Wall clock time and date at job start Mon Mar 30 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 O 1.42897 * 109.47120 * 120.00051 * 2 1 3 5 5 C 1.35781 * 117.00017 * 90.00301 * 4 2 1 6 6 N 1.32276 * 119.67568 * 359.97400 * 5 4 2 7 7 C 1.32464 * 121.62989 * 179.97438 * 6 5 4 8 8 N 1.39315 * 119.60413 * 180.02562 * 7 6 5 9 9 C 1.46495 * 119.99901 * 5.00593 * 8 7 6 10 10 C 1.46504 * 119.99669 * 185.00270 * 8 7 6 11 11 C 1.50697 * 109.46849 * 90.00460 * 10 8 7 12 12 H 1.07999 * 120.00489 * 359.97438 * 11 10 8 13 13 C 1.37884 * 120.00162 * 179.97438 * 11 10 8 14 14 N 1.31509 * 120.00439 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99442 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47159 * 90.00194 * 15 13 11 17 17 H 1.48501 * 109.47106 * 209.99847 * 15 13 11 18 18 H 1.48498 * 109.47611 * 330.00195 * 15 13 11 19 19 C 1.38896 * 120.79144 * 359.74993 * 7 6 5 20 20 C 1.38549 * 119.27484 * 0.52781 * 19 7 6 21 21 C 1.39062 * 118.50138 * 359.47693 * 20 19 7 22 22 N 1.40328 * 120.42367 * 180.27315 * 21 20 19 23 23 H 1.09002 * 109.47085 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47299 * 299.99709 * 1 2 3 25 25 H 1.09005 * 109.46953 * 60.00153 * 1 2 3 26 26 H 1.09005 * 109.46899 * 240.00533 * 2 1 3 27 27 H 1.08996 * 109.47241 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46921 * 300.00184 * 3 2 1 29 29 H 1.09002 * 109.47179 * 60.00085 * 3 2 1 30 30 H 1.09002 * 109.46972 * 90.00305 * 9 8 7 31 31 H 1.09003 * 109.46948 * 210.00129 * 9 8 7 32 32 H 1.09000 * 109.47428 * 329.99665 * 9 8 7 33 33 H 1.09005 * 109.46790 * 209.99668 * 10 8 7 34 34 H 1.09001 * 109.47227 * 330.00162 * 10 8 7 35 35 H 0.96999 * 120.00075 * 180.02562 * 14 13 11 36 36 H 1.07995 * 120.36019 * 180.28064 * 19 7 6 37 37 H 1.08002 * 120.75114 * 179.76129 * 20 19 7 38 38 H 0.97008 * 119.99907 * 0.02562 * 22 21 20 39 39 H 0.96996 * 120.00185 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2119 -2.0119 1.0651 6 7 1.9692 -2.6266 -0.0807 7 6 2.1567 -3.9302 -0.2231 8 7 1.8880 -4.5343 -1.4493 9 6 1.5069 -3.7143 -2.6019 10 6 1.9867 -5.9896 -1.5862 11 6 0.6524 -6.6153 -1.2710 12 1 -0.1851 -5.9914 -0.9959 13 6 0.5009 -7.9843 -1.3339 14 7 -0.6636 -8.5304 -1.0594 15 14 1.9494 -9.0633 -1.8105 16 1 2.7001 -9.4518 -0.5896 17 1 1.4532 -10.2838 -2.4957 18 1 2.8464 -8.3123 -2.7251 19 6 2.6232 -4.7010 0.8340 20 6 2.8832 -4.0942 2.0520 21 6 2.6762 -2.7240 2.1683 22 7 2.9320 -2.0671 3.3817 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.4019 -3.4193 -3.1497 31 1 0.8531 -4.2900 -3.2571 32 1 0.9822 -2.8235 -2.2566 33 1 2.2730 -6.2398 -2.6077 34 1 2.7386 -6.3694 -0.8945 35 1 -0.7700 -9.4935 -1.1033 36 1 2.7779 -5.7625 0.7089 37 1 3.2430 -4.6714 2.8910 38 1 3.2558 -2.5691 4.1461 39 1 2.7851 -1.1113 3.4562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037066583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:26 Heat of formation + Delta-G solvation = 10.566444 kcal Electronic energy + Delta-G solvation = -20465.971650 eV Core-core repulsion = 17409.330395 eV Total energy + Delta-G solvation = -3056.641255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18165 -38.08630 -36.06267 -33.88902 -32.87979 -32.40445 -30.85676 -28.38784 -27.82453 -27.17976 -24.94533 -22.94767 -22.71673 -20.78118 -20.40242 -17.81596 -17.07967 -16.92581 -16.20579 -15.61389 -15.31602 -14.74952 -14.59297 -14.18918 -13.94402 -13.49153 -13.13261 -12.95445 -12.61399 -12.38901 -12.27307 -12.17268 -12.04708 -11.73809 -11.58777 -11.32889 -10.96858 -10.77125 -10.73418 -10.57946 -10.47660 -10.13213 -9.52492 -9.02903 -8.69058 -8.63927 -7.97242 -6.14098 -6.06332 -4.13267 1.92459 2.22672 3.22567 3.30433 3.31186 3.36366 3.86577 4.33175 4.37667 4.55595 4.95021 5.09145 5.12161 5.21136 5.33196 5.44340 5.57856 5.69994 5.74050 5.79089 5.89210 6.04458 6.06591 6.15984 6.18479 6.33201 6.45429 6.51660 6.57175 6.75263 6.80417 6.96008 7.51801 7.53595 7.75039 7.97189 8.20195 8.36922 8.45428 8.79812 8.96252 9.46583 10.99870 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.005386 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.679619 B = 5197.374857 C = 5783.368871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.086 3.914 3 C -0.148 4.148 4 O -0.311 6.311 5 C 0.297 3.703 6 N -0.570 5.570 7 C 0.412 3.588 8 N -0.594 5.594 9 C 0.108 3.892 10 C 0.226 3.774 11 C -0.534 4.534 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.217 4.217 20 C -0.083 4.083 21 C 0.074 3.926 22 N -0.883 5.883 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.390 0.610 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 14.769 3.718 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 C -0.205 4.205 4 O -0.220 6.220 5 C 0.114 3.886 6 N -0.302 5.302 7 C 0.176 3.824 8 N -0.306 5.306 9 C -0.036 4.036 10 C 0.105 3.895 11 C -0.573 4.573 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.533 5.533 15 Si 0.698 3.302 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.189 1.189 19 C -0.243 4.243 20 C -0.113 4.113 21 C -0.030 4.030 22 N -0.429 5.429 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.217 0.783 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.897 15.107 2.944 16.866 hybrid contribution 0.728 -1.125 0.562 1.453 sum 7.625 13.982 3.505 16.307 Atomic orbital electron populations 1.22193 0.95397 1.03081 1.01757 1.22135 0.94006 0.92105 0.88771 1.21888 1.01661 0.94562 1.02430 1.86148 1.81343 1.16452 1.38040 1.18674 0.97266 0.83915 0.88742 1.66413 1.27716 1.11454 1.24631 1.17718 0.91395 0.86183 0.87059 1.46470 1.71481 1.06778 1.05890 1.21339 0.98527 0.95479 0.88217 1.19689 0.97703 0.75202 0.96943 1.21487 0.96249 0.92354 1.47226 0.90553 1.24888 0.95638 0.97774 0.94656 1.69900 1.23304 1.11401 1.48705 0.86919 0.83161 0.80660 0.79411 1.19890 1.20985 1.18923 1.21230 1.08760 1.01648 0.92652 1.20578 1.01543 0.91335 0.97848 1.17349 1.07266 0.91581 0.86817 1.41934 1.79912 1.10603 1.10446 0.91689 0.92541 0.91676 0.89484 0.92156 0.90964 0.92054 0.95018 0.91815 0.91735 0.95045 0.95372 0.92512 0.84296 0.85208 0.78281 0.77717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.53 37.16 0.35 -1.79 16 2 C 0.09 1.16 3.11 -26.73 -0.08 1.08 16 3 C -0.15 -1.50 9.56 37.16 0.36 -1.15 16 4 O -0.31 -4.86 9.02 -19.06 -0.17 -5.03 16 5 C 0.30 5.30 7.47 -16.98 -0.13 5.17 16 6 N -0.57 -11.05 7.36 -12.32 -0.09 -11.15 16 7 C 0.41 8.62 7.37 -154.75 -1.14 7.48 16 8 N -0.59 -12.80 2.98 -183.06 -0.55 -13.34 16 9 C 0.11 2.00 10.50 59.84 0.63 2.63 16 10 C 0.23 5.28 4.08 -5.19 -0.02 5.26 16 11 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 12 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 15 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 19 C -0.22 -4.30 9.27 -39.22 -0.36 -4.66 16 20 C -0.08 -1.40 10.03 -39.16 -0.39 -1.80 16 21 C 0.07 1.23 6.81 -83.28 -0.57 0.66 16 22 N -0.88 -11.20 9.11 32.64 0.30 -10.90 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.30 6.98 -51.93 -0.36 0.94 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.06 1.16 7.30 -51.93 -0.38 0.78 16 33 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.03 0.64 5.39 -51.93 -0.28 0.36 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.14 2.82 6.00 -52.49 -0.32 2.50 16 37 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.39 4.00 8.86 -40.82 -0.36 3.64 16 39 H 0.40 4.65 8.21 -40.82 -0.34 4.32 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -30.86 323.17 -7.13 -37.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.79 Total: 8.21 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.80 Total: -0.30 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.43 Total: -61.48 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.17 Total: -5.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.86 -7.13 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037066583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.556 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds