 H 0.088 0.912 18 C -0.143 4.143 19 C -0.149 4.149 20 C 0.041 3.959 21 O -0.401 6.401 22 C -0.183 4.183 23 C -0.157 4.157 24 H 0.258 0.742 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.413 0.587 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -2.587 -14.198 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.211 1.211 6 H -0.216 1.216 7 C -0.541 4.541 8 H 0.086 0.914 9 C 0.002 3.998 10 C 0.052 3.948 11 N -0.336 5.336 12 C 0.311 3.689 13 O -0.475 6.475 14 C -0.225 4.225 15 C -0.080 4.080 16 C 0.004 3.996 17 H 0.105 0.895 18 C -0.180 4.180 19 C -0.186 4.186 20 C -0.036 4.036 21 O -0.322 6.322 22 C -0.220 4.220 23 C -0.195 4.195 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.251 0.749 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.977 -3.065 -14.272 15.423 hybrid contribution -0.035 1.289 0.523 1.391 sum 4.942 -1.776 -13.749 14.718 Atomic orbital electron populations 1.70136 1.07425 1.27324 1.49470 1.25696 0.95353 1.02032 0.94073 0.85648 0.79772 0.80024 0.77077 1.18016 1.21127 1.21599 1.20635 0.92699 0.89119 1.51634 0.91411 1.19154 0.99823 0.94294 0.86554 1.20520 0.88694 0.96250 0.89362 1.45959 1.22712 1.56052 1.08918 1.19420 0.87186 0.79111 0.83173 1.90608 1.34204 1.44663 1.78033 1.22889 1.00091 1.05917 0.93555 1.23846 0.97916 0.90885 0.95306 1.23014 0.96626 0.84413 0.95510 0.89467 1.23285 1.00370 0.97684 0.96703 1.23128 0.98822 0.94457 1.02202 1.23315 0.94580 0.96704 0.88964 1.88419 1.70823 1.33144 1.39790 1.23083 0.98510 0.96040 1.04369 1.22383 0.92448 1.01791 1.02879 0.93269 0.95552 0.94105 0.74926 0.81518 0.81918 0.90107 0.88247 0.91245 0.87134 0.89431 0.91870 0.89579 0.89669 0.91748 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.20 12.74 21.45 0.27 -49.92 16 2 C 0.03 1.52 5.43 84.66 0.46 1.98 16 3 Si 0.95 40.48 29.54 68.60 2.03 42.51 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.50 -24.81 7.35 25.60 0.19 -24.62 16 8 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.00 0.11 1.79 -52.93 -0.09 0.02 16 10 C 0.18 8.15 5.76 86.37 0.50 8.65 16 11 N -0.69 -27.80 5.37 -466.71 -2.51 -30.31 16 12 C 0.52 20.29 7.53 86.57 0.65 20.94 16 13 O -0.59 -27.19 13.45 -4.04 -0.05 -27.24 16 14 C -0.20 -5.78 9.99 23.43 0.23 -5.55 16 15 C -0.06 -1.55 9.20 24.52 0.23 -1.32 16 16 C 0.06 1.83 3.24 30.51 0.10 1.93 16 17 H 0.09 3.41 4.71 -10.80 -0.05 3.36 16 18 C -0.14 -3.11 6.56 32.05 0.21 -2.90 16 19 C -0.15 -2.84 7.02 31.87 0.22 -2.61 16 20 C 0.04 0.91 7.79 72.47 0.56 1.47 16 21 O -0.40 -12.57 11.03 -148.98 -1.64 -14.22 16 22 C -0.18 -7.49 9.88 30.59 0.30 -7.18 16 23 C -0.16 -7.26 9.27 30.59 0.28 -6.97 16 24 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.85 7.94 -2.39 -0.02 1.83 16 27 H 0.41 15.45 7.31 -92.71 -0.68 14.77 16 28 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.68 8.05 -2.38 -0.02 1.66 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 3.17 8.08 -2.39 -0.02 3.15 16 37 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 39 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -64.72 325.87 2.26 -62.46 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.32 Total: 32.90 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 3.85 Total: -16.17 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.23 Total: -80.23 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.70 Total: -41.46 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -64.72 2.26 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819520924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.817 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds