Wall clock time and date at job start Mon Mar 30 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30844 * 125.89683 * 2 1 4 4 N 1.40086 * 108.20791 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 8 6 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46956 * 89.99765 * 15 13 11 17 17 H 1.48497 * 109.47226 * 210.00189 * 15 13 11 18 18 H 1.48501 * 109.47027 * 329.99834 * 15 13 11 19 19 C 1.34955 * 107.92007 * 0.26772 * 4 3 2 20 20 C 1.50698 * 126.12046 * 179.73547 * 19 4 3 21 21 C 1.35316 * 107.74718 * 359.57319 * 19 4 3 22 22 C 1.50696 * 126.04033 * 180.15844 * 21 19 4 23 23 H 1.08999 * 109.46829 * 90.01989 * 1 2 3 24 24 H 1.09000 * 109.47024 * 210.01961 * 1 2 3 25 25 H 1.09002 * 109.46950 * 330.02430 * 1 2 3 26 26 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 27 27 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 28 28 H 1.08998 * 109.46921 * 89.99095 * 9 8 6 29 29 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 30 30 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 31 31 H 1.09001 * 109.47567 * 210.00057 * 10 8 6 32 32 H 1.09005 * 109.47076 * 330.00563 * 10 8 6 33 33 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47037 * 90.02744 * 20 19 4 35 35 H 1.09007 * 109.46412 * 210.02042 * 20 19 4 36 36 H 1.08991 * 109.47860 * 330.01996 * 20 19 4 37 37 H 1.09000 * 109.47565 * 270.29030 * 22 21 19 38 38 H 1.09010 * 109.46821 * 30.28664 * 22 21 19 39 39 H 1.08997 * 109.47206 * 150.28208 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6343 0.0006 5 6 4.7899 1.5009 0.0013 6 6 5.1945 1.7973 1.4224 7 8 4.5592 1.3302 2.3439 8 7 6.2661 2.5765 1.6694 9 6 7.0339 3.1405 0.5564 10 6 6.6631 2.8598 3.0508 11 6 7.6356 1.8084 3.5196 12 1 7.9289 1.0093 2.8549 13 6 8.1508 1.8664 4.7972 14 7 7.7933 2.8392 5.6069 15 14 9.3568 0.5635 5.3781 16 1 10.7424 0.9975 5.0665 17 1 9.2147 0.3758 6.8443 18 1 9.0721 -0.7187 4.6851 19 6 3.6143 -0.7152 -0.0050 20 6 4.8351 -1.5986 -0.0122 21 6 2.3272 -1.1329 0.0005 22 6 1.8600 -2.5656 0.0006 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3633 0.8902 0.5135 26 1 4.5564 2.4337 -0.5120 27 1 5.6094 0.9987 -0.5125 28 1 6.6193 4.1110 0.2839 29 1 8.0745 3.2613 0.8573 30 1 6.9791 2.4685 -0.3001 31 1 7.1370 3.8402 3.0990 32 1 5.7812 2.8505 3.6915 33 1 8.1560 2.8802 6.5055 34 1 5.1321 -1.8163 1.0138 35 1 4.6063 -2.5304 -0.5296 36 1 5.6499 -1.0885 -0.5258 37 1 1.7473 -2.9112 -1.0271 38 1 2.5936 -3.1870 0.5144 39 1 0.9013 -2.6352 0.5145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040730112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:53 Heat of formation + Delta-G solvation = 9.286065 kcal Electronic energy + Delta-G solvation = -20310.866550 eV Core-core repulsion = 17254.169774 eV Total energy + Delta-G solvation = -3056.696776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.38229 -40.56268 -36.72524 -35.30282 -34.71274 -33.84844 -31.39755 -29.77717 -29.61622 -27.55419 -27.07349 -26.03905 -24.42264 -20.92436 -20.59622 -19.93932 -18.74608 -18.25636 -17.67879 -16.83707 -16.54876 -16.18971 -15.74307 -14.95677 -14.86152 -14.52047 -14.28682 -14.11374 -13.91125 -13.84197 -13.53545 -13.53238 -13.29098 -13.20497 -13.14654 -12.94104 -12.86135 -12.76320 -12.56346 -12.51505 -12.24628 -11.75393 -11.37347 -10.96429 -10.67660 -9.98161 -9.52638 -9.10712 -8.26015 -6.41402 0.82954 1.34808 1.38339 1.46836 1.49068 1.63237 1.82265 2.27386 2.41751 3.04174 3.49601 3.59024 3.72998 3.95644 4.03272 4.21765 4.38089 4.38288 4.56425 4.65027 4.68071 4.68965 4.80641 4.90405 4.93851 4.94876 5.01767 5.07508 5.15973 5.22974 5.24871 5.35522 5.49031 5.75094 5.86346 6.00171 6.11058 6.60563 6.68810 6.81264 7.20615 7.34996 8.81695 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.004939 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.597794 B = 5667.497557 C = 6058.408974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.061 3.939 3 N -0.336 5.336 4 N -0.366 5.366 5 C 0.125 3.875 6 C 0.480 3.520 7 O -0.588 6.588 8 N -0.604 5.604 9 C 0.071 3.929 10 C 0.260 3.740 11 C -0.542 4.542 12 H 0.058 0.942 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.971 3.029 16 H -0.260 1.260 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.080 3.920 20 C -0.091 4.091 21 C -0.260 4.260 22 C -0.063 4.063 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.027 0.973 32 H -0.010 1.010 33 H 0.267 0.733 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 -8.015 -17.636 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 N -0.158 5.158 4 N -0.148 5.148 5 C 0.000 4.000 6 C 0.267 3.733 7 O -0.468 6.468 8 N -0.336 5.336 9 C -0.070 4.070 10 C 0.138 3.862 11 C -0.580 4.580 12 H 0.076 0.924 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.795 3.205 16 H -0.185 1.185 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.046 4.046 20 C -0.149 4.149 21 C -0.271 4.271 22 C -0.121 4.121 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.045 0.955 32 H 0.008 0.992 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.429 -6.783 -16.994 19.394 hybrid contribution 0.674 -0.703 1.157 1.512 sum -5.755 -7.486 -15.837 18.438 Atomic orbital electron populations 1.20265 0.84488 1.03696 1.04044 1.22878 0.98409 0.90370 0.98847 1.77177 0.87113 1.24380 1.27140 1.47936 1.04591 1.04514 1.57755 1.21680 0.86460 0.98207 0.93673 1.21459 0.80617 0.79089 0.92166 1.90697 1.55144 1.52911 1.48085 1.48167 1.27822 1.48515 1.09052 1.22079 0.96987 0.99658 0.88308 1.18775 0.93620 0.95794 0.77964 1.21676 1.25932 1.11321 0.99080 0.92372 1.25919 0.98765 0.98194 0.96459 1.70064 1.45213 1.33782 1.07989 0.85368 0.79093 0.78814 0.77263 1.18515 1.20924 1.19484 1.21469 0.98461 0.84326 1.00360 1.20562 0.92240 0.98891 1.03161 1.20189 0.90919 0.98139 1.17881 1.20080 1.01256 0.88337 1.02439 0.88651 0.88754 0.91761 0.84049 0.82634 0.90885 0.90789 0.88120 0.95522 0.99186 0.92401 0.91756 0.86858 0.89703 0.90493 0.91884 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.26 71.24 0.73 -0.72 16 2 C 0.06 1.92 7.22 43.10 0.31 2.23 16 3 N -0.34 -12.52 12.58 -47.38 -0.60 -13.12 16 4 N -0.37 -12.66 3.10 -338.42 -1.05 -13.71 16 5 C 0.12 3.70 5.28 85.64 0.45 4.15 16 6 C 0.48 20.53 7.74 87.66 0.68 21.21 16 7 O -0.59 -32.71 16.01 -3.04 -0.05 -32.76 16 8 N -0.60 -25.35 2.86 -851.12 -2.43 -27.78 16 9 C 0.07 1.94 10.25 127.77 1.31 3.25 16 10 C 0.26 14.20 5.16 85.63 0.44 14.64 16 11 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 12 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 13 C 0.01 0.32 5.46 84.66 0.46 0.78 16 14 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 15 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 16 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 C 0.08 2.48 6.93 41.40 0.29 2.76 16 20 C -0.09 -2.11 9.72 71.24 0.69 -1.42 16 21 C -0.26 -7.57 6.10 -20.15 -0.12 -7.69 16 22 C -0.06 -1.26 9.79 71.23 0.70 -0.57 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.64 7.26 -2.39 -0.02 1.63 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.14 3.43 8.11 -2.38 -0.02 3.41 16 27 H 0.16 3.20 6.30 -2.39 -0.02 3.19 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 2.11 8.07 -2.39 -0.02 2.10 16 30 H 0.10 1.83 6.43 -2.39 -0.02 1.81 16 31 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 32 H -0.01 -0.65 7.42 -2.38 -0.02 -0.66 16 33 H 0.27 15.31 8.31 -92.72 -0.77 14.54 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.11 1.88 7.79 -2.38 -0.02 1.87 16 36 H 0.08 1.63 7.08 -2.39 -0.02 1.62 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.19 7.79 -2.38 -0.02 1.17 16 39 H 0.07 1.26 7.26 -2.39 -0.02 1.24 16 Total: -1.00 -84.82 330.38 5.40 -79.42 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.04 Total: 10.15 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.18 Total: 7.79 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -3.79 Total: -111.27 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -84.82 5.40 -79.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040730112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.706 kcal (2) G-P(sol) polarization free energy of solvation -84.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds