Wall clock time and date at job start Mon Mar 30 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 O 1.42897 * 109.47120 * 120.00051 * 2 1 3 5 5 C 1.35781 * 117.00017 * 90.00301 * 4 2 1 6 6 N 1.32276 * 119.67568 * 359.97400 * 5 4 2 7 7 C 1.32464 * 121.62989 * 179.97438 * 6 5 4 8 8 N 1.39315 * 119.60413 * 180.02562 * 7 6 5 9 9 C 1.46495 * 119.99901 * 5.00593 * 8 7 6 10 10 C 1.46504 * 119.99669 * 185.00270 * 8 7 6 11 11 C 1.50697 * 109.46849 * 90.00460 * 10 8 7 12 12 H 1.07999 * 120.00489 * 359.97438 * 11 10 8 13 13 C 1.37884 * 120.00162 * 179.97438 * 11 10 8 14 14 N 1.31509 * 120.00439 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99442 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47159 * 90.00194 * 15 13 11 17 17 H 1.48501 * 109.47106 * 209.99847 * 15 13 11 18 18 H 1.48498 * 109.47611 * 330.00195 * 15 13 11 19 19 C 1.38896 * 120.79144 * 359.74993 * 7 6 5 20 20 C 1.38549 * 119.27484 * 0.52781 * 19 7 6 21 21 C 1.39062 * 118.50138 * 359.47693 * 20 19 7 22 22 N 1.40328 * 120.42367 * 180.27315 * 21 20 19 23 23 H 1.09002 * 109.47085 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47299 * 299.99709 * 1 2 3 25 25 H 1.09005 * 109.46953 * 60.00153 * 1 2 3 26 26 H 1.09005 * 109.46899 * 240.00533 * 2 1 3 27 27 H 1.08996 * 109.47241 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46921 * 300.00184 * 3 2 1 29 29 H 1.09002 * 109.47179 * 60.00085 * 3 2 1 30 30 H 1.09002 * 109.46972 * 90.00305 * 9 8 7 31 31 H 1.09003 * 109.46948 * 210.00129 * 9 8 7 32 32 H 1.09000 * 109.47428 * 329.99665 * 9 8 7 33 33 H 1.09005 * 109.46790 * 209.99668 * 10 8 7 34 34 H 1.09001 * 109.47227 * 330.00162 * 10 8 7 35 35 H 0.96999 * 120.00075 * 180.02562 * 14 13 11 36 36 H 1.07995 * 120.36019 * 180.28064 * 19 7 6 37 37 H 1.08002 * 120.75114 * 179.76129 * 20 19 7 38 38 H 0.97008 * 119.99907 * 0.02562 * 22 21 20 39 39 H 0.96996 * 120.00185 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2119 -2.0119 1.0651 6 7 1.9692 -2.6266 -0.0807 7 6 2.1567 -3.9302 -0.2231 8 7 1.8880 -4.5343 -1.4493 9 6 1.5069 -3.7143 -2.6019 10 6 1.9867 -5.9896 -1.5862 11 6 0.6524 -6.6153 -1.2710 12 1 -0.1851 -5.9914 -0.9959 13 6 0.5009 -7.9843 -1.3339 14 7 -0.6636 -8.5304 -1.0594 15 14 1.9494 -9.0633 -1.8105 16 1 2.7001 -9.4518 -0.5896 17 1 1.4532 -10.2838 -2.4957 18 1 2.8464 -8.3123 -2.7251 19 6 2.6232 -4.7010 0.8340 20 6 2.8832 -4.0942 2.0520 21 6 2.6762 -2.7240 2.1683 22 7 2.9320 -2.0671 3.3817 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.4019 -3.4193 -3.1497 31 1 0.8531 -4.2900 -3.2571 32 1 0.9822 -2.8235 -2.2566 33 1 2.2730 -6.2398 -2.6077 34 1 2.7386 -6.3694 -0.8945 35 1 -0.7700 -9.4935 -1.1033 36 1 2.7779 -5.7625 0.7089 37 1 3.2430 -4.6714 2.8910 38 1 3.2558 -2.5691 4.1461 39 1 2.7851 -1.1113 3.4562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037066583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:26 Heat of formation + Delta-G solvation = -10.728622 kcal Electronic energy + Delta-G solvation = -20466.895073 eV Core-core repulsion = 17409.330395 eV Total energy + Delta-G solvation = -3057.564678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54602 -39.40609 -37.52696 -35.38429 -34.39785 -33.95289 -32.23890 -30.26595 -29.19947 -28.11746 -26.51841 -24.49161 -24.26320 -22.05630 -21.86039 -19.16665 -19.04880 -18.37902 -17.50326 -17.08680 -16.59763 -16.37041 -15.98128 -15.71459 -15.30544 -14.77593 -14.68764 -14.31490 -14.21727 -13.85807 -13.57281 -13.26055 -13.16747 -13.12796 -13.09233 -12.80820 -12.55622 -12.32404 -12.25048 -11.93126 -11.80876 -11.64581 -11.61281 -10.79115 -10.45203 -10.05889 -9.44669 -8.29068 -7.48777 -6.35225 0.50850 0.79172 1.39904 1.41104 1.51855 2.11041 2.35307 2.38720 3.04861 3.10906 3.20037 3.73714 3.99978 4.10457 4.16244 4.24749 4.34753 4.45616 4.60154 4.68896 4.71560 4.83680 4.86624 4.87723 4.91790 4.98983 5.02342 5.11999 5.24968 5.30238 5.31258 5.48301 5.54169 6.03176 6.26252 6.43447 6.66313 6.70519 6.88051 7.20949 7.24973 7.37755 8.88430 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.005386 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.679619 B = 5197.374857 C = 5783.368871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 C -0.139 4.139 4 O -0.309 6.309 5 C 0.282 3.718 6 N -0.573 5.573 7 C 0.381 3.619 8 N -0.611 5.611 9 C 0.112 3.888 10 C 0.237 3.763 11 C -0.537 4.537 12 H 0.020 0.980 13 C 0.013 3.987 14 N -0.948 5.948 15 Si 0.948 3.052 16 H -0.261 1.261 17 H -0.283 1.283 18 H -0.240 1.240 19 C -0.237 4.237 20 C -0.083 4.083 21 C 0.084 3.916 22 N -0.866 5.866 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.162 0.838 38 H 0.405 0.595 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 16.004 4.328 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 C -0.196 4.196 4 O -0.218 6.218 5 C 0.098 3.902 6 N -0.305 5.305 7 C 0.147 3.853 8 N -0.325 5.325 9 C -0.031 4.031 10 C 0.115 3.885 11 C -0.576 4.576 12 H 0.039 0.961 13 C -0.185 4.185 14 N -0.588 5.588 15 Si 0.770 3.230 16 H -0.186 1.186 17 H -0.209 1.209 18 H -0.164 1.164 19 C -0.263 4.263 20 C -0.113 4.113 21 C -0.022 4.022 22 N -0.412 5.412 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.235 0.765 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.107 16.409 3.595 19.109 hybrid contribution -0.051 -1.313 0.502 1.406 sum 9.056 15.097 4.097 18.075 Atomic orbital electron populations 1.22154 0.95116 1.01215 1.03380 1.22389 0.94319 0.93677 0.87363 1.21863 1.01713 0.92046 1.04001 1.86156 1.81279 1.15283 1.39062 1.19023 0.97452 0.84871 0.88829 1.66376 1.27539 1.10945 1.25680 1.17923 0.93068 0.87003 0.87281 1.46428 1.72819 1.06200 1.07020 1.21367 0.99325 0.94880 0.87569 1.19427 0.95197 0.76475 0.97419 1.21645 0.96758 0.92290 1.46918 0.96122 1.25872 0.98909 0.99326 0.94346 1.70073 1.26217 1.11967 1.50552 0.85712 0.79215 0.78192 0.79860 1.18576 1.20893 1.16363 1.21295 1.09986 1.01251 0.93768 1.20860 1.00959 0.91743 0.97755 1.17510 1.05426 0.91614 0.87684 1.41887 1.78724 1.11074 1.09544 0.95188 0.91483 0.89508 0.91280 0.92031 0.88825 0.91031 0.92802 0.92612 0.91909 0.94005 0.94259 0.92331 0.85361 0.82045 0.76474 0.76838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.53 71.98 0.69 -3.33 16 2 C 0.08 2.03 3.11 30.60 0.10 2.12 16 3 C -0.14 -2.46 9.56 71.98 0.69 -1.77 16 4 O -0.31 -9.26 9.02 -91.10 -0.82 -10.08 16 5 C 0.28 9.86 7.47 84.87 0.63 10.49 16 6 N -0.57 -22.45 7.36 -305.68 -2.25 -24.70 16 7 C 0.38 16.21 7.37 132.88 0.98 17.19 16 8 N -0.61 -26.83 2.98 -733.07 -2.19 -29.01 16 9 C 0.11 4.21 10.50 127.77 1.34 5.55 16 10 C 0.24 11.14 4.08 85.63 0.35 11.49 16 11 C -0.54 -30.81 9.94 25.60 0.25 -30.56 16 12 H 0.02 1.37 8.06 -2.91 -0.02 1.35 16 13 C 0.01 0.76 5.47 84.66 0.46 1.23 16 14 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 15 Si 0.95 41.95 27.47 68.60 1.88 43.83 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 19 C -0.24 -9.42 9.27 22.50 0.21 -9.22 16 20 C -0.08 -2.69 10.03 22.54 0.23 -2.47 16 21 C 0.08 2.62 6.81 38.23 0.26 2.88 16 22 N -0.87 -19.51 9.11 -50.65 -0.46 -19.97 16 23 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.07 2.04 6.98 -2.38 -0.02 2.02 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 32 H 0.06 2.33 7.30 -2.39 -0.02 2.31 16 33 H 0.04 1.87 7.13 -2.38 -0.02 1.86 16 34 H 0.04 1.77 5.39 -2.39 -0.01 1.76 16 35 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 36 H 0.13 5.26 6.00 -2.91 -0.02 5.24 16 37 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.41 6.95 8.86 -92.70 -0.82 6.12 16 39 H 0.40 8.30 8.21 -92.71 -0.76 7.54 16 Total: -1.00 -69.67 323.17 2.08 -67.59 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.57 Total: 27.30 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.19 Total: 3.61 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -4.60 Total: -132.25 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.82 Total: -10.08 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.83 kcal Total: -69.67 2.08 -67.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037066583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.861 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds