Wall clock time and date at job start Mon Mar 30 2020 04:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36019 * 117.00115 * 2 1 4 4 C 1.39259 * 120.39090 * 179.97438 * 3 2 1 5 5 C 1.38299 * 118.46339 * 179.77100 * 4 3 2 6 6 C 1.39098 * 119.14895 * 0.49966 * 5 4 3 7 7 N 1.39255 * 119.64648 * 179.77300 * 6 5 4 8 8 N 1.40100 * 120.00143 * 179.72427 * 7 6 5 9 9 C 1.34772 * 120.00068 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99945 * 359.97438 * 9 8 7 11 11 C 1.50695 * 119.99903 * 180.02562 * 9 8 7 12 12 H 1.08994 * 109.47361 * 60.00077 * 11 9 8 13 13 C 1.53006 * 109.47149 * 299.99703 * 11 9 8 14 14 C 1.50703 * 109.47444 * 179.97438 * 11 9 8 15 15 H 1.08001 * 119.99661 * 35.10155 * 14 11 9 16 16 C 1.37868 * 120.00446 * 215.10473 * 14 11 9 17 17 N 1.31514 * 120.00218 * 184.90897 * 16 14 11 18 18 Si 1.86802 * 120.00093 * 4.90794 * 16 14 11 19 19 H 1.48496 * 109.47292 * 84.82010 * 18 16 14 20 20 H 1.48494 * 109.47356 * 204.82457 * 18 16 14 21 21 H 1.48500 * 109.46883 * 324.82243 * 18 16 14 22 22 N 1.32323 * 120.70529 * 359.48864 * 6 5 4 23 23 C 1.32005 * 121.67994 * 0.25960 * 22 6 5 24 24 H 1.08997 * 109.47237 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47434 * 300.00057 * 1 2 3 26 26 H 1.09001 * 109.47198 * 60.00091 * 1 2 3 27 27 H 1.08001 * 120.77312 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.43099 * 180.26838 * 5 4 3 29 29 H 0.97005 * 119.99808 * 359.72203 * 7 6 5 30 30 H 0.96994 * 119.99574 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.46618 * 55.07290 * 13 11 9 32 32 H 1.08997 * 109.46976 * 295.07295 * 13 11 9 33 33 H 1.08994 * 109.47083 * 175.07416 * 13 11 9 34 34 H 0.97002 * 120.00048 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.60898 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4366 1.2943 0.0005 5 6 4.0227 2.5469 -0.0043 6 6 3.2095 3.6754 0.0010 7 7 3.7887 4.9418 0.0010 8 7 2.9767 6.0835 0.0005 9 6 3.5373 7.3091 0.0010 10 8 4.7447 7.4237 0.0023 11 6 2.6639 8.5371 0.0010 12 1 2.0343 8.5352 0.8908 13 6 1.7809 8.5351 -1.2485 14 6 3.5305 9.7701 0.0023 15 1 4.4674 9.7720 -0.5350 16 6 3.1274 10.8954 0.6892 17 7 3.8344 12.0016 0.6116 18 14 1.5769 10.8490 1.7300 19 1 1.9003 10.3122 3.0763 20 1 1.0289 12.2227 1.8634 21 1 0.5689 9.9751 1.0778 22 7 1.8915 3.5585 0.0005 23 6 1.3002 2.3783 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0431 0.4006 0.0005 28 1 5.0980 2.6477 -0.0084 29 1 4.7544 5.0335 0.0013 30 1 2.0111 5.9918 -0.0002 31 1 1.2182 7.6027 -1.2941 32 1 2.4071 8.6253 -2.1361 33 1 1.0884 9.3757 -1.2055 34 1 3.5510 12.7933 1.0953 35 1 0.2217 2.3218 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832647000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:04 Heat of formation + Delta-G solvation = -22.596499 kcal Electronic energy + Delta-G solvation = -19291.174182 eV Core-core repulsion = 16097.261780 eV Total energy + Delta-G solvation = -3193.912402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64634 -40.67923 -39.14570 -36.65889 -35.69138 -33.72330 -33.40174 -32.28528 -29.21986 -28.11203 -27.24587 -25.01837 -23.97236 -23.43632 -21.44022 -19.53691 -19.15092 -18.85483 -18.47105 -17.26668 -17.02291 -16.70147 -16.22196 -16.11415 -15.44843 -15.19174 -14.95666 -14.85677 -14.44830 -14.34936 -14.10982 -13.67288 -13.21354 -13.00526 -12.86215 -12.67217 -12.60708 -12.21119 -12.01532 -11.75689 -11.29086 -10.78935 -10.74555 -10.70035 -10.46501 -9.99307 -8.28354 -8.19791 -6.35888 0.18902 0.41037 1.04256 1.37880 1.40873 1.50345 1.77841 2.35410 2.40117 2.83906 2.89758 3.08967 3.72766 3.78349 3.95548 4.04771 4.35052 4.36945 4.47245 4.48347 4.65571 4.69412 4.77372 4.81958 4.90362 5.00919 5.09401 5.36553 5.46040 5.54884 5.80925 6.18456 6.29876 6.40232 6.63165 6.78155 7.07149 7.26183 7.52379 8.89190 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035247 B = 0.003899 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.194346 B = 7180.489180 C = 7667.261789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.012 3.988 4 C -0.057 4.057 5 C -0.189 4.189 6 C 0.356 3.644 7 N -0.530 5.530 8 N -0.516 5.516 9 C 0.517 3.483 10 O -0.581 6.581 11 C 0.006 3.994 12 H 0.075 0.925 13 C -0.130 4.130 14 C -0.508 4.508 15 H 0.027 0.973 16 C 0.010 3.990 17 N -0.948 5.948 18 Si 0.944 3.056 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.222 1.222 22 N -0.537 5.537 23 C 0.064 3.936 24 H 0.119 0.881 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.438 0.562 30 H 0.434 0.566 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 -25.817 -0.404 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C -0.038 4.038 4 C -0.083 4.083 5 C -0.214 4.214 6 C 0.121 3.879 7 N -0.262 5.262 8 N -0.263 5.263 9 C 0.305 3.695 10 O -0.458 6.458 11 C -0.017 4.017 12 H 0.093 0.907 13 C -0.188 4.188 14 C -0.546 4.546 15 H 0.045 0.955 16 C -0.187 4.187 17 N -0.588 5.588 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.145 1.145 22 N -0.257 5.257 23 C -0.093 4.093 24 H 0.138 0.862 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.186 0.814 28 H 0.180 0.820 29 H 0.282 0.718 30 H 0.277 0.723 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.245 -24.868 -0.363 26.898 hybrid contribution 0.264 0.128 0.421 0.513 sum -9.981 -24.740 0.058 26.677 Atomic orbital electron populations 1.23334 0.76672 1.05675 1.02173 1.86052 1.23094 1.25320 1.89563 1.19832 0.93459 0.85947 1.04525 1.20921 0.91870 0.98248 0.97293 1.21286 1.01836 0.89758 1.08566 1.18460 0.89661 0.84016 0.95744 1.43328 1.05791 0.94500 1.82556 1.45102 1.07731 0.97124 1.76367 1.21927 0.89697 0.83302 0.74544 1.90572 1.17084 1.86625 1.51512 1.19257 0.94531 0.89105 0.98795 0.90684 1.21886 0.98432 1.01866 0.96604 1.20821 1.05751 0.95907 1.32151 0.95502 1.26041 1.01001 0.94362 0.97340 1.70059 1.42020 1.02779 1.43911 0.85801 0.79772 0.78528 0.79346 1.19511 1.20901 1.14459 1.66864 1.09856 1.28916 1.20063 1.22860 1.01125 0.85686 0.99596 0.86234 0.91850 0.91817 0.81421 0.81974 0.71821 0.72296 0.91085 0.94048 0.91780 0.92253 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 113.37 1.11 1.25 16 2 O -0.33 -5.36 10.51 -93.76 -0.99 -6.34 16 3 C 0.01 0.22 6.71 22.57 0.15 0.37 16 4 C -0.06 -1.00 10.12 22.53 0.23 -0.77 16 5 C -0.19 -3.77 9.93 22.49 0.22 -3.55 16 6 C 0.36 9.36 7.60 132.99 1.01 10.37 16 7 N -0.53 -16.37 6.43 -55.34 -0.36 -16.73 16 8 N -0.52 -17.97 6.15 -173.54 -1.07 -19.04 16 9 C 0.52 23.02 7.26 87.66 0.64 23.66 16 10 O -0.58 -30.86 15.61 -3.03 -0.05 -30.91 16 11 C 0.01 0.29 2.30 -12.28 -0.03 0.26 16 12 H 0.08 3.16 5.29 -2.39 -0.01 3.14 16 13 C -0.13 -4.90 9.12 71.98 0.66 -4.25 16 14 C -0.51 -29.90 8.36 25.60 0.21 -29.69 16 15 H 0.03 1.85 7.61 -2.91 -0.02 1.83 16 16 C 0.01 0.57 5.47 84.65 0.46 1.03 16 17 N -0.95 -60.16 13.96 21.44 0.30 -59.86 16 18 Si 0.94 41.96 26.99 68.60 1.85 43.82 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.22 -8.38 6.82 99.48 0.68 -7.70 16 22 N -0.54 -13.89 9.37 -192.77 -1.81 -15.70 16 23 C 0.06 1.30 10.21 84.72 0.87 2.16 16 24 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.46 7.68 -2.39 -0.02 0.44 16 26 H 0.06 0.46 7.67 -2.39 -0.02 0.44 16 27 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.44 13.38 8.00 -213.31 -1.71 11.67 16 30 H 0.43 13.28 7.31 -213.33 -1.56 11.72 16 31 H 0.07 2.08 7.43 -2.39 -0.02 2.06 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.18 2.55 6.30 -2.91 -0.02 2.53 16 Total: -1.00 -77.92 303.08 1.27 -76.66 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -2.16 Total: 27.26 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.53 Total: 0.84 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -2.93 Total: -111.33 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.03 Total: -37.25 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.85 Total: 43.82 kcal Total: -77.92 1.27 -76.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832647000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.061 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds