Wall clock time and date at job start Mon Mar 30 2020 04:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47234 * 333.23234 * 3 2 1 5 5 N 1.46501 * 109.47211 * 182.63190 * 4 3 2 6 6 C 1.46497 * 119.99964 * 269.80211 * 5 4 3 7 7 C 1.50704 * 109.47598 * 273.53655 * 6 5 4 8 8 H 1.07997 * 119.99393 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99621 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47345 * 89.99596 * 11 9 7 13 13 H 1.48494 * 109.47319 * 209.99958 * 11 9 7 14 14 H 1.48502 * 109.46899 * 329.99499 * 11 9 7 15 15 C 1.34769 * 119.99977 * 89.80796 * 5 4 3 16 16 O 1.21282 * 120.00200 * 5.16365 * 15 5 4 17 17 C 1.50696 * 120.00094 * 184.89120 * 15 5 4 18 18 H 1.08994 * 109.50596 * 33.42418 * 17 15 5 19 19 C 1.53118 * 109.50822 * 153.50416 * 17 15 5 20 20 C 1.53112 * 109.16493 * 177.59375 * 19 17 15 21 21 C 1.53031 * 109.28089 * 302.34380 * 20 19 17 22 22 N 1.46850 * 109.52153 * 59.17979 * 21 20 19 23 23 C 1.46843 * 111.19704 * 298.25619 * 22 21 20 24 24 H 1.09004 * 109.47210 * 213.23723 * 3 2 1 25 25 H 1.09003 * 109.47316 * 93.23461 * 3 2 1 26 26 H 1.09005 * 109.46963 * 62.63465 * 4 3 2 27 27 H 1.09000 * 109.47504 * 302.63741 * 4 3 2 28 28 H 1.09003 * 109.47172 * 33.53871 * 6 5 4 29 29 H 1.08998 * 109.47162 * 153.53437 * 6 5 4 30 30 H 0.97003 * 119.99909 * 180.02562 * 10 9 7 31 31 H 1.09004 * 109.51998 * 297.50229 * 19 17 15 32 32 H 1.09001 * 109.52252 * 57.62546 * 19 17 15 33 33 H 1.09005 * 109.50464 * 62.28628 * 20 19 17 34 34 H 1.09005 * 109.50402 * 182.36194 * 20 19 17 35 35 H 1.09004 * 109.46546 * 179.19268 * 21 20 19 36 36 H 1.08997 * 109.46468 * 299.16304 * 21 20 19 37 37 H 1.00900 * 111.00010 * 174.16125 * 22 21 20 38 38 H 1.09000 * 109.46374 * 301.72734 * 23 22 21 39 39 H 1.09004 * 109.46727 * 181.75881 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2870 0.6497 5 7 4.5822 -1.2582 0.7065 6 6 5.3692 -1.8012 -0.4035 7 6 5.5660 -3.2818 -0.2028 8 1 5.1472 -3.7694 0.6650 9 6 6.2817 -4.0136 -1.1265 10 7 6.7922 -3.4196 -2.1830 11 14 6.5250 -5.8489 -0.8782 12 1 5.4112 -6.5880 -1.5250 13 1 7.8142 -6.2642 -1.4871 14 1 6.5432 -6.1535 0.5751 15 6 5.2047 -0.7323 1.7799 16 8 4.5570 -0.3687 2.7387 17 6 6.7059 -0.6018 1.7915 18 1 7.0613 -0.3975 0.7815 19 6 7.1122 0.5472 2.7184 20 6 8.6399 0.6343 2.7712 21 6 9.2061 -0.7042 3.2505 22 7 8.7902 -1.7705 2.3305 23 6 7.3283 -1.9046 2.2992 24 1 2.9710 0.8604 0.5633 25 1 2.9714 0.0588 -1.0260 26 1 2.7947 -2.1447 0.0599 27 1 2.7173 -1.3683 1.6598 28 1 4.8416 -1.6286 -1.3415 29 1 6.3401 -1.3068 -0.4365 30 1 7.2954 -3.9345 -2.8331 31 1 6.7068 1.4842 2.3363 32 1 6.7221 0.3630 3.7194 33 1 9.0263 0.8577 1.7767 34 1 8.9357 1.4237 3.4623 35 1 10.2945 -0.6501 3.2755 36 1 8.8303 -0.9203 4.2506 37 1 9.2286 -2.6469 2.5710 38 1 6.9612 -2.1151 3.3037 39 1 7.0526 -2.7224 1.6333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:38 Heat of formation + Delta-G solvation = -21.292574 kcal Electronic energy + Delta-G solvation = -20706.283303 eV Core-core repulsion = 17648.260538 eV Total energy + Delta-G solvation = -3058.022765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79310 -37.56267 -36.56802 -35.21790 -32.94044 -31.91397 -31.39764 -30.14717 -27.23223 -24.76806 -23.41110 -23.06557 -22.42951 -19.70346 -18.30093 -17.44529 -16.68416 -16.48716 -16.08736 -15.19615 -14.68046 -14.61774 -14.37673 -14.16333 -13.59578 -13.45598 -13.25458 -12.91126 -12.66493 -12.40614 -12.31180 -12.19651 -11.93745 -11.64088 -11.51366 -11.08547 -11.01984 -10.86193 -10.66972 -10.56741 -10.29939 -10.13970 -9.97436 -9.78561 -9.06737 -8.57087 -8.11991 -7.89678 -6.22677 -4.29084 2.84612 2.94896 3.20170 3.23690 3.28659 3.32329 3.68253 4.28769 4.35679 4.59286 5.06559 5.10034 5.16846 5.23124 5.26048 5.35390 5.50403 5.60148 5.67268 5.71885 5.83257 5.98896 6.04122 6.14130 6.15130 6.25356 6.27360 6.30441 6.57502 6.71291 6.72889 7.15806 7.34911 7.42356 7.68746 7.70617 7.70987 7.99575 8.20466 8.72381 8.89750 9.37968 10.84145 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.009085 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.663521 B = 3081.292860 C = 5220.540619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.222 3.778 3 C -0.045 4.045 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.232 3.768 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.071 3.929 10 N -0.885 5.885 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.522 3.478 16 O -0.571 6.571 17 C -0.096 4.096 18 H 0.105 0.895 19 C -0.104 4.104 20 C -0.116 4.116 21 C 0.056 3.944 22 N -0.683 5.683 23 C 0.065 3.935 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.343 0.657 38 H 0.023 0.977 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 5.501 5.589 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.096 4.096 3 C -0.086 4.086 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.113 3.887 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.133 4.133 10 N -0.522 5.522 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.311 3.689 16 O -0.451 6.451 17 C -0.118 4.118 18 H 0.123 0.877 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.074 4.074 22 N -0.314 5.314 23 C -0.064 4.064 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.161 0.839 38 H 0.041 0.959 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.041 6.047 5.334 8.317 hybrid contribution 0.504 -1.547 0.723 1.781 sum 2.546 4.499 6.057 7.963 Atomic orbital electron populations 1.81172 1.13092 1.09036 1.09568 1.29124 0.95142 0.92815 0.92544 1.19786 0.81296 1.02430 1.05128 1.21102 0.81982 0.95259 1.01811 1.48239 1.05326 1.58087 1.20744 1.19597 0.91483 0.94071 0.83541 1.21388 1.34907 0.93006 1.08473 0.92087 1.24883 0.95082 0.98520 0.94864 1.69899 1.34841 1.36261 1.11205 0.86577 0.77680 0.85187 0.78502 1.20650 1.21032 1.19834 1.20539 0.90109 0.76442 0.81860 1.90594 1.67914 1.51797 1.34843 1.21238 0.91465 0.96699 1.02382 0.87667 1.21444 0.95162 0.97533 1.00066 1.21573 0.95569 0.96275 1.01933 1.21929 0.99399 0.92632 0.93429 1.60180 1.08202 1.09416 1.53599 1.21974 0.86519 0.98094 0.99825 0.87507 0.86962 0.89239 0.90124 0.94605 0.93308 0.92452 0.92031 0.91514 0.91067 0.91914 0.91295 0.95743 0.83941 0.95906 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.56 18.54 42.15 0.78 -6.78 16 2 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 3 C -0.04 -0.58 6.03 -29.52 -0.18 -0.76 16 4 C 0.12 1.97 5.42 -4.04 -0.02 1.94 16 5 N -0.59 -10.82 2.46 -175.06 -0.43 -11.25 16 6 C 0.23 4.84 4.95 -5.19 -0.03 4.81 16 7 C -0.54 -12.65 7.44 -34.44 -0.26 -12.90 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.88 -22.80 13.29 55.43 0.74 -22.06 16 11 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 15 C 0.52 9.72 6.76 -10.99 -0.07 9.64 16 16 O -0.57 -11.67 15.63 5.56 0.09 -11.58 16 17 C -0.10 -1.64 1.95 -91.69 -0.18 -1.82 16 18 H 0.11 1.88 6.11 -51.93 -0.32 1.57 16 19 C -0.10 -1.54 4.88 -26.61 -0.13 -1.67 16 20 C -0.12 -1.46 6.09 -26.66 -0.16 -1.62 16 21 C 0.06 0.71 6.55 -3.83 -0.03 0.69 16 22 N -0.68 -10.32 6.85 -113.81 -0.78 -11.10 16 23 C 0.07 1.12 5.79 -3.83 -0.02 1.10 16 24 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.09 1.42 8.07 -51.93 -0.42 1.01 16 27 H 0.08 1.33 7.36 -51.93 -0.38 0.95 16 28 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.05 1.07 5.66 -51.93 -0.29 0.77 16 30 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 4.65 8.90 -39.29 -0.35 4.30 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 2.26 5.89 -51.93 -0.31 1.95 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -27.54 323.50 -7.06 -34.60 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.82 Total: 4.89 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.49 Total: 3.93 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.31 Total: -51.19 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.54 -7.06 -34.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.312 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds