Wall clock time and date at job start Mon Mar 30 2020 04:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47166 * 89.76218 * 3 2 1 5 5 C 1.36936 * 119.99598 * 264.22746 * 4 3 2 6 6 H 1.07998 * 119.99829 * 196.85987 * 5 4 3 7 7 C 1.38815 * 120.00176 * 16.86425 * 5 4 3 8 8 N 1.31614 * 120.00096 * 22.16136 * 7 5 4 9 9 Si 1.86808 * 119.99833 * 202.15887 * 7 5 4 10 10 H 1.48504 * 109.47024 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47105 * 120.00168 * 9 7 5 12 12 H 1.48505 * 109.46887 * 240.00013 * 9 7 5 13 13 C 1.46500 * 120.00151 * 84.22855 * 4 3 2 14 14 C 1.52996 * 109.46793 * 270.00010 * 13 4 3 15 15 N 1.46500 * 109.47180 * 180.02562 * 14 13 4 16 16 C 1.34773 * 124.17967 * 90.01949 * 15 14 13 17 17 O 1.21237 * 127.15187 * 359.93434 * 16 15 14 18 18 C 1.51580 * 105.68483 * 179.97438 * 16 15 14 19 19 N 1.47313 * 103.59618 * 0.02562 * 18 16 15 20 20 C 1.46496 * 126.69157 * 180.02562 * 19 18 16 21 21 C 1.33795 * 124.17647 * 269.72618 * 15 14 13 22 22 O 1.21536 * 123.77266 * 0.03856 * 21 15 14 23 23 H 4.40635 * 5.51424 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47452 * 329.75977 * 3 2 1 25 25 H 1.09003 * 109.47026 * 209.76271 * 3 2 1 26 26 H 0.97003 * 119.99827 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.46932 * 150.00413 * 13 4 3 28 28 H 1.08995 * 109.47060 * 29.99841 * 13 4 3 29 29 H 1.08995 * 109.47593 * 60.00023 * 14 13 4 30 30 H 1.09000 * 109.47599 * 299.99860 * 14 13 4 31 31 H 1.08998 * 110.59619 * 118.53266 * 18 16 15 32 32 H 1.08997 * 110.59699 * 241.47518 * 18 16 15 33 33 H 1.09002 * 109.46702 * 90.00110 * 20 19 18 34 34 H 1.08997 * 109.47081 * 209.99896 * 20 19 18 35 35 H 1.09003 * 109.47066 * 330.00542 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0049 -1.3812 5 6 3.4756 -1.1871 -1.9820 6 1 4.0804 -1.1833 -2.8768 7 6 3.0441 -2.3905 -1.4410 8 7 1.9905 -2.4175 -0.6527 9 14 3.9588 -3.9717 -1.8320 10 1 5.0992 -3.6734 -2.7352 11 1 4.4678 -4.5732 -0.5733 12 1 3.0362 -4.9254 -2.4987 13 6 3.2577 1.2544 -2.1196 14 6 1.9476 1.5451 -2.8544 15 7 2.0711 2.8040 -3.5934 16 6 2.5093 2.8960 -4.8645 17 8 2.8633 1.9871 -5.5845 18 6 2.4683 4.3722 -5.2063 19 7 1.9652 4.9996 -3.9721 20 6 1.7301 6.4283 -3.7494 21 6 1.7574 4.0040 -3.0915 22 8 1.3359 4.1758 -1.9646 23 1 -1.0499 0.0002 -0.0001 24 1 3.0098 -0.8870 0.5175 25 1 3.0090 0.8930 0.5102 26 1 1.6892 -3.2583 -0.2744 27 1 4.0696 1.1737 -2.8425 28 1 3.4709 2.0649 -1.4227 29 1 1.1358 1.6257 -2.1317 30 1 1.7343 0.7346 -3.5514 31 1 3.4672 4.7389 -5.4428 32 1 1.7853 4.5550 -6.0358 33 1 0.7075 6.6768 -4.0335 34 1 1.8812 6.6615 -2.6954 35 1 2.4265 7.0097 -4.3537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852009583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:31 Heat of formation + Delta-G solvation = 55.174056 kcal Electronic energy + Delta-G solvation = -20284.001974 eV Core-core repulsion = 17093.461956 eV Total energy + Delta-G solvation = -3190.540018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09527 -38.39781 -36.57498 -35.98518 -34.89278 -31.68407 -31.49006 -29.77852 -27.79172 -26.38123 -25.95934 -23.79339 -22.21464 -21.05821 -19.82011 -17.47506 -17.32550 -17.00803 -16.57025 -16.25312 -15.30412 -15.01313 -14.77502 -14.35302 -14.00210 -13.90745 -13.82178 -13.38149 -13.02529 -12.71800 -12.60484 -12.38419 -11.86161 -11.42333 -11.23963 -10.79550 -10.67252 -10.42249 -10.24325 -10.02424 -9.94681 -9.52948 -9.06138 -8.89143 -8.76372 -8.39694 -7.06041 -5.81084 -3.22545 1.78166 2.22329 3.06395 3.20049 3.37885 3.46339 3.48993 4.08396 4.20304 4.43341 4.54670 4.64672 4.87615 4.99644 5.23390 5.32262 5.42462 5.52884 5.55146 5.83003 5.89098 5.98470 6.05550 6.23549 6.34108 6.56065 6.69075 6.83414 7.23650 7.33726 7.44540 7.56067 7.76637 8.22307 8.26987 9.08497 9.21742 9.73334 10.19013 11.22372 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.005783 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.710440 B = 4840.946467 C = 5607.066988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.096 4.096 3 C 0.266 3.734 4 N -0.579 5.579 5 C -0.268 4.268 6 H 0.078 0.922 7 C 0.005 3.995 8 N -0.886 5.886 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.141 3.859 14 C 0.092 3.908 15 N -0.569 5.569 16 C 0.516 3.484 17 O -0.468 6.468 18 C 0.064 3.936 19 N -0.638 5.638 20 C 0.124 3.876 21 C 0.696 3.304 22 O -0.538 6.538 23 H 0.190 0.810 24 H 0.099 0.901 25 H 0.039 0.961 26 H 0.255 0.745 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 16.162 -6.774 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.099 4.099 3 C 0.141 3.859 4 N -0.298 5.298 5 C -0.397 4.397 6 H 0.096 0.904 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.731 3.269 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.012 3.988 14 C -0.030 4.030 15 N -0.315 5.315 16 C 0.302 3.698 17 O -0.338 6.338 18 C -0.063 4.063 19 N -0.379 5.379 20 C -0.018 4.018 21 C 0.398 3.602 22 O -0.411 6.411 23 H 0.207 0.793 24 H 0.117 0.883 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.526 15.637 -6.388 16.899 hybrid contribution -0.193 -1.008 -0.399 1.101 sum 0.333 14.629 -6.787 16.130 Atomic orbital electron populations 1.24164 0.95325 1.08024 1.04211 1.24236 0.95254 0.93890 0.96546 1.17883 0.82910 0.99424 0.85685 1.44224 1.74299 1.02086 1.09211 1.19313 1.26496 0.82830 1.11068 0.90404 1.24935 0.96364 0.97905 1.00213 1.70153 1.21434 1.25509 1.35823 0.86235 0.79549 0.83478 0.77593 1.20198 1.21471 1.21848 1.21183 0.93834 0.89185 0.94554 1.23064 1.03602 0.80226 0.96113 1.46783 1.59810 1.09644 1.15238 1.20829 0.76247 0.91042 0.81677 1.90832 1.44105 1.44894 1.53972 1.22477 1.03247 0.90835 0.89717 1.47517 1.69612 1.06999 1.13752 1.21437 1.01201 0.75836 1.03285 1.15993 0.78780 0.80720 0.84716 1.90981 1.49253 1.83610 1.17264 0.79311 0.88325 0.94298 0.93466 0.92884 0.93539 0.89069 0.88922 0.86421 0.86571 0.92350 0.90070 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.02 19.25 29.55 0.57 -6.45 16 2 C -0.10 -2.40 10.54 -37.12 -0.39 -2.79 16 3 C 0.27 6.44 5.45 -6.83 -0.04 6.40 16 4 N -0.58 -14.31 2.50 -176.58 -0.44 -14.75 16 5 C -0.27 -7.22 9.66 -15.06 -0.15 -7.36 16 6 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 7 C 0.01 0.15 4.85 -17.43 -0.08 0.06 16 8 N -0.89 -25.13 9.50 55.49 0.53 -24.60 16 9 Si 0.90 21.58 29.61 -169.99 -5.03 16.54 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.14 2.99 6.02 -4.04 -0.02 2.97 16 14 C 0.09 1.89 5.88 -4.04 -0.02 1.86 16 15 N -0.57 -9.63 2.60 -120.73 -0.31 -9.94 16 16 C 0.52 7.61 8.32 -10.55 -0.09 7.52 16 17 O -0.47 -8.41 17.76 5.59 0.10 -8.31 16 18 C 0.06 0.58 7.66 -4.32 -0.03 0.55 16 19 N -0.64 -7.08 3.42 -187.95 -0.64 -7.72 16 20 C 0.12 0.90 11.17 59.84 0.67 1.57 16 21 C 0.70 11.19 8.31 -88.01 -0.73 10.46 16 22 O -0.54 -10.56 17.15 5.33 0.09 -10.46 16 23 H 0.19 3.78 7.80 -54.10 -0.42 3.36 16 24 H 0.10 2.56 6.42 -51.93 -0.33 2.23 16 25 H 0.04 0.84 7.98 -51.93 -0.41 0.43 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 1.12 8.02 -51.93 -0.42 0.70 16 28 H 0.05 0.94 7.95 -51.93 -0.41 0.53 16 29 H 0.09 2.04 6.92 -51.93 -0.36 1.68 16 30 H 0.09 2.06 8.00 -51.93 -0.42 1.65 16 31 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 310.89 15.07 4.68 4.68 Total: -1.00 -33.53 310.89 -5.78 -39.32 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.43 Total: 0.46 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -0.32 Total: 14.79 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.87 Total: -57.02 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.19 Total: -18.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.53 -5.78 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.489 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds