Wall clock time and date at job start Mon Mar 30 2020 04:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47234 * 333.23234 * 3 2 1 5 5 N 1.46501 * 109.47211 * 182.63190 * 4 3 2 6 6 C 1.46497 * 119.99964 * 269.80211 * 5 4 3 7 7 C 1.50704 * 109.47598 * 273.53655 * 6 5 4 8 8 H 1.07997 * 119.99393 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99621 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47345 * 89.99596 * 11 9 7 13 13 H 1.48494 * 109.47319 * 209.99958 * 11 9 7 14 14 H 1.48502 * 109.46899 * 329.99499 * 11 9 7 15 15 C 1.34769 * 119.99977 * 89.80796 * 5 4 3 16 16 O 1.21282 * 120.00200 * 5.16365 * 15 5 4 17 17 C 1.50696 * 120.00094 * 184.89120 * 15 5 4 18 18 H 1.08994 * 109.50596 * 33.42418 * 17 15 5 19 19 C 1.53118 * 109.50822 * 153.50416 * 17 15 5 20 20 C 1.53112 * 109.16493 * 177.59375 * 19 17 15 21 21 C 1.53031 * 109.28089 * 302.34380 * 20 19 17 22 22 N 1.46850 * 109.52153 * 59.17979 * 21 20 19 23 23 C 1.46843 * 111.19704 * 298.25619 * 22 21 20 24 24 H 1.09004 * 109.47210 * 213.23723 * 3 2 1 25 25 H 1.09003 * 109.47316 * 93.23461 * 3 2 1 26 26 H 1.09005 * 109.46963 * 62.63465 * 4 3 2 27 27 H 1.09000 * 109.47504 * 302.63741 * 4 3 2 28 28 H 1.09003 * 109.47172 * 33.53871 * 6 5 4 29 29 H 1.08998 * 109.47162 * 153.53437 * 6 5 4 30 30 H 0.97003 * 119.99909 * 180.02562 * 10 9 7 31 31 H 1.09004 * 109.51998 * 297.50229 * 19 17 15 32 32 H 1.09001 * 109.52252 * 57.62546 * 19 17 15 33 33 H 1.09005 * 109.50464 * 62.28628 * 20 19 17 34 34 H 1.09005 * 109.50402 * 182.36194 * 20 19 17 35 35 H 1.09004 * 109.46546 * 179.19268 * 21 20 19 36 36 H 1.08997 * 109.46468 * 299.16304 * 21 20 19 37 37 H 1.00900 * 111.00010 * 174.16125 * 22 21 20 38 38 H 1.09000 * 109.46374 * 301.72734 * 23 22 21 39 39 H 1.09004 * 109.46727 * 181.75881 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2870 0.6497 5 7 4.5822 -1.2582 0.7065 6 6 5.3692 -1.8012 -0.4035 7 6 5.5660 -3.2818 -0.2028 8 1 5.1472 -3.7694 0.6650 9 6 6.2817 -4.0136 -1.1265 10 7 6.7922 -3.4196 -2.1830 11 14 6.5250 -5.8489 -0.8782 12 1 5.4112 -6.5880 -1.5250 13 1 7.8142 -6.2642 -1.4871 14 1 6.5432 -6.1535 0.5751 15 6 5.2047 -0.7323 1.7799 16 8 4.5570 -0.3687 2.7387 17 6 6.7059 -0.6018 1.7915 18 1 7.0613 -0.3975 0.7815 19 6 7.1122 0.5472 2.7184 20 6 8.6399 0.6343 2.7712 21 6 9.2061 -0.7042 3.2505 22 7 8.7902 -1.7705 2.3305 23 6 7.3283 -1.9046 2.2992 24 1 2.9710 0.8604 0.5633 25 1 2.9714 0.0588 -1.0260 26 1 2.7947 -2.1447 0.0599 27 1 2.7173 -1.3683 1.6598 28 1 4.8416 -1.6286 -1.3415 29 1 6.3401 -1.3068 -0.4365 30 1 7.2954 -3.9345 -2.8331 31 1 6.7068 1.4842 2.3363 32 1 6.7221 0.3630 3.7194 33 1 9.0263 0.8577 1.7767 34 1 8.9357 1.4237 3.4623 35 1 10.2945 -0.6501 3.2755 36 1 8.8303 -0.9203 4.2506 37 1 9.2286 -2.6469 2.5710 38 1 6.9612 -2.1151 3.3037 39 1 7.0526 -2.7224 1.6333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:37 Heat of formation + Delta-G solvation = -38.164430 kcal Electronic energy + Delta-G solvation = -20707.014922 eV Core-core repulsion = 17648.260538 eV Total energy + Delta-G solvation = -3058.754384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23365 -38.80542 -37.84608 -36.75549 -34.66534 -33.24752 -32.65060 -31.39617 -28.97665 -26.04643 -24.96104 -24.47829 -23.70340 -20.90715 -19.76543 -18.73279 -18.25878 -18.07720 -17.45352 -16.62336 -16.24658 -15.95203 -15.72682 -15.36167 -14.91772 -14.70161 -14.58228 -14.31957 -14.10753 -13.79055 -13.61748 -13.56832 -13.30610 -13.09056 -12.96484 -12.69677 -12.61269 -12.28443 -12.05761 -11.80074 -11.68987 -11.62236 -11.45270 -11.22511 -10.62014 -10.38883 -9.47866 -9.31276 -8.11096 -6.20971 1.45055 1.49665 1.55697 1.59722 1.77234 1.79813 2.29026 2.49086 3.15148 3.21585 3.39145 3.82072 3.95493 4.01046 4.12024 4.15077 4.29521 4.40846 4.46077 4.54764 4.72648 4.80698 4.86456 4.94402 4.95956 5.03326 5.06139 5.12094 5.16956 5.31914 5.43256 5.52243 5.74452 5.89665 6.15568 6.17002 6.53572 6.56075 6.61538 6.90249 7.34962 7.50060 8.94466 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.009085 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.663521 B = 3081.292860 C = 5220.540619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.030 4.030 4 C 0.121 3.879 5 N -0.593 5.593 6 C 0.248 3.752 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.032 3.968 10 N -0.912 5.912 11 Si 0.942 3.058 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.521 3.479 16 O -0.589 6.589 17 C -0.094 4.094 18 H 0.096 0.904 19 C -0.099 4.099 20 C -0.112 4.112 21 C 0.054 3.946 22 N -0.691 5.691 23 C 0.074 3.926 24 H 0.120 0.880 25 H 0.133 0.867 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.350 0.650 38 H 0.016 0.984 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 6.124 6.096 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.071 4.071 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.127 3.873 7 C -0.574 4.574 8 H 0.069 0.931 9 C -0.169 4.169 10 N -0.551 5.551 11 Si 0.769 3.231 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.310 3.690 16 O -0.471 6.471 17 C -0.116 4.116 18 H 0.114 0.886 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.075 4.075 22 N -0.323 5.323 23 C -0.056 4.056 24 H 0.138 0.862 25 H 0.150 0.850 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.169 0.831 38 H 0.035 0.965 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.896 6.667 5.850 9.330 hybrid contribution 0.243 -1.747 0.609 1.866 sum 3.139 4.920 6.459 8.705 Atomic orbital electron populations 1.81201 1.14287 1.10276 1.11011 1.29232 0.95107 0.91610 0.91263 1.19706 0.80084 1.01119 1.06176 1.21176 0.80633 0.96871 1.01762 1.48161 1.06176 1.57789 1.20095 1.19262 0.91365 0.92675 0.83977 1.21556 1.33949 0.94321 1.07621 0.93097 1.25417 0.95225 1.01429 0.94863 1.69970 1.35907 1.37289 1.11941 0.85809 0.77343 0.81745 0.78248 1.20742 1.21034 1.19708 1.20830 0.90800 0.75940 0.81450 1.90583 1.68470 1.52702 1.35308 1.21237 0.90266 0.97597 1.02480 0.88598 1.21429 0.96919 0.96687 0.98720 1.21590 0.93662 0.97070 1.02616 1.22054 1.00817 0.91727 0.92927 1.60179 1.06664 1.10637 1.54845 1.21724 0.88171 0.97140 0.98569 0.86210 0.84964 0.89465 0.90824 0.95004 0.94140 0.92567 0.91319 0.92515 0.91291 0.89187 0.88956 0.95414 0.83128 0.96544 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.01 18.54 20.01 0.37 -15.64 16 2 C 0.25 6.75 15.43 89.44 1.38 8.13 16 3 C -0.03 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.12 3.71 5.42 86.38 0.47 4.18 16 5 N -0.59 -21.29 2.46 -826.16 -2.03 -23.32 16 6 C 0.25 10.25 4.95 85.63 0.42 10.68 16 7 C -0.54 -25.13 7.44 25.60 0.19 -24.94 16 8 H 0.05 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.03 1.55 5.46 84.65 0.46 2.01 16 10 N -0.91 -46.93 13.29 21.45 0.28 -46.64 16 11 Si 0.94 39.83 29.54 68.60 2.03 41.86 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.52 19.10 6.76 87.66 0.59 19.70 16 16 O -0.59 -23.64 15.63 -3.04 -0.05 -23.69 16 17 C -0.09 -3.15 1.95 -11.49 -0.02 -3.18 16 18 H 0.10 3.40 6.11 -2.39 -0.01 3.38 16 19 C -0.10 -2.78 4.88 30.67 0.15 -2.63 16 20 C -0.11 -2.53 6.09 30.64 0.19 -2.35 16 21 C 0.05 1.24 6.55 86.32 0.57 1.81 16 22 N -0.69 -20.07 6.85 -514.00 -3.52 -23.59 16 23 C 0.07 2.53 5.79 86.33 0.50 3.03 16 24 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 26 H 0.09 2.72 8.07 -2.38 -0.02 2.70 16 27 H 0.07 2.39 7.36 -2.39 -0.02 2.37 16 28 H 0.03 1.36 8.10 -2.39 -0.02 1.34 16 29 H 0.04 1.78 5.66 -2.39 -0.01 1.76 16 30 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.70 7.78 -2.39 -0.02 1.69 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.35 9.12 8.90 -89.69 -0.80 8.33 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 3.36 5.89 -2.39 -0.01 3.35 16 Total: -1.00 -57.66 323.50 2.41 -55.25 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.26 Total: 19.86 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.07 Total: 15.91 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -4.89 Total: -109.19 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -57.66 2.41 -55.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.083 kcal (2) G-P(sol) polarization free energy of solvation -57.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds