Wall clock time and date at job start Mon Mar 30 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 111.01967 * 2 1 4 4 C 1.54944 * 111.12721 * 124.22392 * 2 1 3 5 5 O 1.43645 * 105.22260 * 154.41085 * 4 2 1 6 6 C 1.43235 * 109.97529 * 335.52671 * 5 4 2 7 7 H 1.08992 * 109.83670 * 121.31577 * 6 5 4 8 8 C 1.50705 * 109.82925 * 242.19855 * 6 5 4 9 9 O 1.21304 * 119.99549 * 3.54204 * 8 6 5 10 10 N 1.34777 * 120.00012 * 183.54011 * 8 6 5 11 11 C 1.40591 * 119.99837 * 179.97438 * 10 8 6 12 12 C 1.40645 * 126.08473 * 359.69916 * 11 10 8 13 13 N 1.30910 * 108.38901 * 179.81121 * 12 11 10 14 14 N 1.40068 * 108.40506 * 0.43960 * 13 12 11 15 15 C 1.37322 * 126.07014 * 179.73934 * 14 13 12 16 16 H 1.07998 * 120.00334 * 179.97438 * 15 14 13 17 17 C 1.38989 * 119.99894 * 359.97438 * 15 14 13 18 18 N 1.31299 * 119.99722 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47349 * 59.99937 * 19 17 15 21 21 H 1.48505 * 109.47128 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47290 * 300.00041 * 19 17 15 23 23 C 1.35685 * 126.08209 * 180.02562 * 11 10 8 24 24 C 1.54383 * 107.58532 * 1.70714 * 6 5 4 25 25 H 1.09000 * 109.47128 * 297.23595 * 1 2 3 26 26 H 1.09004 * 109.47181 * 57.22731 * 1 2 3 27 27 H 1.08993 * 109.47156 * 177.23069 * 1 2 3 28 28 H 1.09002 * 110.30953 * 35.44661 * 4 2 1 29 29 H 1.09000 * 110.30834 * 273.37735 * 4 2 1 30 30 H 0.97002 * 119.99777 * 0.02562 * 10 8 6 31 31 H 1.08005 * 125.80492 * 359.97438 * 12 11 10 32 32 H 0.97003 * 119.99523 * 180.02562 * 18 17 15 33 33 H 1.08001 * 126.24387 * 359.97438 * 23 11 10 34 34 H 1.09007 * 110.84628 * 139.55316 * 24 6 5 35 35 H 1.09002 * 110.85103 * 262.96257 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9209 1.0175 0.0000 4 6 2.0884 -0.8129 1.1950 5 8 3.3905 -1.2523 0.7767 6 6 3.4538 -1.3026 -0.6534 7 1 4.2507 -0.6508 -1.0114 8 6 3.7096 -2.7176 -1.1044 9 8 3.7634 -3.6138 -0.2886 10 7 3.8785 -2.9874 -2.4140 11 6 4.1176 -4.3074 -2.8347 12 6 4.2116 -5.4377 -2.0029 13 7 4.4361 -6.4859 -2.7544 14 7 4.5042 -6.0667 -4.0891 15 6 4.7312 -6.8712 -5.1786 16 1 4.7638 -6.4423 -6.1692 17 6 4.9191 -8.2375 -5.0065 18 7 4.8791 -8.7591 -3.8022 19 14 5.2286 -9.3318 -6.4884 20 1 6.4618 -8.8850 -7.1848 21 1 5.3959 -10.7374 -6.0395 22 1 4.0748 -9.2428 -7.4190 23 6 4.3050 -4.7167 -4.1147 24 6 2.0932 -0.8172 -1.1979 25 1 -0.3633 0.4703 0.9137 26 1 -0.3634 0.5563 -0.8641 27 1 -0.3633 -1.0264 -0.0496 28 1 1.4480 -1.6704 1.4016 29 1 2.1686 -0.1798 2.0787 30 1 3.8357 -2.2707 -3.0663 31 1 4.1124 -5.4408 -0.9274 32 1 5.0106 -9.7126 -3.6820 33 1 4.2971 -4.0889 -4.9934 34 1 2.2300 -0.1802 -2.0718 35 1 1.4459 -1.6620 -1.4335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900441447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:59 Heat of formation + Delta-G solvation = -0.139941 kcal Electronic energy + Delta-G solvation = -19676.266279 eV Core-core repulsion = 16483.327666 eV Total energy + Delta-G solvation = -3192.938613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.33402 -39.43322 -37.83157 -34.24764 -33.64960 -33.12504 -30.64901 -30.03460 -27.58851 -26.55363 -24.96925 -23.45137 -21.05834 -20.86445 -19.98785 -19.35719 -17.65785 -16.94387 -16.62017 -15.70032 -15.42008 -15.06946 -14.56845 -14.38407 -13.91675 -13.60793 -13.51466 -13.16992 -12.94788 -12.85456 -12.41833 -11.77769 -11.66173 -11.44984 -11.36854 -11.22299 -11.16163 -10.92849 -10.87969 -10.54530 -10.12061 -9.99314 -9.13265 -8.87165 -8.73369 -8.02898 -6.66823 -6.53141 -4.20377 2.84332 3.04849 3.05831 3.10154 3.37960 3.68957 3.84367 3.95862 4.21402 4.46367 4.52649 4.68762 4.84117 4.94101 5.04395 5.11212 5.15880 5.30909 5.37863 5.49873 5.62778 5.67351 5.72463 5.81747 6.03520 6.26469 6.48176 6.81213 6.94567 7.00200 7.17879 7.27918 7.88518 8.22379 8.31538 8.67045 8.91015 9.40792 9.70154 10.42851 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.050412 B = 0.003753 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.289386 B = 7458.476161 C = 7649.687565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.089 0.911 4 C 0.052 3.948 5 O -0.351 6.351 6 C 0.071 3.929 7 H 0.103 0.897 8 C 0.484 3.516 9 O -0.519 6.519 10 N -0.624 5.624 11 C -0.059 4.059 12 C -0.034 4.034 13 N -0.260 5.260 14 N -0.143 5.143 15 C -0.324 4.324 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.935 3.065 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.085 4.085 24 C -0.143 4.143 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.395 0.605 31 H 0.175 0.825 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 16.410 1.860 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.025 4.025 5 O -0.268 6.268 6 C 0.009 3.991 7 H 0.120 0.880 8 C 0.269 3.731 9 O -0.394 6.394 10 N -0.268 5.268 11 C -0.165 4.165 12 C -0.209 4.209 13 N -0.091 5.091 14 N 0.089 4.911 15 C -0.457 4.457 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.397 5.397 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.235 4.235 24 C -0.181 4.181 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.228 0.772 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.108 0.892 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.840 14.209 2.730 15.603 hybrid contribution -0.146 0.904 -1.224 1.529 sum -5.987 15.113 1.506 16.325 Atomic orbital electron populations 1.21673 0.93514 1.02594 1.02133 1.22910 0.97008 0.99866 0.94724 0.89301 1.23529 0.84582 0.97425 0.96953 1.88517 1.31615 1.88323 1.18378 1.22559 0.99151 0.94120 0.83269 0.87976 1.20705 0.79134 0.90879 0.82395 1.90606 1.49552 1.46726 1.52536 1.42474 1.69703 1.07724 1.06897 1.17282 1.22297 0.84186 0.92689 1.24115 1.07535 0.89100 1.00193 1.78256 1.25277 1.19923 0.85692 1.44536 1.38105 1.02853 1.05573 1.19817 1.51291 0.89303 0.85256 0.86692 1.25640 0.95686 0.97610 0.98166 1.70216 1.35202 1.13213 1.21044 0.85897 0.79455 0.78705 0.80077 1.19181 1.20145 1.19185 1.21244 1.19055 0.87047 0.96198 1.23263 0.95201 1.00728 0.98941 0.92148 0.92072 0.92049 0.91818 0.89503 0.77182 0.80800 0.91425 0.83729 0.89161 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.31 37.16 0.35 -0.68 16 2 C -0.13 -1.08 3.70 -88.23 -0.33 -1.41 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.05 0.58 7.25 38.18 0.28 0.85 16 5 O -0.35 -5.33 10.56 -54.88 -0.58 -5.91 16 6 C 0.07 0.94 3.95 -27.16 -0.11 0.83 16 7 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 8 C 0.48 8.92 7.00 -10.98 -0.08 8.84 16 9 O -0.52 -12.10 13.68 -14.11 -0.19 -12.30 16 10 N -0.62 -11.23 5.45 -10.00 -0.05 -11.28 16 11 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 12 C -0.03 -0.93 10.85 -17.04 -0.18 -1.11 16 13 N -0.26 -7.75 10.40 30.80 0.32 -7.43 16 14 N -0.14 -3.98 3.74 -11.41 -0.04 -4.03 16 15 C -0.32 -8.68 10.25 -14.81 -0.15 -8.84 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 18 N -0.77 -21.84 11.81 55.50 0.66 -21.18 16 19 Si 0.93 19.07 29.55 -169.99 -5.02 14.05 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 24 C -0.14 -1.42 6.01 -24.64 -0.15 -1.57 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.40 5.32 8.83 -40.82 -0.36 4.96 16 31 H 0.18 4.77 5.92 -52.48 -0.31 4.46 16 32 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.98 7.72 -51.93 -0.40 0.58 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -35.23 300.37 -6.04 -41.27 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.41 Total: 8.41 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.24 Total: -6.14 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.88 Total: -43.92 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.77 Total: -18.20 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.23 -6.04 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900441447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.128 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds