Wall clock time and date at job start Mon Mar 30 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 111.01967 * 2 1 4 4 C 1.54944 * 111.12721 * 124.22392 * 2 1 3 5 5 O 1.43645 * 105.22260 * 154.41085 * 4 2 1 6 6 C 1.43235 * 109.97529 * 335.52671 * 5 4 2 7 7 H 1.08992 * 109.83670 * 121.31577 * 6 5 4 8 8 C 1.50705 * 109.82925 * 242.19855 * 6 5 4 9 9 O 1.21304 * 119.99549 * 3.54204 * 8 6 5 10 10 N 1.34777 * 120.00012 * 183.54011 * 8 6 5 11 11 C 1.40591 * 119.99837 * 179.97438 * 10 8 6 12 12 C 1.40645 * 126.08473 * 359.69916 * 11 10 8 13 13 N 1.30910 * 108.38901 * 179.81121 * 12 11 10 14 14 N 1.40068 * 108.40506 * 0.43960 * 13 12 11 15 15 C 1.37322 * 126.07014 * 179.73934 * 14 13 12 16 16 H 1.07998 * 120.00334 * 179.97438 * 15 14 13 17 17 C 1.38989 * 119.99894 * 359.97438 * 15 14 13 18 18 N 1.31299 * 119.99722 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47349 * 59.99937 * 19 17 15 21 21 H 1.48505 * 109.47128 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47290 * 300.00041 * 19 17 15 23 23 C 1.35685 * 126.08209 * 180.02562 * 11 10 8 24 24 C 1.54383 * 107.58532 * 1.70714 * 6 5 4 25 25 H 1.09000 * 109.47128 * 297.23595 * 1 2 3 26 26 H 1.09004 * 109.47181 * 57.22731 * 1 2 3 27 27 H 1.08993 * 109.47156 * 177.23069 * 1 2 3 28 28 H 1.09002 * 110.30953 * 35.44661 * 4 2 1 29 29 H 1.09000 * 110.30834 * 273.37735 * 4 2 1 30 30 H 0.97002 * 119.99777 * 0.02562 * 10 8 6 31 31 H 1.08005 * 125.80492 * 359.97438 * 12 11 10 32 32 H 0.97003 * 119.99523 * 180.02562 * 18 17 15 33 33 H 1.08001 * 126.24387 * 359.97438 * 23 11 10 34 34 H 1.09007 * 110.84628 * 139.55316 * 24 6 5 35 35 H 1.09002 * 110.85103 * 262.96257 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9209 1.0175 0.0000 4 6 2.0884 -0.8129 1.1950 5 8 3.3905 -1.2523 0.7767 6 6 3.4538 -1.3026 -0.6534 7 1 4.2507 -0.6508 -1.0114 8 6 3.7096 -2.7176 -1.1044 9 8 3.7634 -3.6138 -0.2886 10 7 3.8785 -2.9874 -2.4140 11 6 4.1176 -4.3074 -2.8347 12 6 4.2116 -5.4377 -2.0029 13 7 4.4361 -6.4859 -2.7544 14 7 4.5042 -6.0667 -4.0891 15 6 4.7312 -6.8712 -5.1786 16 1 4.7638 -6.4423 -6.1692 17 6 4.9191 -8.2375 -5.0065 18 7 4.8791 -8.7591 -3.8022 19 14 5.2286 -9.3318 -6.4884 20 1 6.4618 -8.8850 -7.1848 21 1 5.3959 -10.7374 -6.0395 22 1 4.0748 -9.2428 -7.4190 23 6 4.3050 -4.7167 -4.1147 24 6 2.0932 -0.8172 -1.1979 25 1 -0.3633 0.4703 0.9137 26 1 -0.3634 0.5563 -0.8641 27 1 -0.3633 -1.0264 -0.0496 28 1 1.4480 -1.6704 1.4016 29 1 2.1686 -0.1798 2.0787 30 1 3.8357 -2.2707 -3.0663 31 1 4.1124 -5.4408 -0.9274 32 1 5.0106 -9.7126 -3.6820 33 1 4.2971 -4.0889 -4.9934 34 1 2.2300 -0.1802 -2.0718 35 1 1.4459 -1.6620 -1.4335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900441447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:54 Heat of formation + Delta-G solvation = -25.659437 kcal Electronic energy + Delta-G solvation = -19677.372887 eV Core-core repulsion = 16483.327666 eV Total energy + Delta-G solvation = -3194.045221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83547 -41.00231 -39.27373 -35.95124 -35.03601 -34.46399 -32.34865 -31.50280 -29.36075 -27.31597 -26.82747 -24.68670 -22.87107 -21.92120 -21.36615 -21.12662 -19.37050 -18.18810 -17.89516 -17.39004 -16.81703 -16.55568 -15.99112 -15.86855 -15.31201 -15.13941 -14.84871 -14.54378 -14.32719 -13.86492 -13.49293 -13.34718 -13.17749 -12.88937 -12.86942 -12.65302 -12.17188 -12.13745 -11.94641 -11.82074 -11.59951 -11.12194 -11.00378 -10.82891 -10.24052 -10.11118 -8.53751 -8.46880 -6.24971 1.21631 1.39902 1.51626 1.56852 1.85464 1.98698 2.22148 2.48928 2.86059 2.97145 3.09240 3.41741 3.78463 3.79541 4.03995 4.16110 4.38358 4.43348 4.55778 4.60020 4.68088 4.79513 4.84824 4.92046 4.99466 5.04166 5.08579 5.23999 5.28835 5.40978 5.46541 5.89252 5.96116 6.31082 6.72896 6.76665 7.40014 7.47302 7.67392 8.52458 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.050412 B = 0.003753 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.289386 B = 7458.476161 C = 7649.687565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.116 0.884 4 C 0.040 3.960 5 O -0.385 6.385 6 C 0.077 3.923 7 H 0.139 0.861 8 C 0.478 3.522 9 O -0.576 6.576 10 N -0.610 5.610 11 C -0.046 4.046 12 C -0.065 4.065 13 N -0.311 5.311 14 N -0.167 5.167 15 C -0.355 4.355 16 H 0.144 0.856 17 C -0.008 4.008 18 N -0.827 5.827 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.252 1.252 23 C -0.078 4.078 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.422 0.578 31 H 0.160 0.840 32 H 0.276 0.724 33 H 0.192 0.808 34 H 0.130 0.870 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 19.360 -0.529 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.134 0.866 4 C -0.036 4.036 5 O -0.303 6.303 6 C 0.015 3.985 7 H 0.156 0.844 8 C 0.265 3.735 9 O -0.455 6.455 10 N -0.257 5.257 11 C -0.152 4.152 12 C -0.240 4.240 13 N -0.144 5.144 14 N 0.064 4.936 15 C -0.486 4.486 16 H 0.161 0.839 17 C -0.219 4.219 18 N -0.454 5.454 19 Si 0.840 3.160 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.176 1.176 23 C -0.228 4.228 24 C -0.176 4.176 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.259 0.741 31 H 0.177 0.823 32 H 0.086 0.914 33 H 0.209 0.791 34 H 0.149 0.851 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.290 17.242 0.326 18.356 hybrid contribution -0.049 0.107 -0.371 0.390 sum -6.339 17.349 -0.045 18.471 Atomic orbital electron populations 1.21680 0.92566 1.01997 1.03555 1.22914 0.97657 1.00320 0.92214 0.86630 1.23776 0.83124 0.97544 0.99182 1.88493 1.33659 1.88588 1.19528 1.22755 1.02365 0.90411 0.82921 0.84416 1.21946 0.76991 0.92828 0.81701 1.90589 1.51726 1.49112 1.54045 1.42393 1.69250 1.06247 1.07792 1.17379 1.20006 0.85781 0.92025 1.24100 1.09224 0.90697 0.99945 1.78152 1.27124 1.21704 0.87374 1.44855 1.39230 1.04466 1.05094 1.20632 1.51739 0.90169 0.86101 0.83909 1.26929 0.94443 0.99058 1.01501 1.70413 1.37233 1.13614 1.24184 0.84625 0.80112 0.75694 0.75582 1.17641 1.20436 1.17573 1.22020 1.16913 0.86194 0.97719 1.23334 0.92594 1.00835 1.00874 0.90939 0.90441 0.93719 0.93818 0.87425 0.74059 0.82275 0.91428 0.79068 0.85135 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.31 71.98 0.67 -0.98 16 2 C -0.11 -1.56 3.70 -9.25 -0.03 -1.59 16 3 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.04 0.83 7.25 72.65 0.53 1.36 16 5 O -0.38 -11.35 10.56 -130.19 -1.38 -12.73 16 6 C 0.08 1.88 3.95 30.32 0.12 2.00 16 7 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 8 C 0.48 17.47 7.00 87.66 0.61 18.08 16 9 O -0.58 -28.04 13.68 15.68 0.21 -27.83 16 10 N -0.61 -21.10 5.45 -303.92 -1.65 -22.75 16 11 C -0.05 -2.16 6.90 37.73 0.26 -1.90 16 12 C -0.06 -3.70 10.85 85.42 0.93 -2.77 16 13 N -0.31 -19.40 10.40 -56.46 -0.59 -19.98 16 14 N -0.17 -9.45 3.74 -190.01 -0.71 -10.16 16 15 C -0.36 -18.98 10.25 84.01 0.86 -18.12 16 16 H 0.14 6.51 7.83 -2.91 -0.02 6.49 16 17 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 18 N -0.83 -48.68 11.81 21.66 0.26 -48.43 16 19 Si 1.02 38.82 29.55 68.60 2.03 40.85 16 20 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 21 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 23 C -0.08 -3.64 11.49 83.38 0.96 -2.68 16 24 C -0.14 -2.30 6.01 31.95 0.19 -2.10 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.68 8.14 -2.38 -0.02 0.67 16 27 H 0.04 0.67 8.11 -2.39 -0.02 0.65 16 28 H 0.04 1.06 8.03 -2.39 -0.02 1.04 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.42 9.94 8.83 -92.71 -0.82 9.12 16 31 H 0.16 9.42 5.92 -2.91 -0.02 9.41 16 32 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.19 6.82 8.06 -2.91 -0.02 6.80 16 34 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.07 1.39 7.72 -2.39 -0.02 1.37 16 Total: -1.00 -83.20 300.37 4.03 -79.17 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.30 Total: 30.50 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.56 Total: -8.65 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -2.70 Total: -101.33 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.16 Total: -40.55 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -83.20 4.03 -79.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900441447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.513 kcal (2) G-P(sol) polarization free energy of solvation -83.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds