Wall clock time and date at job start Mon Mar 30 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 N 1.46494 * 109.47483 * 120.00351 * 2 1 3 5 5 C 1.35996 * 125.65816 * 294.68958 * 4 2 1 6 6 C 1.35870 * 108.76142 * 180.02562 * 5 4 2 7 7 N 1.40735 * 126.11435 * 180.02562 * 6 5 4 8 8 C 1.40176 * 107.76909 * 359.97438 * 6 5 4 9 9 C 1.37589 * 125.66006 * 114.37822 * 4 2 1 10 10 C 1.46636 * 126.16929 * 359.97438 * 9 4 2 11 11 O 1.21696 * 120.00236 * 353.26799 * 10 9 4 12 12 N 1.34781 * 119.99972 * 173.25805 * 10 9 4 13 13 C 1.46504 * 119.99611 * 7.61777 * 12 10 9 14 14 C 1.46501 * 120.00027 * 187.61836 * 12 10 9 15 15 C 1.50702 * 109.47175 * 90.00119 * 14 12 10 16 16 H 1.07993 * 119.99815 * 359.97438 * 15 14 12 17 17 C 1.37874 * 119.99698 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00411 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99777 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47435 * 89.99793 * 19 17 15 21 21 H 1.48509 * 109.47200 * 209.99850 * 19 17 15 22 22 H 1.48499 * 109.46937 * 329.99496 * 19 17 15 23 23 H 1.09008 * 109.46555 * 299.99821 * 1 2 3 24 24 H 1.08999 * 109.47167 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47138 * 59.99582 * 1 2 3 26 26 H 1.09008 * 109.46555 * 240.00178 * 2 1 3 27 27 H 1.08998 * 109.47218 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46940 * 300.00239 * 3 2 1 29 29 H 1.09000 * 109.47100 * 59.99942 * 3 2 1 30 30 H 1.07996 * 125.61952 * 359.97438 * 5 4 2 31 31 H 0.97000 * 120.00166 * 359.97438 * 7 6 5 32 32 H 0.96996 * 119.99808 * 179.97438 * 7 6 5 33 33 H 1.07996 * 126.43754 * 180.02562 * 8 6 5 34 34 H 1.08993 * 109.47376 * 66.51323 * 13 12 10 35 35 H 1.09001 * 109.46624 * 186.51161 * 13 12 10 36 36 H 1.09000 * 109.47146 * 306.51208 * 13 12 10 37 37 H 1.09001 * 109.46716 * 209.99722 * 14 12 10 38 38 H 1.08993 * 109.47193 * 329.99962 * 14 12 10 39 39 H 0.96995 * 120.00324 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.8476 -0.2719 2.4786 6 6 2.4370 -1.1677 3.3130 7 7 2.4781 -1.0906 4.7176 8 6 2.9959 -2.1831 2.5246 9 6 2.7209 -1.8736 1.2085 10 6 3.1101 -2.6614 0.0346 11 8 2.7068 -2.3476 -1.0698 12 7 3.9148 -3.7330 0.1788 13 6 4.2653 -4.2108 1.5186 14 6 4.4389 -4.4199 -1.0043 15 6 5.7543 -3.8017 -1.4026 16 1 6.1592 -2.9791 -0.8318 17 6 6.4409 -4.2863 -2.4957 18 7 5.9481 -5.2883 -3.1904 19 14 8.0717 -3.5204 -2.9889 20 1 9.1793 -4.2238 -2.2936 21 1 8.2522 -3.6434 -4.4579 22 1 8.0800 -2.0852 -2.6077 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.3296 0.6253 2.7836 31 1 2.0593 -0.3446 5.1748 32 1 2.9251 -1.7834 5.2285 33 1 3.5361 -3.0478 2.8807 34 1 3.3732 -4.5968 2.0117 35 1 5.0083 -5.0044 1.4385 36 1 4.6754 -3.3868 2.1025 37 1 4.5880 -5.4751 -0.7754 38 1 3.7286 -4.3229 -1.8252 39 1 6.4309 -5.6290 -3.9596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036862275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:47 Heat of formation + Delta-G solvation = 31.098417 kcal Electronic energy + Delta-G solvation = -20626.668799 eV Core-core repulsion = 17570.917877 eV Total energy + Delta-G solvation = -3055.750921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12459 -38.32729 -35.88513 -34.66977 -33.19847 -32.58104 -29.53045 -27.96126 -27.27528 -27.13806 -26.05356 -23.36514 -21.89168 -20.79315 -19.89059 -18.38442 -16.63553 -16.49226 -16.25184 -15.27708 -15.06854 -14.82276 -14.56644 -14.34265 -14.13155 -13.87013 -13.39502 -12.73646 -12.58324 -12.38485 -12.29703 -12.20529 -12.06466 -11.85561 -11.36175 -11.28536 -10.98801 -10.92406 -10.71238 -10.37911 -10.25136 -10.08270 -9.62351 -8.92566 -8.42362 -7.99266 -7.64066 -6.90790 -6.03119 -4.08205 2.00073 3.03517 3.27211 3.31256 3.37592 3.42560 3.98038 4.12938 4.37355 4.47395 4.81852 5.06571 5.17384 5.29695 5.33311 5.33659 5.51131 5.62737 5.68841 5.70256 5.79898 5.95948 5.98865 6.05711 6.17202 6.19405 6.26873 6.34786 6.85251 7.07600 7.33275 7.46237 7.55714 7.62827 7.93520 7.93977 8.16359 8.24013 8.42739 8.90610 9.09663 9.56944 11.04655 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.005639 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.253876 B = 4964.314893 C = 5520.603163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 C -0.157 4.157 4 N -0.397 5.397 5 C -0.074 4.074 6 C 0.110 3.890 7 N -0.882 5.882 8 C -0.222 4.222 9 C -0.001 4.001 10 C 0.576 3.424 11 O -0.553 6.553 12 N -0.585 5.585 13 C 0.072 3.928 14 C 0.246 3.754 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.153 0.847 31 H 0.389 0.611 32 H 0.394 0.606 33 H 0.165 0.835 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 9.068 13.385 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.007 3.993 3 C -0.215 4.215 4 N -0.072 5.072 5 C -0.209 4.209 6 C 0.006 3.994 7 N -0.428 5.428 8 C -0.252 4.252 9 C -0.118 4.118 10 C 0.364 3.636 11 O -0.434 6.434 12 N -0.315 5.315 13 C -0.072 4.072 14 C 0.127 3.873 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.170 0.830 31 H 0.216 0.784 32 H 0.221 0.779 33 H 0.182 0.818 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.746 9.260 12.180 17.624 hybrid contribution 0.974 0.473 0.228 1.107 sum -7.772 9.734 12.408 17.582 Atomic orbital electron populations 1.22097 0.94044 1.02891 1.02196 1.21869 0.94978 0.93890 0.88517 1.22118 1.02247 0.94751 1.02364 1.43745 1.40641 1.17221 1.05640 1.20841 1.13871 1.03502 0.82731 1.16931 1.01787 0.96424 0.84274 1.41511 1.68634 1.30635 1.01978 1.21945 1.09636 1.02928 0.90687 1.20262 1.05379 0.91300 0.94879 1.16935 0.79353 0.80853 0.86429 1.90665 1.56218 1.69607 1.26911 1.47797 1.46349 1.28892 1.08503 1.22274 0.99986 1.00169 0.84764 1.19384 0.94330 0.91655 0.81966 1.21461 1.04882 1.17593 1.12704 0.92372 1.24926 0.98142 0.95038 0.95931 1.69933 1.38943 1.25526 1.18939 0.86496 0.83541 0.79700 0.77693 1.20587 1.21088 1.19920 0.92521 0.91862 0.90981 0.84922 0.91806 0.90874 0.92397 0.82975 0.78407 0.77914 0.81844 0.92998 0.90699 0.91100 0.94702 0.93494 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.31 37.16 0.35 -1.54 16 2 C 0.11 1.63 3.44 -67.93 -0.23 1.39 16 3 C -0.16 -1.91 9.16 37.16 0.34 -1.57 16 4 N -0.40 -6.47 2.64 -105.57 -0.28 -6.75 16 5 C -0.07 -1.04 10.38 -16.55 -0.17 -1.21 16 6 C 0.11 1.54 7.27 -83.89 -0.61 0.93 16 7 N -0.88 -9.00 9.19 32.30 0.30 -8.70 16 8 C -0.22 -3.53 8.86 -38.96 -0.34 -3.87 16 9 C 0.00 -0.02 6.82 -82.00 -0.56 -0.58 16 10 C 0.58 13.00 7.61 -12.87 -0.10 12.90 16 11 O -0.55 -14.10 13.94 5.19 0.07 -14.03 16 12 N -0.59 -13.07 2.86 -184.53 -0.53 -13.59 16 13 C 0.07 1.21 8.61 59.85 0.52 1.73 16 14 C 0.25 6.53 5.17 -5.19 -0.03 6.51 16 15 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 23 H 0.06 0.60 8.02 -51.92 -0.42 0.19 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.13 2.45 5.41 -51.92 -0.28 2.16 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 30 H 0.15 1.72 7.91 -52.49 -0.41 1.30 16 31 H 0.39 3.15 8.96 -40.82 -0.37 2.79 16 32 H 0.39 3.41 8.96 -40.82 -0.37 3.05 16 33 H 0.16 2.29 4.10 -52.49 -0.22 2.08 16 34 H 0.05 0.75 7.33 -51.93 -0.38 0.37 16 35 H 0.07 1.24 7.85 -51.93 -0.41 0.83 16 36 H 0.07 1.10 5.51 -51.93 -0.29 0.82 16 37 H 0.04 0.93 7.98 -51.93 -0.41 0.51 16 38 H 0.05 1.40 7.33 -51.93 -0.38 1.01 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -33.44 319.97 -6.73 -40.16 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.56 Total: 6.12 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.26 Total: 0.92 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.23 Total: -54.95 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.44 -6.73 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036862275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.260 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds