Wall clock time and date at job start Mon Mar 30 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30844 * 125.89683 * 2 1 4 4 N 1.40086 * 108.20791 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 8 6 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46956 * 89.99765 * 15 13 11 17 17 H 1.48497 * 109.47226 * 210.00189 * 15 13 11 18 18 H 1.48501 * 109.47027 * 329.99834 * 15 13 11 19 19 C 1.34955 * 107.92007 * 0.26772 * 4 3 2 20 20 C 1.50698 * 126.12046 * 179.73547 * 19 4 3 21 21 C 1.35316 * 107.74718 * 359.57319 * 19 4 3 22 22 C 1.50696 * 126.04033 * 180.15844 * 21 19 4 23 23 H 1.08999 * 109.46829 * 90.01989 * 1 2 3 24 24 H 1.09000 * 109.47024 * 210.01961 * 1 2 3 25 25 H 1.09002 * 109.46950 * 330.02430 * 1 2 3 26 26 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 27 27 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 28 28 H 1.08998 * 109.46921 * 89.99095 * 9 8 6 29 29 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 30 30 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 31 31 H 1.09001 * 109.47567 * 210.00057 * 10 8 6 32 32 H 1.09005 * 109.47076 * 330.00563 * 10 8 6 33 33 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47037 * 90.02744 * 20 19 4 35 35 H 1.09007 * 109.46412 * 210.02042 * 20 19 4 36 36 H 1.08991 * 109.47860 * 330.01996 * 20 19 4 37 37 H 1.09000 * 109.47565 * 270.29030 * 22 21 19 38 38 H 1.09010 * 109.46821 * 30.28664 * 22 21 19 39 39 H 1.08997 * 109.47206 * 150.28208 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6343 0.0006 5 6 4.7899 1.5009 0.0013 6 6 5.1945 1.7973 1.4224 7 8 4.5592 1.3302 2.3439 8 7 6.2661 2.5765 1.6694 9 6 7.0339 3.1405 0.5564 10 6 6.6631 2.8598 3.0508 11 6 7.6356 1.8084 3.5196 12 1 7.9289 1.0093 2.8549 13 6 8.1508 1.8664 4.7972 14 7 7.7933 2.8392 5.6069 15 14 9.3568 0.5635 5.3781 16 1 10.7424 0.9975 5.0665 17 1 9.2147 0.3758 6.8443 18 1 9.0721 -0.7187 4.6851 19 6 3.6143 -0.7152 -0.0050 20 6 4.8351 -1.5986 -0.0122 21 6 2.3272 -1.1329 0.0005 22 6 1.8600 -2.5656 0.0006 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3633 0.8902 0.5135 26 1 4.5564 2.4337 -0.5120 27 1 5.6094 0.9987 -0.5125 28 1 6.6193 4.1110 0.2839 29 1 8.0745 3.2613 0.8573 30 1 6.9791 2.4685 -0.3001 31 1 7.1370 3.8402 3.0990 32 1 5.7812 2.8505 3.6915 33 1 8.1560 2.8802 6.5055 34 1 5.1321 -1.8163 1.0138 35 1 4.6063 -2.5304 -0.5296 36 1 5.6499 -1.0885 -0.5258 37 1 1.7473 -2.9112 -1.0271 38 1 2.5936 -3.1870 0.5144 39 1 0.9013 -2.6352 0.5145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040730112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:53 Heat of formation + Delta-G solvation = 34.437554 kcal Electronic energy + Delta-G solvation = -20309.775900 eV Core-core repulsion = 17254.169774 eV Total energy + Delta-G solvation = -3055.606126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20126 -38.91313 -34.96796 -34.04394 -32.78975 -32.65127 -30.07711 -28.82174 -27.86673 -26.26600 -25.70717 -24.69638 -22.60367 -19.60301 -19.43260 -18.51751 -16.82147 -16.57344 -16.26688 -15.16811 -14.92514 -14.81099 -14.11044 -13.93613 -13.63651 -13.21329 -12.90606 -12.88163 -12.79982 -12.61467 -12.27907 -12.20335 -12.12537 -12.01212 -11.85508 -11.68118 -11.53172 -11.25603 -10.94429 -10.63283 -10.21676 -10.21483 -9.70069 -9.33381 -8.68818 -8.48466 -7.95043 -7.75931 -6.09122 -4.14548 2.05381 2.62144 2.94618 3.21419 3.26365 3.33560 3.37321 3.87100 4.39864 4.63966 4.78035 4.95016 5.05824 5.07362 5.23865 5.25603 5.36042 5.47832 5.50596 5.59913 5.61911 5.63607 5.79565 5.81955 5.93626 5.95865 6.07785 6.09686 6.26265 6.40677 6.89736 6.96887 7.23659 7.37126 7.43914 7.86203 8.00005 8.16555 8.26141 8.81041 8.95555 9.50511 10.99124 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.004939 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.597794 B = 5667.497557 C = 6058.408974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.072 3.928 3 N -0.289 5.289 4 N -0.349 5.349 5 C 0.113 3.887 6 C 0.488 3.512 7 O -0.520 6.520 8 N -0.599 5.599 9 C 0.080 3.920 10 C 0.246 3.754 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.100 3.900 20 C -0.093 4.093 21 C -0.249 4.249 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -6.275 -15.341 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 N -0.110 5.110 4 N -0.130 5.130 5 C -0.012 4.012 6 C 0.271 3.729 7 O -0.396 6.396 8 N -0.333 5.333 9 C -0.065 4.065 10 C 0.127 3.873 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.027 4.027 20 C -0.152 4.152 21 C -0.260 4.260 22 C -0.124 4.124 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.188 -5.059 -14.635 17.071 hybrid contribution 0.972 -1.280 0.453 1.670 sum -6.215 -6.339 -14.181 16.731 Atomic orbital electron populations 1.20112 0.87076 1.03084 1.02392 1.22113 0.96578 0.90475 1.00244 1.77263 0.86067 1.22590 1.25108 1.47747 1.04640 1.03718 1.56870 1.21591 0.85454 0.96361 0.97824 1.20423 0.81704 0.80528 0.90199 1.90739 1.53060 1.50352 1.45423 1.48164 1.27080 1.48443 1.09598 1.21709 0.98045 0.97517 0.89186 1.19326 0.96349 0.96367 0.75237 1.21393 1.25716 1.11012 0.98582 0.92481 1.24946 0.96835 0.95955 0.96345 1.69931 1.43890 1.31851 1.07554 0.86483 0.80946 0.81866 0.78042 1.20572 1.21027 1.19909 1.20786 0.96848 0.84401 1.00706 1.20467 0.92928 0.97898 1.03871 1.19598 0.91103 0.96463 1.18832 1.19993 1.00784 0.90758 1.00855 0.90933 0.90681 0.91109 0.86602 0.86802 0.93326 0.90265 0.92665 0.94761 0.93850 0.92629 0.89699 0.89845 0.91396 0.92633 0.92326 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.26 36.01 0.37 -0.42 16 2 C 0.07 1.16 7.22 -82.40 -0.59 0.57 16 3 N -0.29 -5.37 12.58 33.67 0.42 -4.95 16 4 N -0.35 -6.16 3.10 -58.32 -0.18 -6.34 16 5 C 0.11 1.78 5.28 -5.20 -0.03 1.76 16 6 C 0.49 10.34 7.74 -10.98 -0.09 10.25 16 7 O -0.52 -13.82 16.01 5.55 0.09 -13.73 16 8 N -0.60 -12.54 2.86 -182.95 -0.52 -13.06 16 9 C 0.08 1.17 10.25 59.85 0.61 1.79 16 10 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 11 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 12 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.10 1.60 6.93 -82.26 -0.57 1.03 16 20 C -0.09 -1.18 9.72 36.00 0.35 -0.83 16 21 C -0.25 -3.78 6.10 -105.06 -0.64 -4.42 16 22 C -0.07 -0.74 9.79 36.00 0.35 -0.39 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.73 7.26 -51.93 -0.38 0.35 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.12 1.55 8.11 -51.93 -0.42 1.13 16 27 H 0.11 1.39 6.30 -51.93 -0.33 1.06 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 31 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 36 H 0.07 0.76 7.08 -51.93 -0.37 0.39 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 7.79 -51.92 -0.40 0.22 16 39 H 0.06 0.62 7.26 -51.93 -0.38 0.24 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -36.46 330.38 -6.07 -42.53 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.89 Total: -2.46 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.68 Total: 2.23 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.46 Total: -50.23 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.46 -6.07 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040730112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.972 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds