Wall clock time and date at job start Mon Mar 30 2020 04:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36019 * 117.00115 * 2 1 4 4 C 1.39259 * 120.39090 * 179.97438 * 3 2 1 5 5 C 1.38299 * 118.46339 * 179.77100 * 4 3 2 6 6 C 1.39098 * 119.14895 * 0.49966 * 5 4 3 7 7 N 1.39255 * 119.64648 * 179.77300 * 6 5 4 8 8 N 1.40100 * 120.00143 * 179.72427 * 7 6 5 9 9 C 1.34772 * 120.00068 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99945 * 359.97438 * 9 8 7 11 11 C 1.50695 * 119.99903 * 180.02562 * 9 8 7 12 12 H 1.08994 * 109.47361 * 60.00077 * 11 9 8 13 13 C 1.53006 * 109.47149 * 299.99703 * 11 9 8 14 14 C 1.50703 * 109.47444 * 179.97438 * 11 9 8 15 15 H 1.08001 * 119.99661 * 35.10155 * 14 11 9 16 16 C 1.37868 * 120.00446 * 215.10473 * 14 11 9 17 17 N 1.31514 * 120.00218 * 184.90897 * 16 14 11 18 18 Si 1.86802 * 120.00093 * 4.90794 * 16 14 11 19 19 H 1.48496 * 109.47292 * 84.82010 * 18 16 14 20 20 H 1.48494 * 109.47356 * 204.82457 * 18 16 14 21 21 H 1.48500 * 109.46883 * 324.82243 * 18 16 14 22 22 N 1.32323 * 120.70529 * 359.48864 * 6 5 4 23 23 C 1.32005 * 121.67994 * 0.25960 * 22 6 5 24 24 H 1.08997 * 109.47237 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47434 * 300.00057 * 1 2 3 26 26 H 1.09001 * 109.47198 * 60.00091 * 1 2 3 27 27 H 1.08001 * 120.77312 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.43099 * 180.26838 * 5 4 3 29 29 H 0.97005 * 119.99808 * 359.72203 * 7 6 5 30 30 H 0.96994 * 119.99574 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.46618 * 55.07290 * 13 11 9 32 32 H 1.08997 * 109.46976 * 295.07295 * 13 11 9 33 33 H 1.08994 * 109.47083 * 175.07416 * 13 11 9 34 34 H 0.97002 * 120.00048 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.60898 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4366 1.2943 0.0005 5 6 4.0227 2.5469 -0.0043 6 6 3.2095 3.6754 0.0010 7 7 3.7887 4.9418 0.0010 8 7 2.9767 6.0835 0.0005 9 6 3.5373 7.3091 0.0010 10 8 4.7447 7.4237 0.0023 11 6 2.6639 8.5371 0.0010 12 1 2.0343 8.5352 0.8908 13 6 1.7809 8.5351 -1.2485 14 6 3.5305 9.7701 0.0023 15 1 4.4674 9.7720 -0.5350 16 6 3.1274 10.8954 0.6892 17 7 3.8344 12.0016 0.6116 18 14 1.5769 10.8490 1.7300 19 1 1.9003 10.3122 3.0763 20 1 1.0289 12.2227 1.8634 21 1 0.5689 9.9751 1.0778 22 7 1.8915 3.5585 0.0005 23 6 1.3002 2.3783 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0431 0.4006 0.0005 28 1 5.0980 2.6477 -0.0084 29 1 4.7544 5.0335 0.0013 30 1 2.0111 5.9918 -0.0002 31 1 1.2182 7.6027 -1.2941 32 1 2.4071 8.6253 -2.1361 33 1 1.0884 9.3757 -1.2055 34 1 3.5510 12.7933 1.0953 35 1 0.2217 2.3218 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832647000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:08 Heat of formation + Delta-G solvation = 2.811183 kcal Electronic energy + Delta-G solvation = -19290.072423 eV Core-core repulsion = 16097.261780 eV Total energy + Delta-G solvation = -3192.810643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = -0.13 seconds Orbital eigenvalues (eV) -40.73002 -39.15912 -38.20158 -35.33218 -33.75102 -32.56352 -31.88379 -30.84396 -28.26121 -27.39347 -25.30378 -23.81662 -22.83807 -22.18941 -19.86757 -18.42184 -17.93653 -17.42661 -17.01451 -16.03090 -16.00793 -15.52227 -14.67831 -14.55330 -14.37508 -14.14282 -13.90418 -13.48954 -13.23644 -12.85721 -12.57274 -12.36131 -12.13313 -12.01341 -11.51963 -11.18038 -10.95811 -10.78557 -10.33904 -9.87890 -9.86674 -9.60750 -9.23943 -8.91689 -8.84825 -8.60873 -7.06021 -6.11784 -4.12042 1.04145 1.32884 2.33502 3.08274 3.22995 3.29417 3.32064 3.47393 3.77621 4.00834 4.34454 4.55483 4.67086 4.78250 4.88787 4.90907 5.14724 5.19897 5.31147 5.43019 5.66709 5.77969 5.89069 6.11150 6.27029 6.33722 6.45885 6.74174 6.98147 7.10676 7.15440 7.47543 7.53341 7.98346 8.21432 8.47356 9.03262 9.08121 9.46740 11.01034 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035247 B = 0.003899 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.194346 B = 7180.489180 C = 7667.261789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.003 3.997 4 C -0.053 4.053 5 C -0.198 4.198 6 C 0.383 3.617 7 N -0.520 5.520 8 N -0.535 5.535 9 C 0.518 3.482 10 O -0.534 6.534 11 C 0.010 3.990 12 H 0.058 0.942 13 C -0.136 4.136 14 C -0.497 4.497 15 H 0.088 0.912 16 C 0.074 3.926 17 N -0.891 5.891 18 Si 0.871 3.129 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.263 1.263 22 N -0.519 5.519 23 C 0.078 3.922 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.438 0.562 30 H 0.424 0.576 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -22.715 -0.975 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C -0.047 4.047 4 C -0.079 4.079 5 C -0.225 4.225 6 C 0.145 3.855 7 N -0.248 5.248 8 N -0.285 5.285 9 C 0.306 3.694 10 O -0.406 6.406 11 C -0.014 4.014 12 H 0.076 0.924 13 C -0.195 4.195 14 C -0.535 4.535 15 H 0.106 0.894 16 C -0.129 4.129 17 N -0.529 5.529 18 Si 0.698 3.302 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.187 1.187 22 N -0.238 5.238 23 C -0.080 4.080 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.282 0.718 30 H 0.266 0.734 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.266 -21.662 -0.913 22.867 hybrid contribution -0.645 -0.567 0.659 1.082 sum -7.911 -22.229 -0.254 23.596 Atomic orbital electron populations 1.23021 0.78681 1.03864 1.01310 1.86044 1.20983 1.26022 1.89997 1.19642 0.93022 0.85558 1.06450 1.20563 0.91574 0.97727 0.98079 1.21038 1.00841 0.90398 1.10186 1.18221 0.89012 0.84388 0.93870 1.43300 1.06102 0.94924 1.80468 1.45697 1.07204 0.97004 1.78582 1.22360 0.90636 0.82087 0.74325 1.90591 1.15332 1.85825 1.48891 1.19315 0.94759 0.90788 0.96528 0.92370 1.22005 0.98923 0.99425 0.99120 1.20711 1.07032 0.93025 1.32699 0.89445 1.25017 0.96625 0.95289 0.95962 1.69875 1.39163 1.01665 1.42156 0.86964 0.84124 0.77646 0.81515 1.20007 1.21107 1.18748 1.66928 1.09648 1.27461 1.19782 1.22480 0.99912 0.86194 0.99447 0.88352 0.92730 0.92727 0.83995 0.84055 0.71750 0.73446 0.95254 0.92698 0.92325 0.92391 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.12 10.51 -19.80 -0.21 -3.32 16 3 C 0.00 0.03 6.71 -39.12 -0.26 -0.23 16 4 C -0.05 -0.54 10.12 -39.18 -0.40 -0.94 16 5 C -0.20 -2.20 9.93 -39.24 -0.39 -2.59 16 6 C 0.38 5.34 7.60 -154.85 -1.18 4.16 16 7 N -0.52 -8.21 6.43 31.16 0.20 -8.01 16 8 N -0.54 -9.60 6.15 31.22 0.19 -9.41 16 9 C 0.52 11.44 7.26 -10.99 -0.08 11.36 16 10 O -0.53 -13.60 15.61 5.56 0.09 -13.51 16 11 C 0.01 0.22 2.30 -92.92 -0.21 0.01 16 12 H 0.06 1.30 5.29 -51.93 -0.27 1.02 16 13 C -0.14 -2.70 9.12 37.16 0.34 -2.36 16 14 C -0.50 -14.06 8.36 -34.44 -0.29 -14.34 16 15 H 0.09 2.81 7.61 -52.49 -0.40 2.41 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 18 Si 0.87 20.62 26.99 -169.99 -4.59 16.03 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.26 -5.72 6.82 56.52 0.39 -5.33 16 22 N -0.52 -7.27 9.37 -12.28 -0.12 -7.38 16 23 C 0.08 0.89 10.21 -17.39 -0.18 0.71 16 24 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16 26 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.44 6.67 8.00 -182.59 -1.46 5.21 16 30 H 0.42 6.97 7.31 -182.60 -1.33 5.63 16 31 H 0.03 0.47 7.43 -51.93 -0.39 0.09 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.16 1.36 6.30 -52.49 -0.33 1.03 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -33.84 303.08 -7.09 -40.93 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.25 Total: 7.54 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.75 Total: -1.09 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 1.05 Total: -51.15 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.12 Total: -16.84 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.59 Total: 16.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.84 -7.09 -40.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832647000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.744 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.13 seconds