Wall clock time and date at job start Mon Mar 30 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 H 1.09006 * 109.46727 * 304.99933 * 3 2 1 5 5 C 1.52997 * 109.47036 * 185.00186 * 3 2 1 6 6 O 1.42904 * 109.47021 * 304.99795 * 5 3 2 7 7 N 1.46901 * 109.47028 * 64.99763 * 3 2 1 8 8 C 1.46909 * 110.99766 * 205.00026 * 7 3 2 9 9 C 1.50695 * 109.46692 * 180.02562 * 8 7 3 10 10 C 1.38326 * 119.96375 * 269.71591 * 9 8 7 11 11 C 1.38279 * 120.13760 * 179.76721 * 10 9 8 12 12 C 1.38129 * 120.06920 * 0.51899 * 11 10 9 13 13 C 1.38862 * 119.92666 * 359.74355 * 12 11 10 14 14 O 1.35753 * 120.06421 * 179.97438 * 13 12 11 15 15 C 1.34824 * 117.00388 * 354.48193 * 14 13 12 16 16 H 1.08007 * 119.99445 * 5.06378 * 15 14 13 17 17 C 1.38652 * 120.00630 * 185.05915 * 15 14 13 18 18 N 1.31559 * 119.99375 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00453 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47266 * 119.99958 * 19 17 15 22 22 H 1.48493 * 109.47185 * 239.99894 * 19 17 15 23 23 C 1.38076 * 119.96686 * 90.00172 * 9 8 7 24 24 H 1.08994 * 109.47461 * 300.00165 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.00250 * 1 2 3 26 26 H 1.08998 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47008 * 240.00109 * 2 1 3 28 28 H 1.09004 * 109.47079 * 119.99750 * 2 1 3 29 29 H 1.09003 * 109.47017 * 185.00300 * 5 3 2 30 30 H 1.08999 * 109.47374 * 64.99811 * 5 3 2 31 31 H 0.96697 * 113.99572 * 180.02562 * 6 5 3 32 32 H 1.00898 * 111.00140 * 328.95643 * 7 3 2 33 33 H 1.09000 * 109.47017 * 300.00204 * 8 7 3 34 34 H 1.09000 * 109.47120 * 60.00281 * 8 7 3 35 35 H 1.08001 * 119.93142 * 0.02562 * 10 9 8 36 36 H 1.08004 * 119.97012 * 180.25932 * 11 10 9 37 37 H 1.07992 * 120.03731 * 179.76434 * 12 11 10 38 38 H 0.97002 * 119.99761 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.03394 * 359.95620 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 8 4.1293 0.6404 0.9121 7 7 1.6513 2.0993 1.2552 8 6 1.5725 3.5563 1.0845 9 6 1.1727 4.1940 2.3901 10 6 -0.1649 4.3934 2.6805 11 6 -0.5360 4.9739 3.8795 12 6 0.4292 5.3662 4.7865 13 6 1.7730 5.1722 4.4954 14 8 2.7239 5.5572 5.3846 15 6 2.3047 6.2242 6.4787 16 1 1.2480 6.3581 6.6576 17 6 3.2300 6.7381 7.3743 18 7 4.5171 6.5752 7.1561 19 14 2.6492 7.6616 8.8906 20 1 1.1650 7.7062 8.9047 21 1 3.1346 6.9664 10.1098 22 1 3.1863 9.0457 8.8631 23 6 2.1423 4.5840 3.2926 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9355 2.4655 -0.0366 30 1 3.8499 1.0377 -1.0961 31 1 5.0951 0.5963 0.8941 32 1 0.7798 1.7282 1.6027 33 1 2.5454 3.9392 0.7764 34 1 0.8306 3.7932 0.3219 35 1 -0.9212 4.0914 1.9712 36 1 -1.5813 5.1245 4.1053 37 1 0.1389 5.8229 5.7210 38 1 5.1646 6.9351 7.7825 39 1 3.1866 4.4315 3.0635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037238338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:42 Heat of formation + Delta-G solvation = -59.161454 kcal Electronic energy + Delta-G solvation = -19665.051134 eV Core-core repulsion = 16573.093500 eV Total energy + Delta-G solvation = -3091.957634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.10968 -38.19719 -36.59528 -35.36652 -32.88179 -32.19884 -30.17187 -29.04528 -28.01627 -25.47325 -24.54548 -23.23500 -21.57008 -20.56468 -20.22629 -17.65277 -17.39049 -16.90796 -15.98806 -15.37401 -14.97402 -14.67171 -14.40295 -14.30718 -13.80577 -13.57934 -13.35265 -13.25229 -13.05779 -12.51655 -12.42825 -12.18430 -11.85634 -11.53234 -11.36609 -11.22707 -11.00134 -10.78141 -10.65258 -10.63533 -10.47930 -10.35716 -9.87677 -9.27881 -8.80590 -8.26249 -8.00058 -7.18220 -6.40076 -3.98956 2.17386 2.42112 3.15201 3.16503 3.22140 4.00379 4.20124 4.37106 4.70216 4.74834 4.90154 5.04822 5.11683 5.19825 5.32921 5.36487 5.44158 5.51333 5.59688 5.66395 5.73416 5.78330 5.83127 5.91863 5.97726 6.06833 6.23005 6.25606 6.42454 6.71775 6.97869 7.12011 7.17558 7.35551 7.39943 7.49364 7.57318 7.76033 7.87785 8.05204 9.05714 9.77287 10.78225 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003998 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.071023 B = 7001.791214 C = 7703.425177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C 0.086 3.914 4 H 0.052 0.948 5 C 0.088 3.912 6 O -0.555 6.555 7 N -0.668 5.668 8 C 0.105 3.895 9 C -0.047 4.047 10 C -0.208 4.208 11 C -0.076 4.076 12 C -0.233 4.233 13 C 0.152 3.848 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.164 4.164 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.371 0.629 32 H 0.344 0.656 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.269 0.731 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 -8.761 -13.946 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C -0.024 4.024 4 H 0.070 0.930 5 C 0.009 3.991 6 O -0.358 6.358 7 N -0.302 5.302 8 C -0.023 4.023 9 C -0.048 4.048 10 C -0.227 4.227 11 C -0.095 4.095 12 C -0.252 4.252 13 C 0.098 3.902 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.184 4.184 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.217 0.783 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.148 -8.793 -13.428 16.856 hybrid contribution -0.586 0.743 0.124 0.954 sum -5.734 -8.050 -13.304 16.573 Atomic orbital electron populations 1.21865 0.96196 1.01875 1.01635 1.21576 0.95175 0.95908 1.03207 1.21633 0.94025 0.95076 0.91625 0.93040 1.22168 0.93613 0.94214 0.89125 1.86590 1.24427 1.71597 1.53213 1.60458 1.38822 1.03223 1.27719 1.20867 1.00187 0.87451 0.93800 1.19138 0.92858 0.97934 0.94830 1.20411 0.94629 1.08990 0.98701 1.20681 0.97905 0.97228 0.93639 1.21177 0.92733 1.09341 1.01966 1.19365 0.88599 0.92584 0.89604 1.83983 1.31342 1.63887 1.29047 1.21368 0.93838 1.33188 0.98326 0.89100 1.25277 0.94832 0.97363 0.99083 1.70056 1.00378 1.43015 1.36385 0.85655 0.78862 0.78887 0.80059 1.19145 1.20170 1.20191 1.20014 0.99146 1.06162 0.93052 0.92429 0.93068 0.92437 0.91792 0.90009 0.93730 0.94271 0.78301 0.83543 0.90762 0.95066 0.88140 0.87612 0.85681 0.92149 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.74 37.16 0.36 -1.07 16 2 C -0.12 -1.24 5.24 -26.73 -0.14 -1.38 16 3 C 0.09 0.98 2.44 -67.71 -0.17 0.82 16 4 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 5 C 0.09 0.97 6.80 37.16 0.25 1.22 16 6 O -0.55 -6.95 12.83 -35.23 -0.45 -7.40 16 7 N -0.67 -9.44 6.25 -107.98 -0.67 -10.11 16 8 C 0.11 1.56 5.61 -4.97 -0.03 1.53 16 9 C -0.05 -0.87 5.39 -104.65 -0.56 -1.43 16 10 C -0.21 -3.67 9.70 -39.53 -0.38 -4.06 16 11 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 12 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 13 C 0.15 3.80 6.65 -39.11 -0.26 3.54 16 14 O -0.18 -5.25 9.76 0.06 0.00 -5.25 16 15 C -0.39 -11.17 9.49 30.89 0.29 -10.87 16 16 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 19 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.16 -3.63 9.64 -39.40 -0.38 -4.01 16 24 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 29 H 0.04 0.51 7.35 -51.93 -0.38 0.13 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.37 3.11 9.12 45.56 0.42 3.53 16 32 H 0.34 4.76 6.46 -39.29 -0.25 4.51 16 33 H 0.07 1.09 7.30 -51.93 -0.38 0.71 16 34 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 35 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -32.40 324.86 -7.18 -39.58 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.82 Total: 9.59 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.87 Total: -22.16 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.08 Total: -35.09 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.45 Total: -12.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.40 -7.18 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037238338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.584 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds