Wall clock time and date at job start Mon Mar 30 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48506 * 109.47230 * 270.00568 * 3 2 1 5 5 H 1.48498 * 109.47149 * 30.00339 * 3 2 1 6 6 H 1.48497 * 109.47291 * 150.00424 * 3 2 1 7 7 C 1.37877 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99981 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00435 * 180.02562 * 7 2 1 10 10 C 1.53509 * 114.17318 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.92936 * 220.13619 * 10 9 7 12 12 C 1.46899 * 111.00017 * 138.70362 * 11 10 9 13 13 C 1.52997 * 109.47254 * 169.99694 * 12 11 10 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 13 12 11 17 17 C 1.38268 * 119.98806 * 265.00365 * 16 13 12 18 18 C 1.38223 * 120.04703 * 179.97438 * 17 16 13 19 19 C 1.38223 * 120.03149 * 359.97438 * 18 17 16 20 20 C 1.38436 * 119.97020 * 359.97438 * 19 18 17 21 21 F 1.35098 * 120.02221 * 180.02562 * 20 19 18 22 22 C 1.38177 * 119.98818 * 84.72659 * 16 13 12 23 23 C 1.47477 * 87.83990 * 27.00857 * 11 10 9 24 24 H 0.96998 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.09005 * 113.25216 * 312.94597 * 9 7 2 26 26 H 1.09000 * 113.47746 * 105.36950 * 10 9 7 27 27 H 1.08996 * 113.52744 * 334.90577 * 10 9 7 28 28 H 1.09002 * 109.47043 * 289.99765 * 12 11 10 29 29 H 1.09001 * 109.47354 * 49.99826 * 12 11 10 30 30 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 31 31 H 1.07995 * 119.97183 * 0.02562 * 17 16 13 32 32 H 1.08002 * 119.98070 * 180.02562 * 18 17 16 33 33 H 1.07995 * 120.01208 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00902 * 0.02562 * 22 16 13 35 35 H 1.09000 * 113.47846 * 87.75378 * 23 11 10 36 36 H 1.08998 * 113.47506 * 218.22798 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.1400 -2.5947 0.0000 11 7 5.1459 -2.0849 0.9505 12 6 5.4199 -3.0697 2.0055 13 6 6.6336 -2.6193 2.8209 14 1 6.4276 -1.6496 3.2738 15 8 7.7710 -2.5120 1.9624 16 6 6.9144 -3.6293 3.9035 17 6 6.4045 -3.4396 5.1746 18 6 6.6608 -4.3655 6.1684 19 6 7.4269 -5.4824 5.8924 20 6 7.9371 -5.6738 4.6198 21 9 8.6855 -6.7654 4.3488 22 6 7.6766 -4.7475 3.6241 23 6 4.1439 -1.0986 1.3956 24 1 -0.4849 0.8400 0.0004 25 1 3.9422 -0.5113 -0.7324 26 1 4.5600 -2.8821 -0.9639 27 1 3.4923 -3.3623 0.4234 28 1 4.5524 -3.1516 2.6603 29 1 5.6261 -4.0395 1.5526 30 1 8.0127 -3.3395 1.5244 31 1 5.8048 -2.5679 5.3909 32 1 6.2617 -4.2165 7.1609 33 1 7.6267 -6.2058 6.6690 34 1 8.0714 -4.8974 2.6300 35 1 3.4964 -1.4663 2.1917 36 1 4.5670 -0.1182 1.6144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849327724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:04 Heat of formation + Delta-G solvation = -34.036952 kcal Electronic energy + Delta-G solvation = -19464.581826 eV Core-core repulsion = 16250.253366 eV Total energy + Delta-G solvation = -3214.328459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.11530 -39.97000 -38.94278 -36.68074 -32.74063 -31.97466 -30.88414 -30.10786 -27.08838 -25.07059 -24.48987 -22.92860 -22.05861 -21.01701 -18.71159 -18.10450 -17.09150 -16.75646 -16.41486 -16.04484 -15.80397 -15.20154 -15.01136 -14.64311 -14.27265 -13.94124 -13.50858 -13.43262 -12.96689 -12.69689 -12.52069 -12.13529 -11.90182 -11.72633 -11.53767 -11.11589 -11.07964 -10.42059 -10.36558 -9.97735 -9.79737 -9.53872 -9.20219 -9.15680 -8.89465 -8.58446 -8.16068 -6.13296 -4.14154 0.88528 0.93483 3.28568 3.29515 3.37094 3.42164 3.93206 4.28011 4.40097 4.44136 4.49280 4.69262 4.86609 5.01837 5.06843 5.09793 5.17515 5.28682 5.54620 5.63464 5.76046 5.80069 5.85361 5.88944 6.03841 6.08903 6.22859 6.31107 6.39619 6.47844 6.61968 6.72135 6.92805 7.32434 7.62169 7.67174 7.81654 8.45679 8.89379 9.49685 10.99143 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.003977 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.904773 B = 7039.164117 C = 7177.987857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.001 3.999 10 C 0.008 3.992 11 N -0.472 5.472 12 C -0.007 4.007 13 C 0.157 3.843 14 H 0.110 0.890 15 O -0.539 6.539 16 C -0.081 4.081 17 C -0.120 4.120 18 C -0.088 4.088 19 C -0.159 4.159 20 C 0.100 3.900 21 F -0.141 7.141 22 C -0.147 4.147 23 C -0.014 4.014 24 H 0.265 0.735 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.368 0.632 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -8.972 10.978 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.121 4.121 11 N -0.194 5.194 12 C -0.136 4.136 13 C 0.097 3.903 14 H 0.128 0.872 15 O -0.343 6.343 16 C -0.082 4.082 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.178 4.178 20 C 0.080 3.920 21 F -0.120 7.120 22 C -0.166 4.166 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.215 0.785 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.191 -8.087 10.954 20.400 hybrid contribution -0.333 -0.364 0.305 0.580 sum 14.858 -8.452 11.259 20.468 Atomic orbital electron populations 1.69911 1.06439 1.27158 1.50109 1.25014 0.94642 0.99276 0.93913 0.86866 0.80740 0.83305 0.78779 1.20239 1.21503 1.18097 1.20919 0.88258 0.94514 1.51351 0.90853 1.20489 0.96187 0.92725 0.92425 1.23808 0.92465 0.99532 0.96263 1.68873 1.31266 1.09327 1.09927 1.23323 0.97514 0.97175 0.95630 1.20767 0.85793 0.96909 0.86845 0.87218 1.86664 1.47356 1.37652 1.62652 1.20618 0.96009 0.95433 0.96101 1.21138 1.00225 1.00194 0.92276 1.21025 0.96803 0.93043 0.99695 1.21153 1.00919 1.00104 0.95585 1.17644 0.94845 0.85013 0.94460 1.91500 1.74074 1.51890 1.94492 1.20860 1.01767 0.94448 0.99497 1.24475 0.92348 0.96056 1.01389 0.92568 0.92517 0.91497 0.92191 0.92764 0.91304 0.78486 0.84948 0.84808 0.84811 0.84832 0.91790 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.01 27.14 -169.99 -4.61 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -5.86 5.68 56.52 0.32 -5.54 16 7 C -0.51 -13.97 9.38 -34.44 -0.32 -14.29 16 8 H 0.07 2.17 8.06 -52.48 -0.42 1.74 16 9 C 0.00 0.03 2.95 -91.24 -0.27 -0.24 16 10 C 0.01 0.16 7.25 -7.54 -0.05 0.10 16 11 N -0.47 -8.67 6.20 -244.63 -1.52 -10.19 16 12 C -0.01 -0.10 4.46 -3.83 -0.02 -0.12 16 13 C 0.16 2.06 3.48 -27.89 -0.10 1.96 16 14 H 0.11 1.51 8.05 -51.93 -0.42 1.09 16 15 O -0.54 -7.42 13.00 -35.23 -0.46 -7.88 16 16 C -0.08 -0.92 5.00 -104.63 -0.52 -1.44 16 17 C -0.12 -1.22 9.68 -39.58 -0.38 -1.61 16 18 C -0.09 -0.78 10.04 -39.59 -0.40 -1.17 16 19 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 20 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 21 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 22 C -0.15 -1.59 9.31 -39.52 -0.37 -1.96 16 23 C -0.01 -0.28 6.70 -7.54 -0.05 -0.33 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.06 1.34 7.04 -51.93 -0.37 0.97 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 28 H 0.05 0.82 7.30 -51.93 -0.38 0.44 16 29 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.37 3.85 7.40 45.56 0.34 4.19 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.24 6.62 -52.49 -0.35 0.89 16 35 H 0.06 1.32 7.38 -51.93 -0.38 0.94 16 36 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -30.53 304.04 -8.54 -39.07 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.08 Total: 3.91 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -3.26 Total: -18.22 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.74 Total: -36.29 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.46 Total: -7.88 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.61 Total: 16.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.53 -8.54 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849327724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.032 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds