Wall clock time and date at job start Mon Mar 30 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00185 * 2 1 4 4 H 1.48496 * 109.47091 * 270.00073 * 3 2 1 5 5 H 1.48499 * 109.46955 * 29.99860 * 3 2 1 6 6 H 1.48495 * 109.47451 * 150.00066 * 3 2 1 7 7 C 1.37876 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00298 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46754 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00263 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99598 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99458 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46758 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.26100 * 53.51670 * 15 14 13 17 17 C 1.50137 * 109.25851 * 294.03154 * 15 14 13 18 18 C 1.29924 * 124.13769 * 232.65862 * 17 15 14 19 19 C 1.51731 * 120.91324 * 0.88054 * 18 17 15 20 20 H 1.09004 * 113.14420 * 201.34455 * 19 18 17 21 21 C 1.55672 * 106.15643 * 326.09964 * 19 18 17 22 22 C 1.53427 * 109.23227 * 172.98640 * 15 14 13 23 23 H 1.09006 * 112.51408 * 290.56998 * 22 15 14 24 24 C 1.54272 * 108.97124 * 57.05303 * 22 15 14 25 25 O 1.42953 * 107.71085 * 91.89286 * 24 22 15 26 26 H 0.97004 * 120.00445 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47147 * 59.99590 * 9 7 2 28 28 H 1.09000 * 109.46996 * 299.99354 * 9 7 2 29 29 H 1.09000 * 109.47178 * 60.00340 * 10 9 7 30 30 H 1.09000 * 109.47626 * 299.99497 * 10 9 7 31 31 H 0.96993 * 120.00338 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47256 * 60.00057 * 14 13 11 33 33 H 1.09000 * 109.47183 * 299.99639 * 14 13 11 34 34 H 1.08003 * 117.93045 * 52.68000 * 17 15 14 35 35 H 1.07999 * 119.54883 * 180.60444 * 18 17 15 36 36 H 1.08999 * 111.61539 * 311.43827 * 21 19 18 37 37 H 1.09002 * 111.48147 * 186.34925 * 21 19 18 38 38 H 1.09000 * 109.84567 * 211.64505 * 24 22 15 39 39 H 1.08995 * 109.84783 * 332.68413 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0214 -2.6365 -0.0001 11 6 5.5285 -2.6365 -0.0001 12 8 6.1349 -1.5862 0.0004 13 7 6.2023 -3.8038 0.0003 14 6 7.6674 -3.8037 0.0008 15 6 8.1773 -5.2462 0.0006 16 1 7.7207 -5.7888 -0.8271 17 6 7.7978 -5.9058 1.2947 18 6 8.6374 -6.5173 2.0752 19 6 10.1125 -6.5914 1.7277 20 1 10.6305 -7.4084 2.2301 21 6 10.1880 -6.6796 0.1753 22 6 9.7015 -5.2433 -0.1758 23 1 10.0056 -4.9272 -1.1737 24 6 10.3350 -4.4002 0.9501 25 8 10.6469 -5.2821 2.0310 26 1 -0.4851 0.8400 0.0004 27 1 3.8745 -0.6807 0.8904 28 1 3.8752 -0.6797 -0.8895 29 1 3.6585 -3.1501 -0.8903 30 1 3.6579 -3.1506 0.8897 31 1 5.7174 -4.6438 0.0002 32 1 8.0304 -3.2897 0.8908 33 1 8.0310 -3.2900 -0.8892 34 1 6.7612 -5.8701 1.5958 35 1 8.2813 -6.9754 2.9861 36 1 9.5098 -7.4373 -0.2173 37 1 11.2094 -6.8489 -0.1657 38 1 11.2441 -3.9210 0.5867 39 1 9.6269 -3.6444 1.2896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831155118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:38 Heat of formation + Delta-G solvation = -94.487716 kcal Electronic energy + Delta-G solvation = -19856.464159 eV Core-core repulsion = 16762.974663 eV Total energy + Delta-G solvation = -3093.489496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99840 -40.57839 -37.03816 -35.55188 -34.89632 -33.38998 -32.81911 -31.13138 -28.67825 -27.37166 -25.45468 -23.60411 -22.67690 -21.74794 -21.05010 -19.50369 -19.22444 -18.20233 -17.49578 -17.25759 -16.71811 -16.30775 -16.11337 -15.47031 -15.23564 -14.98040 -14.83891 -14.61932 -14.24284 -14.14866 -13.79163 -13.41546 -13.26819 -13.09337 -12.87756 -12.47769 -12.14357 -12.11506 -11.97475 -11.77895 -11.63870 -11.40720 -11.34203 -10.78822 -10.75687 -10.49807 -10.12086 -10.04383 -8.32260 -6.35135 1.17703 1.32610 1.34706 1.49842 1.68412 2.23837 2.34472 3.02360 3.03497 3.34607 3.55203 3.75853 3.90823 3.96817 4.04448 4.10576 4.22178 4.30786 4.40288 4.47230 4.51051 4.56619 4.72778 4.81320 4.85008 4.91674 5.00526 5.06400 5.11880 5.15029 5.32245 5.44207 5.47259 5.59586 5.60760 5.85204 5.97693 6.22779 6.57737 6.71397 7.30213 7.30812 8.83419 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.044905 B = 0.003405 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.382006 B = 8222.289366 C = 8472.903068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.717 5.717 14 C 0.124 3.876 15 C -0.056 4.056 16 H 0.113 0.887 17 C -0.145 4.145 18 C -0.183 4.183 19 C 0.095 3.905 20 H 0.137 0.863 21 C -0.138 4.138 22 C -0.114 4.114 23 H 0.124 0.876 24 C 0.039 3.961 25 O -0.398 6.398 26 H 0.267 0.733 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.777 -18.226 -0.494 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.034 4.034 10 C -0.157 4.157 11 C 0.301 3.699 12 O -0.468 6.468 13 N -0.371 5.371 14 C 0.000 4.000 15 C -0.074 4.074 16 H 0.131 0.869 17 C -0.163 4.163 18 C -0.202 4.202 19 C 0.039 3.961 20 H 0.154 0.846 21 C -0.175 4.175 22 C -0.132 4.132 23 H 0.142 0.858 24 C -0.037 4.037 25 O -0.318 6.318 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.165 -17.317 -0.301 28.924 hybrid contribution -0.651 0.719 0.112 0.977 sum 22.514 -16.597 -0.189 27.971 Atomic orbital electron populations 1.70018 1.07768 1.28113 1.52519 1.25802 0.95495 1.02853 0.94277 0.85830 0.79174 0.79532 0.79187 1.19247 1.20336 1.18742 1.21439 0.91249 0.93736 1.50302 0.93090 1.19224 0.93932 0.93899 0.96316 1.21499 0.89257 0.99836 1.05079 1.21205 0.91029 0.83398 0.74235 1.90641 1.71429 1.33397 1.51323 1.45900 1.07258 1.08505 1.75397 1.21481 0.79682 0.97243 1.01585 1.20444 0.95920 0.93573 0.97483 0.86932 1.22354 1.00189 0.97804 0.95990 1.23339 0.95952 1.00989 0.99889 1.22976 0.90756 0.86151 0.96241 0.84587 1.23538 1.03512 0.96280 0.94192 1.22923 0.93520 0.96319 1.00471 0.85813 1.23302 1.00192 0.93081 0.87126 1.88645 1.78721 1.21166 1.43268 0.92357 0.97384 0.97254 0.87724 0.88054 0.74718 0.93007 0.91426 0.87106 0.86367 0.88046 0.88807 0.89992 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.94 47.10 27.47 68.60 1.88 48.99 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.26 -13.20 6.54 99.48 0.65 -12.55 16 7 C -0.53 -30.66 9.66 25.60 0.25 -30.41 16 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 9 C 0.00 0.21 3.33 29.85 0.10 0.31 16 10 C -0.12 -4.38 5.64 29.85 0.17 -4.21 16 11 C 0.51 17.99 7.83 87.66 0.69 18.68 16 12 O -0.59 -26.07 15.98 -3.03 -0.05 -26.12 16 13 N -0.72 -17.11 5.31 -463.05 -2.46 -19.57 16 14 C 0.12 2.62 4.53 86.38 0.39 3.01 16 15 C -0.06 -0.78 2.15 -11.57 -0.02 -0.80 16 16 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 17 C -0.15 -2.23 8.41 26.58 0.22 -2.01 16 18 C -0.18 -2.81 9.31 27.09 0.25 -2.56 16 19 C 0.09 1.34 5.00 31.10 0.16 1.49 16 20 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 21 C -0.14 -1.36 6.30 32.43 0.20 -1.16 16 22 C -0.11 -1.40 3.75 -9.30 -0.03 -1.43 16 23 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 24 C 0.04 0.70 6.77 72.41 0.49 1.19 16 25 O -0.40 -8.27 11.01 -148.98 -1.64 -9.91 16 26 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 27 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 28 H 0.01 0.47 7.53 -2.39 -0.02 0.45 16 29 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.42 7.11 7.97 -92.71 -0.74 6.37 16 32 H 0.05 1.33 6.16 -2.39 -0.01 1.32 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 1.68 7.61 -2.91 -0.02 1.66 16 35 H 0.12 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.10 0.77 7.92 -2.39 -0.02 0.75 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.18 5.47 -2.39 -0.01 1.17 16 Total: -1.00 -75.64 311.92 1.61 -74.03 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.25 Total: 8.23 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 3.32 Total: -16.64 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.16 Total: -78.57 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.69 Total: -36.03 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.99 kcal Total: -75.64 1.61 -74.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831155118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.457 kcal (2) G-P(sol) polarization free energy of solvation -75.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds