Wall clock time and date at job start Mon Mar 30 2020 04:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47166 * 89.76218 * 3 2 1 5 5 C 1.36936 * 119.99598 * 264.22746 * 4 3 2 6 6 H 1.07998 * 119.99829 * 196.85987 * 5 4 3 7 7 C 1.38815 * 120.00176 * 16.86425 * 5 4 3 8 8 N 1.31614 * 120.00096 * 22.16136 * 7 5 4 9 9 Si 1.86808 * 119.99833 * 202.15887 * 7 5 4 10 10 H 1.48504 * 109.47024 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47105 * 120.00168 * 9 7 5 12 12 H 1.48505 * 109.46887 * 240.00013 * 9 7 5 13 13 C 1.46500 * 120.00151 * 84.22855 * 4 3 2 14 14 C 1.52996 * 109.46793 * 270.00010 * 13 4 3 15 15 N 1.46500 * 109.47180 * 180.02562 * 14 13 4 16 16 C 1.34773 * 124.17967 * 90.01949 * 15 14 13 17 17 O 1.21237 * 127.15187 * 359.93434 * 16 15 14 18 18 C 1.51580 * 105.68483 * 179.97438 * 16 15 14 19 19 N 1.47313 * 103.59618 * 0.02562 * 18 16 15 20 20 C 1.46496 * 126.69157 * 180.02562 * 19 18 16 21 21 C 1.33795 * 124.17647 * 269.72618 * 15 14 13 22 22 O 1.21536 * 123.77266 * 0.03856 * 21 15 14 23 23 H 4.40635 * 5.51424 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47452 * 329.75977 * 3 2 1 25 25 H 1.09003 * 109.47026 * 209.76271 * 3 2 1 26 26 H 0.97003 * 119.99827 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.46932 * 150.00413 * 13 4 3 28 28 H 1.08995 * 109.47060 * 29.99841 * 13 4 3 29 29 H 1.08995 * 109.47593 * 60.00023 * 14 13 4 30 30 H 1.09000 * 109.47599 * 299.99860 * 14 13 4 31 31 H 1.08998 * 110.59619 * 118.53266 * 18 16 15 32 32 H 1.08997 * 110.59699 * 241.47518 * 18 16 15 33 33 H 1.09002 * 109.46702 * 90.00110 * 20 19 18 34 34 H 1.08997 * 109.47081 * 209.99896 * 20 19 18 35 35 H 1.09003 * 109.47066 * 330.00542 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0049 -1.3812 5 6 3.4756 -1.1871 -1.9820 6 1 4.0804 -1.1833 -2.8768 7 6 3.0441 -2.3905 -1.4410 8 7 1.9905 -2.4175 -0.6527 9 14 3.9588 -3.9717 -1.8320 10 1 5.0992 -3.6734 -2.7352 11 1 4.4678 -4.5732 -0.5733 12 1 3.0362 -4.9254 -2.4987 13 6 3.2577 1.2544 -2.1196 14 6 1.9476 1.5451 -2.8544 15 7 2.0711 2.8040 -3.5934 16 6 2.5093 2.8960 -4.8645 17 8 2.8633 1.9871 -5.5845 18 6 2.4683 4.3722 -5.2063 19 7 1.9652 4.9996 -3.9721 20 6 1.7301 6.4283 -3.7494 21 6 1.7574 4.0040 -3.0915 22 8 1.3359 4.1758 -1.9646 23 1 -1.0499 0.0002 -0.0001 24 1 3.0098 -0.8870 0.5175 25 1 3.0090 0.8930 0.5102 26 1 1.6892 -3.2583 -0.2744 27 1 4.0696 1.1737 -2.8425 28 1 3.4709 2.0649 -1.4227 29 1 1.1358 1.6257 -2.1317 30 1 1.7343 0.7346 -3.5514 31 1 3.4672 4.7389 -5.4428 32 1 1.7853 4.5550 -6.0358 33 1 0.7075 6.6768 -4.0335 34 1 1.8812 6.6615 -2.6954 35 1 2.4265 7.0097 -4.3537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852009583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:28 Heat of formation + Delta-G solvation = 32.888047 kcal Electronic energy + Delta-G solvation = -20284.968368 eV Core-core repulsion = 17093.461956 eV Total energy + Delta-G solvation = -3191.506412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.27770 -39.65856 -38.34548 -37.22306 -36.24926 -33.61095 -33.29958 -31.11673 -29.08585 -27.97108 -27.32505 -25.48259 -23.37258 -22.81983 -21.07763 -19.41746 -18.66031 -18.15720 -18.13878 -17.62321 -16.93170 -16.49491 -15.90080 -15.71173 -15.52551 -15.40598 -15.13635 -14.84725 -14.63943 -14.23389 -13.58075 -13.37166 -13.35507 -13.22878 -13.14612 -12.71294 -12.26732 -12.19858 -11.99305 -11.82038 -11.28972 -11.07677 -10.78939 -10.73436 -10.34043 -9.93494 -9.05280 -7.88323 -5.31850 0.63361 1.10328 1.46521 1.49646 1.59692 1.96028 2.08340 2.30003 2.50627 2.57897 3.07464 3.24197 3.70479 3.74608 4.03955 4.09500 4.27093 4.32222 4.40632 4.44632 4.51183 4.70281 4.72417 4.84589 4.95335 5.05711 5.12637 5.25196 5.45855 5.58850 5.64445 6.15669 6.22176 6.40111 7.02431 7.04764 7.31476 7.72936 8.16281 9.13481 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.005783 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.710440 B = 4840.946467 C = 5607.066988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.129 4.129 3 C 0.269 3.731 4 N -0.592 5.592 5 C -0.276 4.276 6 H 0.073 0.927 7 C -0.040 4.040 8 N -0.911 5.911 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.297 1.297 13 C 0.148 3.852 14 C 0.113 3.887 15 N -0.580 5.580 16 C 0.507 3.493 17 O -0.508 6.508 18 C 0.082 3.918 19 N -0.621 5.621 20 C 0.116 3.884 21 C 0.687 3.313 22 O -0.584 6.584 23 H 0.219 0.781 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.249 0.751 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 18.323 -8.463 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.132 4.132 3 C 0.144 3.856 4 N -0.312 5.312 5 C -0.406 4.406 6 H 0.091 0.909 7 C -0.237 4.237 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.225 1.225 13 C 0.021 3.979 14 C -0.011 4.011 15 N -0.325 5.325 16 C 0.297 3.703 17 O -0.380 6.380 18 C -0.043 4.043 19 N -0.360 5.360 20 C -0.024 4.024 21 C 0.389 3.611 22 O -0.461 6.461 23 H 0.236 0.764 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.015 17.881 -8.130 19.669 hybrid contribution -0.359 -1.557 0.066 1.599 sum 0.656 16.324 -8.064 18.219 Atomic orbital electron populations 1.24945 0.96332 1.06872 1.03067 1.24577 0.96023 0.94971 0.97654 1.17806 0.82966 0.99319 0.85548 1.44312 1.74614 1.02508 1.09751 1.19486 1.26232 0.83953 1.10890 0.90875 1.25593 0.97029 1.00451 1.00597 1.70302 1.22557 1.25625 1.36972 0.85275 0.78351 0.79850 0.77280 1.19416 1.21317 1.22459 1.21142 0.94146 0.88139 0.94518 1.22340 1.02008 0.81575 0.95174 1.46725 1.60561 1.08999 1.16247 1.21828 0.74667 0.93515 0.80284 1.90814 1.45706 1.46935 1.54549 1.22740 1.06564 0.85546 0.89413 1.47738 1.67762 1.07421 1.13126 1.21816 1.03406 0.73562 1.03566 1.16180 0.78822 0.81206 0.84860 1.90946 1.51549 1.84188 1.19397 0.76379 0.90551 0.92106 0.94093 0.92866 0.92608 0.91345 0.91521 0.82132 0.82418 0.90952 0.91399 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.89 19.25 74.32 1.43 -12.46 16 2 C -0.13 -6.58 10.54 31.12 0.33 -6.25 16 3 C 0.27 13.34 5.45 84.57 0.46 13.80 16 4 N -0.59 -29.95 2.50 -712.56 -1.78 -31.73 16 5 C -0.28 -15.17 9.66 84.03 0.81 -14.35 16 6 H 0.07 4.00 7.90 -2.91 -0.02 3.98 16 7 C -0.04 -2.20 4.85 84.86 0.41 -1.79 16 8 N -0.91 -52.73 9.50 21.65 0.21 -52.53 16 9 Si 0.96 45.07 29.61 68.60 2.03 47.10 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 C 0.15 6.43 6.02 86.38 0.52 6.95 16 14 C 0.11 4.78 5.88 86.38 0.51 5.28 16 15 N -0.58 -19.44 2.60 -773.12 -2.01 -21.46 16 16 C 0.51 14.17 8.32 87.94 0.73 14.90 16 17 O -0.51 -17.96 17.76 -2.90 -0.05 -18.01 16 18 C 0.08 1.12 7.66 85.76 0.66 1.78 16 19 N -0.62 -11.64 3.42 -866.97 -2.96 -14.60 16 20 C 0.12 1.21 11.17 127.77 1.43 2.64 16 21 C 0.69 21.37 8.31 179.44 1.49 22.87 16 22 O -0.58 -23.02 17.15 -3.83 -0.07 -23.09 16 23 H 0.22 8.56 7.80 -4.42 -0.03 8.52 16 24 H 0.08 4.11 6.42 -2.39 -0.02 4.09 16 25 H 0.06 2.68 7.98 -2.39 -0.02 2.66 16 26 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.05 2.28 8.02 -2.39 -0.02 2.26 16 28 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 29 H 0.07 3.18 6.92 -2.39 -0.02 3.17 16 30 H 0.07 3.11 8.00 -2.39 -0.02 3.09 16 31 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 35 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -76.16 310.89 5.22 -70.94 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.09 Total: 10.01 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 8.78 Total: 33.37 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -6.56 Total: -120.32 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.12 Total: -41.10 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.16 5.22 -70.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.828 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds