Wall clock time and date at job start Mon Mar 30 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 H 1.09006 * 109.46727 * 304.99933 * 3 2 1 5 5 C 1.52997 * 109.47036 * 185.00186 * 3 2 1 6 6 O 1.42904 * 109.47021 * 304.99795 * 5 3 2 7 7 N 1.46901 * 109.47028 * 64.99763 * 3 2 1 8 8 C 1.46909 * 110.99766 * 205.00026 * 7 3 2 9 9 C 1.50695 * 109.46692 * 180.02562 * 8 7 3 10 10 C 1.38326 * 119.96375 * 269.71591 * 9 8 7 11 11 C 1.38279 * 120.13760 * 179.76721 * 10 9 8 12 12 C 1.38129 * 120.06920 * 0.51899 * 11 10 9 13 13 C 1.38862 * 119.92666 * 359.74355 * 12 11 10 14 14 O 1.35753 * 120.06421 * 179.97438 * 13 12 11 15 15 C 1.34824 * 117.00388 * 354.48193 * 14 13 12 16 16 H 1.08007 * 119.99445 * 5.06378 * 15 14 13 17 17 C 1.38652 * 120.00630 * 185.05915 * 15 14 13 18 18 N 1.31559 * 119.99375 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00453 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47266 * 119.99958 * 19 17 15 22 22 H 1.48493 * 109.47185 * 239.99894 * 19 17 15 23 23 C 1.38076 * 119.96686 * 90.00172 * 9 8 7 24 24 H 1.08994 * 109.47461 * 300.00165 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.00250 * 1 2 3 26 26 H 1.08998 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47008 * 240.00109 * 2 1 3 28 28 H 1.09004 * 109.47079 * 119.99750 * 2 1 3 29 29 H 1.09003 * 109.47017 * 185.00300 * 5 3 2 30 30 H 1.08999 * 109.47374 * 64.99811 * 5 3 2 31 31 H 0.96697 * 113.99572 * 180.02562 * 6 5 3 32 32 H 1.00898 * 111.00140 * 328.95643 * 7 3 2 33 33 H 1.09000 * 109.47017 * 300.00204 * 8 7 3 34 34 H 1.09000 * 109.47120 * 60.00281 * 8 7 3 35 35 H 1.08001 * 119.93142 * 0.02562 * 10 9 8 36 36 H 1.08004 * 119.97012 * 180.25932 * 11 10 9 37 37 H 1.07992 * 120.03731 * 179.76434 * 12 11 10 38 38 H 0.97002 * 119.99761 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.03394 * 359.95620 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 8 4.1293 0.6404 0.9121 7 7 1.6513 2.0993 1.2552 8 6 1.5725 3.5563 1.0845 9 6 1.1727 4.1940 2.3901 10 6 -0.1649 4.3934 2.6805 11 6 -0.5360 4.9739 3.8795 12 6 0.4292 5.3662 4.7865 13 6 1.7730 5.1722 4.4954 14 8 2.7239 5.5572 5.3846 15 6 2.3047 6.2242 6.4787 16 1 1.2480 6.3581 6.6576 17 6 3.2300 6.7381 7.3743 18 7 4.5171 6.5752 7.1561 19 14 2.6492 7.6616 8.8906 20 1 1.1650 7.7062 8.9047 21 1 3.1346 6.9664 10.1098 22 1 3.1863 9.0457 8.8631 23 6 2.1423 4.5840 3.2926 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9355 2.4655 -0.0366 30 1 3.8499 1.0377 -1.0961 31 1 5.0951 0.5963 0.8941 32 1 0.7798 1.7282 1.6027 33 1 2.5454 3.9392 0.7764 34 1 0.8306 3.7932 0.3219 35 1 -0.9212 4.0914 1.9712 36 1 -1.5813 5.1245 4.1053 37 1 0.1389 5.8229 5.7210 38 1 5.1646 6.9351 7.7825 39 1 3.1866 4.4315 3.0635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037238338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:42 Heat of formation + Delta-G solvation = -83.652145 kcal Electronic energy + Delta-G solvation = -19666.113130 eV Core-core repulsion = 16573.093500 eV Total energy + Delta-G solvation = -3093.019630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80948 -39.32183 -38.19386 -36.40980 -34.35408 -33.89645 -31.52294 -30.62303 -29.08778 -27.41192 -25.91123 -24.11196 -23.21321 -22.22499 -21.12630 -19.50978 -18.76548 -18.28558 -17.11388 -16.67432 -16.38534 -16.28819 -16.05553 -15.46957 -15.31137 -14.98196 -14.68666 -14.41760 -14.12872 -14.04573 -13.73571 -13.50761 -13.18883 -12.96119 -12.86137 -12.48574 -12.41108 -12.21708 -12.09331 -11.90571 -11.72844 -11.46546 -11.15320 -10.81475 -10.75405 -9.67032 -9.25537 -8.96759 -8.46283 -6.14990 0.54043 0.75471 1.34859 1.43704 1.53677 2.18213 2.79344 3.10783 3.37967 3.50972 3.56355 3.92933 3.98700 4.12574 4.17342 4.29430 4.33630 4.42768 4.53078 4.59864 4.64214 4.67671 4.74073 4.76877 4.84731 4.97570 5.11058 5.13415 5.13810 5.29913 5.31712 5.46487 5.67830 5.74439 5.78424 6.03879 6.14967 6.27462 6.51734 6.98261 7.02545 7.80555 8.77538 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003998 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.071023 B = 7001.791214 C = 7703.425177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.084 3.916 4 H 0.072 0.928 5 C 0.082 3.918 6 O -0.580 6.580 7 N -0.687 5.687 8 C 0.111 3.889 9 C -0.038 4.038 10 C -0.183 4.183 11 C -0.071 4.071 12 C -0.245 4.245 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.021 2.979 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.183 4.183 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.386 0.614 32 H 0.345 0.655 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -9.291 -15.806 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.025 4.025 4 H 0.090 0.910 5 C 0.004 3.996 6 O -0.387 6.387 7 N -0.322 5.322 8 C -0.017 4.017 9 C -0.038 4.038 10 C -0.202 4.202 11 C -0.089 4.089 12 C -0.265 4.265 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.174 1.174 21 H -0.193 1.193 22 H -0.192 1.192 23 C -0.203 4.203 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.159 -9.350 -15.339 19.731 hybrid contribution 0.207 0.740 0.407 0.870 sum -7.952 -8.610 -14.932 18.982 Atomic orbital electron populations 1.21842 0.95093 1.02506 1.01826 1.21512 0.96090 0.94993 1.02702 1.21776 0.94219 0.95622 0.90914 0.91015 1.22316 0.93606 0.93720 0.90007 1.86544 1.26021 1.71905 1.54207 1.60392 1.39164 1.02761 1.29844 1.20824 1.00929 0.87847 0.92117 1.19590 0.92681 0.96262 0.95305 1.20989 0.95058 1.05634 0.98547 1.21139 0.99091 0.95669 0.93005 1.21301 0.92422 1.09969 1.02771 1.19924 0.89502 0.94201 0.90300 1.83944 1.33480 1.66309 1.30485 1.21881 0.94667 1.33658 0.98813 0.88121 1.26620 0.94789 0.98146 1.02605 1.70206 1.02014 1.45449 1.38384 0.84506 0.79130 0.77307 0.75087 1.17419 1.19338 1.19246 1.20184 0.99558 1.07151 0.93379 0.93200 0.91763 0.91704 0.90266 0.92527 0.94763 0.91524 0.76631 0.83378 0.91199 0.91924 0.83428 0.83558 0.86471 0.91878 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.74 71.98 0.70 -1.63 16 2 C -0.12 -2.08 5.24 30.60 0.16 -1.92 16 3 C 0.08 1.69 2.44 44.91 0.11 1.80 16 4 H 0.07 1.18 7.80 -2.38 -0.02 1.16 16 5 C 0.08 1.67 6.80 71.98 0.49 2.16 16 6 O -0.58 -14.26 12.83 -148.98 -1.91 -16.17 16 7 N -0.69 -17.92 6.25 -495.56 -3.10 -21.02 16 8 C 0.11 2.99 5.61 85.55 0.48 3.47 16 9 C -0.04 -1.32 5.39 -19.88 -0.11 -1.43 16 10 C -0.18 -5.72 9.70 22.30 0.22 -5.50 16 11 C -0.07 -2.47 10.04 22.25 0.22 -2.25 16 12 C -0.25 -11.05 9.17 22.39 0.21 -10.84 16 13 C 0.11 5.79 6.65 22.58 0.15 5.94 16 14 O -0.24 -14.79 9.76 -22.71 -0.22 -15.01 16 15 C -0.41 -24.92 9.49 67.92 0.64 -24.28 16 16 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 17 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 18 N -0.92 -58.11 13.67 21.61 0.30 -57.81 16 19 Si 1.02 43.88 29.55 68.60 2.03 45.91 16 20 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.18 -8.35 9.64 22.39 0.22 -8.13 16 24 H 0.05 0.82 6.43 -2.39 -0.02 0.81 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.32 7.73 -2.39 -0.02 1.30 16 29 H 0.03 0.76 7.35 -2.39 -0.02 0.74 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.39 6.40 9.12 -74.06 -0.68 5.73 16 32 H 0.35 8.64 6.46 -89.70 -0.58 8.06 16 33 H 0.07 1.95 7.30 -2.39 -0.02 1.94 16 34 H 0.06 1.32 8.00 -2.39 -0.02 1.31 16 35 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -75.89 324.86 0.86 -75.03 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.19 Total: 32.64 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.96 Total: -43.57 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.80 Total: -78.83 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -2.13 Total: -31.18 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.89 0.86 -75.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037238338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.619 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds