Wall clock time and date at job start Mon Mar 30 2020 04:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47172 * 107.47942 * 3 2 1 5 5 N 1.46501 * 109.47334 * 183.87310 * 4 3 2 6 6 C 1.46502 * 119.99401 * 95.40495 * 5 4 3 7 7 C 1.50693 * 109.47342 * 276.24537 * 6 5 4 8 8 H 1.08002 * 120.00006 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99957 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99967 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47354 * 59.99273 * 11 9 7 13 13 H 1.48508 * 109.46869 * 299.99480 * 11 9 7 14 14 H 1.48498 * 109.47105 * 179.97438 * 11 9 7 15 15 C 1.34771 * 120.00552 * 275.40845 * 5 4 3 16 16 O 1.21284 * 119.99690 * 4.99418 * 15 5 4 17 17 C 1.50699 * 120.00193 * 184.99971 * 15 5 4 18 18 H 1.09000 * 109.50035 * 306.39636 * 17 15 5 19 19 C 1.53121 * 109.50187 * 186.28352 * 17 15 5 20 20 C 1.53120 * 109.16102 * 182.40581 * 19 17 15 21 21 C 1.53035 * 109.28145 * 57.64688 * 20 19 17 22 22 N 1.46846 * 109.52700 * 300.82854 * 21 20 19 23 23 C 1.46847 * 111.19934 * 61.73622 * 22 21 20 24 24 H 1.08995 * 109.47230 * 347.48205 * 3 2 1 25 25 H 1.08999 * 109.47293 * 227.47529 * 3 2 1 26 26 H 1.09001 * 109.46914 * 63.87587 * 4 3 2 27 27 H 1.09002 * 109.47240 * 303.88308 * 4 3 2 28 28 H 1.09001 * 109.46829 * 156.24426 * 6 5 4 29 29 H 1.09004 * 109.47170 * 36.25016 * 6 5 4 30 30 H 0.97000 * 119.99717 * 0.02562 * 10 9 7 31 31 H 1.09008 * 109.52160 * 302.30686 * 19 17 15 32 32 H 1.08999 * 109.52567 * 62.49532 * 19 17 15 33 33 H 1.09002 * 109.49731 * 297.71009 * 20 19 17 34 34 H 1.08994 * 109.53441 * 177.61185 * 20 19 17 35 35 H 1.08993 * 109.46750 * 180.80540 * 21 20 19 36 36 H 1.09004 * 109.45978 * 60.84070 * 21 20 19 37 37 H 1.00892 * 111.00483 * 185.83719 * 22 21 20 38 38 H 1.09001 * 109.46531 * 178.24943 * 23 22 21 39 39 H 1.08992 * 109.46307 * 58.27769 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4342 -1.3759 5 7 4.5799 0.3462 -1.4050 6 6 5.2310 -0.8530 -1.9383 7 6 5.3066 -1.9046 -0.8616 8 1 4.9098 -1.7000 0.1218 9 6 5.8833 -3.1275 -1.1317 10 7 6.3670 -3.3764 -2.3291 11 14 5.9764 -4.4314 0.2028 12 1 4.6047 -4.7740 0.6567 13 1 6.7618 -3.9099 1.3503 14 1 6.6365 -5.6468 -0.3379 15 6 5.3260 1.3682 -0.9410 16 8 4.7896 2.3214 -0.4169 17 6 6.8265 1.3266 -1.0736 18 1 7.2043 0.3992 -0.6433 19 6 7.4382 2.5202 -0.3349 20 6 8.9575 2.5040 -0.5250 21 6 9.2801 2.5403 -2.0205 22 7 8.6736 1.3779 -2.6818 23 6 7.2109 1.3972 -2.5532 24 1 2.9718 -1.0024 0.2227 25 1 2.9711 0.6954 0.7574 26 1 2.8119 1.4623 -1.5693 27 1 2.6991 -0.2195 -2.1411 28 1 6.2377 -0.6017 -2.2722 29 1 4.6540 -1.2357 -2.7802 30 1 6.3183 -2.6995 -3.0221 31 1 7.0304 3.4468 -0.7393 32 1 7.2032 2.4507 0.7272 33 1 9.3694 1.5954 -0.0858 34 1 9.3951 3.3748 -0.0370 35 1 10.3608 2.5144 -2.1597 36 1 8.8799 3.4558 -2.4562 37 1 8.9508 1.3276 -3.6506 38 1 6.7887 0.5409 -3.0793 39 1 6.8203 2.3179 -2.9864 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:39 Heat of formation + Delta-G solvation = -36.478744 kcal Electronic energy + Delta-G solvation = -20778.205810 eV Core-core repulsion = 17719.524523 eV Total energy + Delta-G solvation = -3058.681287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38842 -38.89524 -37.90718 -36.95865 -34.82495 -33.30645 -32.81700 -31.38929 -28.61646 -26.08775 -25.08592 -24.52243 -23.81124 -21.00352 -20.01841 -19.30995 -18.39676 -17.89457 -17.48712 -16.64986 -16.33390 -15.82468 -15.58445 -15.46434 -15.03610 -14.80192 -14.68896 -14.54772 -14.11922 -14.03710 -13.75248 -13.60004 -13.43634 -13.19191 -12.88539 -12.70656 -12.40298 -12.29944 -11.93661 -11.82825 -11.68814 -11.62420 -11.34680 -11.05372 -10.66869 -10.39592 -9.50185 -9.38679 -8.49304 -6.26481 1.52412 1.63502 1.67095 1.71834 1.75769 1.85195 2.18271 2.63924 3.07942 3.27152 3.27281 3.71599 3.80507 3.91254 4.04798 4.11206 4.19029 4.35966 4.37067 4.45939 4.55419 4.71595 4.75208 4.77261 4.81421 4.93499 4.96919 5.01591 5.10770 5.15695 5.26379 5.44873 5.67596 5.95937 6.04783 6.23172 6.47424 6.51443 6.58066 6.70172 7.24680 7.50303 8.86937 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.008278 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.788183 B = 3381.708493 C = 5045.436556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.245 3.755 3 C -0.035 4.035 4 C 0.129 3.871 5 N -0.591 5.591 6 C 0.224 3.776 7 C -0.615 4.615 8 H 0.058 0.942 9 C -0.016 4.016 10 N -0.931 5.931 11 Si 1.100 2.900 12 H -0.274 1.274 13 H -0.274 1.274 14 H -0.291 1.291 15 C 0.521 3.479 16 O -0.581 6.581 17 C -0.098 4.098 18 H 0.090 0.910 19 C -0.094 4.094 20 C -0.115 4.115 21 C 0.057 3.943 22 N -0.695 5.695 23 C 0.073 3.927 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.015 0.985 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.355 0.645 38 H 0.078 0.922 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 9.553 0.345 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.072 4.072 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.320 5.320 6 C 0.103 3.897 7 C -0.654 4.654 8 H 0.076 0.924 9 C -0.217 4.217 10 N -0.568 5.568 11 Si 0.924 3.076 12 H -0.200 1.200 13 H -0.200 1.200 14 H -0.217 1.217 15 C 0.310 3.690 16 O -0.462 6.462 17 C -0.120 4.120 18 H 0.108 0.892 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.072 4.072 22 N -0.328 5.328 23 C -0.057 4.057 24 H 0.138 0.862 25 H 0.132 0.868 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.174 0.826 38 H 0.096 0.904 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.901 8.089 1.438 9.095 hybrid contribution -0.535 1.820 -1.039 2.163 sum 3.366 9.909 0.399 10.473 Atomic orbital electron populations 1.81179 1.13939 1.11120 1.10121 1.29210 0.94998 0.91233 0.91749 1.19748 0.80224 1.06481 1.01158 1.21193 0.80320 1.02432 0.95585 1.47993 1.05808 1.17488 1.60698 1.19646 0.93964 0.82019 0.94076 1.22550 1.42879 1.00783 0.99173 0.92418 1.26753 0.92869 1.00860 1.01178 1.70919 1.44530 1.37691 1.03639 0.83103 0.77279 0.73989 0.73187 1.19970 1.19977 1.21686 1.20816 0.90154 0.81232 0.76773 1.90593 1.74715 1.35421 1.45503 1.21238 0.90531 1.01842 0.98380 0.89158 1.21349 0.96000 0.96118 0.99786 1.21618 0.94330 1.02930 0.96372 1.22026 1.00099 0.90678 0.94428 1.60149 1.07381 1.43996 1.21265 1.21861 0.89312 1.00495 0.94001 0.86237 0.86793 0.89893 0.89353 0.93096 0.96742 0.92826 0.92060 0.92152 0.91880 0.89145 0.88863 0.94685 0.82568 0.90425 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.80 18.54 20.01 0.37 -16.43 16 2 C 0.25 7.51 15.43 89.44 1.38 8.89 16 3 C -0.04 -1.02 5.99 28.79 0.17 -0.85 16 4 C 0.13 4.03 5.30 86.38 0.46 4.49 16 5 N -0.59 -21.21 2.47 -826.15 -2.04 -23.25 16 6 C 0.22 9.26 3.96 85.63 0.34 9.60 16 7 C -0.62 -28.76 9.04 25.60 0.23 -28.53 16 8 H 0.06 2.66 6.68 -2.91 -0.02 2.64 16 9 C -0.02 -0.80 5.46 84.66 0.46 -0.33 16 10 N -0.93 -50.12 13.65 21.45 0.29 -49.83 16 11 Si 1.10 45.50 29.90 68.60 2.05 47.55 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 13 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 15 C 0.52 18.87 6.93 87.66 0.61 19.48 16 16 O -0.58 -22.63 15.61 -3.04 -0.05 -22.68 16 17 C -0.10 -3.24 1.84 -11.49 -0.02 -3.26 16 18 H 0.09 3.45 7.68 -2.39 -0.02 3.43 16 19 C -0.09 -2.67 4.64 30.67 0.14 -2.53 16 20 C -0.11 -2.61 6.09 30.65 0.19 -2.43 16 21 C 0.06 1.19 6.55 86.33 0.57 1.76 16 22 N -0.70 -17.91 6.85 -514.03 -3.52 -21.43 16 23 C 0.07 2.16 5.45 86.33 0.47 2.63 16 24 H 0.12 3.72 6.63 -2.39 -0.02 3.71 16 25 H 0.11 3.27 8.09 -2.39 -0.02 3.25 16 26 H 0.08 2.48 7.67 -2.39 -0.02 2.46 16 27 H 0.09 2.63 7.90 -2.39 -0.02 2.61 16 28 H 0.05 2.16 3.84 -2.39 -0.01 2.15 16 29 H 0.01 0.64 7.83 -2.38 -0.02 0.62 16 30 H 0.26 13.92 7.22 -92.71 -0.67 13.25 16 31 H 0.06 1.76 7.96 -2.38 -0.02 1.74 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.35 7.67 8.90 -89.70 -0.80 6.87 16 38 H 0.08 2.54 5.38 -2.39 -0.01 2.52 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -58.04 319.65 2.47 -55.58 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.37 Total: 21.60 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 4.99 Total: 8.90 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -4.90 Total: -110.94 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.05 Total: 47.55 kcal Total: -58.04 2.47 -55.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.097 kcal (2) G-P(sol) polarization free energy of solvation -58.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds