Wall clock time and date at job start Mon Mar 30 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47172 * 107.47942 * 3 2 1 5 5 N 1.46501 * 109.47334 * 183.87310 * 4 3 2 6 6 C 1.46502 * 119.99401 * 95.40495 * 5 4 3 7 7 C 1.50693 * 109.47342 * 276.24537 * 6 5 4 8 8 H 1.08002 * 120.00006 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99957 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99967 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47354 * 59.99273 * 11 9 7 13 13 H 1.48508 * 109.46869 * 299.99480 * 11 9 7 14 14 H 1.48498 * 109.47105 * 179.97438 * 11 9 7 15 15 C 1.34771 * 120.00552 * 275.40845 * 5 4 3 16 16 O 1.21284 * 119.99690 * 4.99418 * 15 5 4 17 17 C 1.50699 * 120.00193 * 184.99971 * 15 5 4 18 18 H 1.09000 * 109.50035 * 306.39636 * 17 15 5 19 19 C 1.53121 * 109.50187 * 186.28352 * 17 15 5 20 20 C 1.53120 * 109.16102 * 182.40581 * 19 17 15 21 21 C 1.53035 * 109.28145 * 57.64688 * 20 19 17 22 22 N 1.46846 * 109.52700 * 300.82854 * 21 20 19 23 23 C 1.46847 * 111.19934 * 61.73622 * 22 21 20 24 24 H 1.08995 * 109.47230 * 347.48205 * 3 2 1 25 25 H 1.08999 * 109.47293 * 227.47529 * 3 2 1 26 26 H 1.09001 * 109.46914 * 63.87587 * 4 3 2 27 27 H 1.09002 * 109.47240 * 303.88308 * 4 3 2 28 28 H 1.09001 * 109.46829 * 156.24426 * 6 5 4 29 29 H 1.09004 * 109.47170 * 36.25016 * 6 5 4 30 30 H 0.97000 * 119.99717 * 0.02562 * 10 9 7 31 31 H 1.09008 * 109.52160 * 302.30686 * 19 17 15 32 32 H 1.08999 * 109.52567 * 62.49532 * 19 17 15 33 33 H 1.09002 * 109.49731 * 297.71009 * 20 19 17 34 34 H 1.08994 * 109.53441 * 177.61185 * 20 19 17 35 35 H 1.08993 * 109.46750 * 180.80540 * 21 20 19 36 36 H 1.09004 * 109.45978 * 60.84070 * 21 20 19 37 37 H 1.00892 * 111.00483 * 185.83719 * 22 21 20 38 38 H 1.09001 * 109.46531 * 178.24943 * 23 22 21 39 39 H 1.08992 * 109.46307 * 58.27769 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4342 -1.3759 5 7 4.5799 0.3462 -1.4050 6 6 5.2310 -0.8530 -1.9383 7 6 5.3066 -1.9046 -0.8616 8 1 4.9098 -1.7000 0.1218 9 6 5.8833 -3.1275 -1.1317 10 7 6.3670 -3.3764 -2.3291 11 14 5.9764 -4.4314 0.2028 12 1 4.6047 -4.7740 0.6567 13 1 6.7618 -3.9099 1.3503 14 1 6.6365 -5.6468 -0.3379 15 6 5.3260 1.3682 -0.9410 16 8 4.7896 2.3214 -0.4169 17 6 6.8265 1.3266 -1.0736 18 1 7.2043 0.3992 -0.6433 19 6 7.4382 2.5202 -0.3349 20 6 8.9575 2.5040 -0.5250 21 6 9.2801 2.5403 -2.0205 22 7 8.6736 1.3779 -2.6818 23 6 7.2109 1.3972 -2.5532 24 1 2.9718 -1.0024 0.2227 25 1 2.9711 0.6954 0.7574 26 1 2.8119 1.4623 -1.5693 27 1 2.6991 -0.2195 -2.1411 28 1 6.2377 -0.6017 -2.2722 29 1 4.6540 -1.2357 -2.7802 30 1 6.3183 -2.6995 -3.0221 31 1 7.0304 3.4468 -0.7393 32 1 7.2032 2.4507 0.7272 33 1 9.3694 1.5954 -0.0858 34 1 9.3951 3.3748 -0.0370 35 1 10.3608 2.5144 -2.1597 36 1 8.8799 3.4558 -2.4562 37 1 8.9508 1.3276 -3.6506 38 1 6.7887 0.5409 -3.0793 39 1 6.8203 2.3179 -2.9864 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:40 Heat of formation + Delta-G solvation = -19.275840 kcal Electronic energy + Delta-G solvation = -20777.459836 eV Core-core repulsion = 17719.524523 eV Total energy + Delta-G solvation = -3057.935313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97071 -37.68762 -36.52942 -35.39724 -33.07398 -31.99589 -31.61566 -30.12692 -26.86314 -24.80270 -23.59395 -23.10072 -22.52703 -19.81922 -18.60223 -17.68532 -17.00014 -16.40171 -16.14731 -15.28082 -14.94905 -14.50952 -14.34077 -13.87540 -13.75310 -13.55618 -13.17150 -13.05167 -12.89644 -12.69552 -12.43777 -12.20912 -11.99414 -11.70818 -11.41845 -11.18328 -11.04297 -10.79012 -10.62916 -10.47199 -10.36290 -10.18394 -10.13237 -9.33554 -9.15293 -8.52949 -8.32700 -7.88021 -6.53928 -4.30726 2.90316 3.03989 3.19425 3.36006 3.37450 3.54625 3.61272 4.31989 4.39157 4.46664 4.95942 4.98659 5.12952 5.17763 5.22451 5.34654 5.43733 5.51404 5.53046 5.67224 5.76082 5.89178 5.90463 5.98184 6.07301 6.10668 6.23918 6.27187 6.40064 6.47413 6.62885 6.80522 7.09176 7.25140 7.47471 7.78875 7.79742 7.98937 8.30003 8.61899 8.75882 9.39723 10.82353 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.008278 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.788183 B = 3381.708493 C = 5045.436556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.223 3.777 3 C -0.049 4.049 4 C 0.135 3.865 5 N -0.591 5.591 6 C 0.213 3.787 7 C -0.620 4.620 8 H 0.058 0.942 9 C 0.028 3.972 10 N -0.900 5.900 11 Si 1.064 2.936 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.282 1.282 15 C 0.523 3.477 16 O -0.567 6.567 17 C -0.101 4.101 18 H 0.115 0.885 19 C -0.098 4.098 20 C -0.118 4.118 21 C 0.057 3.943 22 N -0.684 5.684 23 C 0.064 3.936 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.269 0.731 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.343 0.657 38 H 0.094 0.906 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 8.700 -0.140 9.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.094 4.094 3 C -0.091 4.091 4 C 0.009 3.991 5 N -0.321 5.321 6 C 0.093 3.907 7 C -0.658 4.658 8 H 0.076 0.924 9 C -0.178 4.178 10 N -0.535 5.535 11 Si 0.892 3.108 12 H -0.214 1.214 13 H -0.212 1.212 14 H -0.207 1.207 15 C 0.311 3.689 16 O -0.447 6.447 17 C -0.122 4.122 18 H 0.133 0.867 19 C -0.136 4.136 20 C -0.156 4.156 21 C -0.072 4.072 22 N -0.315 5.315 23 C -0.065 4.065 24 H 0.143 0.857 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.161 0.839 38 H 0.112 0.888 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.304 7.215 0.952 7.993 hybrid contribution -0.341 2.029 -0.885 2.240 sum 2.963 9.244 0.067 9.708 Atomic orbital electron populations 1.81150 1.13121 1.10107 1.09132 1.29285 0.95252 0.92197 0.92704 1.19898 0.80827 1.06796 1.01536 1.21045 0.81484 1.01653 0.94889 1.48054 1.04926 1.18261 1.60857 1.19912 0.93825 0.81796 0.95138 1.22266 1.44417 1.00490 0.98667 0.92413 1.25730 0.92968 0.98720 1.00415 1.70833 1.42325 1.37470 1.02879 0.83588 0.76605 0.76006 0.74600 1.21380 1.21222 1.20680 1.20505 0.89415 0.81610 0.77329 1.90605 1.74239 1.34994 1.44863 1.21259 0.91704 1.02125 0.97122 0.86662 1.21367 0.94307 0.97337 1.00639 1.21609 0.96243 1.02236 0.95522 1.21936 0.98936 0.91122 0.95227 1.60171 1.08530 1.42687 1.20094 1.22058 0.88025 1.00989 0.95410 0.85660 0.87367 0.90721 0.90027 0.93152 0.95891 0.92080 0.91893 0.91417 0.90875 0.91691 0.91005 0.95601 0.83877 0.88823 0.95526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.17 18.54 42.15 0.78 -7.39 16 2 C 0.22 3.56 15.43 -20.76 -0.32 3.24 16 3 C -0.05 -0.75 5.99 -29.52 -0.18 -0.93 16 4 C 0.13 2.17 5.30 -4.04 -0.02 2.15 16 5 N -0.59 -10.79 2.47 -175.06 -0.43 -11.22 16 6 C 0.21 4.41 3.96 -5.20 -0.02 4.39 16 7 C -0.62 -14.61 9.04 -34.44 -0.31 -14.92 16 8 H 0.06 1.36 6.68 -52.49 -0.35 1.01 16 9 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 10 N -0.90 -24.08 13.65 55.43 0.76 -23.32 16 11 Si 1.06 22.86 29.90 -169.99 -5.08 17.78 16 12 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.52 9.65 6.93 -10.99 -0.08 9.57 16 16 O -0.57 -11.34 15.61 5.55 0.09 -11.26 16 17 C -0.10 -1.68 1.84 -91.69 -0.17 -1.85 16 18 H 0.12 2.19 7.68 -51.93 -0.40 1.79 16 19 C -0.10 -1.45 4.64 -26.61 -0.12 -1.58 16 20 C -0.12 -1.47 6.09 -26.65 -0.16 -1.63 16 21 C 0.06 0.68 6.55 -3.84 -0.03 0.65 16 22 N -0.68 -9.30 6.85 -113.82 -0.78 -10.08 16 23 C 0.06 0.98 5.45 -3.83 -0.02 0.96 16 24 H 0.13 2.03 6.63 -51.93 -0.34 1.69 16 25 H 0.11 1.63 8.09 -51.93 -0.42 1.21 16 26 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 27 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 28 H 0.05 1.06 3.84 -51.93 -0.20 0.86 16 29 H 0.02 0.50 7.83 -51.93 -0.41 0.09 16 30 H 0.27 7.02 7.22 -40.82 -0.29 6.73 16 31 H 0.06 0.95 7.96 -51.92 -0.41 0.54 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.34 3.98 8.90 -39.30 -0.35 3.63 16 38 H 0.09 1.53 5.38 -51.93 -0.28 1.25 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -27.97 319.65 -6.97 -34.95 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.60 Total: 5.08 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.52 Total: 0.64 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.33 Total: -52.01 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.08 Total: 17.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.97 -6.97 -34.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.670 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds