Wall clock time and date at job start Mon Mar 30 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 125.83893 * 2 1 4 4 N 1.40067 * 108.39138 * 179.80387 * 3 2 1 5 5 C 1.46500 * 126.04262 * 180.23317 * 4 3 2 6 6 C 1.35245 * 107.91107 * 0.36415 * 4 3 2 7 7 N 1.39214 * 126.21806 * 179.90374 * 6 4 3 8 8 C 1.46898 * 110.99961 * 65.92734 * 7 6 4 9 9 C 1.50702 * 109.47225 * 76.60670 * 8 7 6 10 10 H 1.08005 * 119.99966 * 355.18355 * 9 8 7 11 11 C 1.37877 * 120.00257 * 174.89616 * 9 8 7 12 12 N 1.31513 * 119.99900 * 0.28348 * 11 9 8 13 13 Si 1.86802 * 120.00177 * 180.27814 * 11 9 8 14 14 H 1.48497 * 109.47171 * 60.00509 * 13 11 9 15 15 H 1.48502 * 109.46836 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46996 * 300.00134 * 13 11 9 17 17 C 1.46891 * 111.00362 * 301.97400 * 7 6 4 18 18 C 1.53002 * 117.49987 * 245.47119 * 17 7 6 19 19 C 1.53001 * 60.00135 * 252.50423 * 18 17 7 20 20 C 1.36164 * 107.56177 * 359.64399 * 6 4 3 21 21 C 1.50701 * 126.09347 * 180.20449 * 20 6 4 22 22 O 1.42900 * 109.47115 * 90.00101 * 21 20 6 23 23 H 1.09000 * 109.46987 * 269.97311 * 1 2 3 24 24 H 1.08999 * 109.47281 * 29.97268 * 1 2 3 25 25 H 1.09005 * 109.47493 * 149.97291 * 1 2 3 26 26 H 1.08991 * 109.47126 * 275.78506 * 5 4 3 27 27 H 1.08998 * 109.47280 * 35.78848 * 5 4 3 28 28 H 1.09007 * 109.46638 * 155.78976 * 5 4 3 29 29 H 1.08997 * 109.47278 * 316.61129 * 8 7 6 30 30 H 1.08997 * 109.47450 * 196.61097 * 8 7 6 31 31 H 0.96995 * 120.00469 * 179.97438 * 12 11 9 32 32 H 1.09005 * 115.55252 * 31.17261 * 17 7 6 33 33 H 1.08996 * 117.49715 * 359.97438 * 18 17 7 34 34 H 1.08997 * 117.49911 * 145.01816 * 18 17 7 35 35 H 1.08998 * 117.49997 * 252.51296 * 19 18 17 36 36 H 1.08999 * 117.49468 * 107.48105 * 19 18 17 37 37 H 1.09003 * 109.47094 * 210.00054 * 21 20 6 38 38 H 1.08999 * 109.47499 * 329.99830 * 21 20 6 39 39 H 0.96697 * 113.99989 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0607 0.0000 4 7 3.6092 0.6407 0.0045 5 6 4.7867 1.5123 0.0109 6 6 3.6202 -0.7117 -0.0009 7 7 4.7500 -1.5251 -0.0008 8 6 5.5003 -1.3838 1.2542 9 6 4.7963 -2.1438 2.3487 10 1 3.8434 -2.6132 2.1534 11 6 5.3713 -2.2448 3.5977 12 7 6.5316 -1.6733 3.8356 13 14 4.5023 -3.1934 4.9522 14 1 4.3166 -4.6042 4.5277 15 1 5.3222 -3.1522 6.1897 16 1 3.1772 -2.5773 5.2161 17 6 5.6050 -1.2388 -1.1604 18 6 5.7701 -2.3432 -2.2063 19 6 6.9283 -1.9993 -1.2675 20 6 2.3254 -1.1331 -0.0006 21 6 1.8580 -2.5658 -0.0013 22 8 1.7109 -3.0195 1.3458 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5143 26 1 5.0212 1.8136 -1.0100 27 1 4.5804 2.3974 0.6127 28 1 5.6347 0.9742 0.4347 29 1 5.5606 -0.3297 1.5248 30 1 6.5059 -1.7834 1.1233 31 1 6.9361 -1.7440 4.7143 32 1 5.5868 -0.2081 -1.5149 33 1 5.2446 -3.2823 -2.0338 34 1 5.8604 -2.0392 -3.2491 35 1 7.7805 -1.4692 -1.6927 36 1 7.1643 -2.7122 -0.4775 37 1 0.8990 -2.6349 -0.5148 38 1 2.5912 -3.1869 -0.5158 39 1 1.4116 -3.9358 1.4217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:20 Heat of formation + Delta-G solvation = 68.566488 kcal Electronic energy + Delta-G solvation = -21344.165069 eV Core-core repulsion = 18290.038885 eV Total energy + Delta-G solvation = -3054.126184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93759 -37.74536 -35.99794 -34.23706 -33.07102 -32.15601 -29.62156 -29.01738 -26.96829 -25.53375 -23.66087 -22.80360 -21.77685 -20.94585 -19.22391 -18.73333 -16.81404 -16.60475 -15.93859 -15.47450 -15.18011 -14.62135 -14.19590 -13.95096 -13.65689 -13.22299 -13.10850 -12.81205 -12.48285 -12.24268 -12.11967 -12.00308 -11.51373 -11.37672 -11.23799 -11.00600 -10.87649 -10.58329 -10.31213 -10.08046 -10.05827 -9.71175 -9.30730 -9.10077 -8.45631 -8.37887 -7.74644 -7.71206 -5.99279 -3.97293 2.43383 3.01858 3.23307 3.41207 3.43309 3.50309 4.13961 4.27462 4.57641 4.92299 5.21338 5.31928 5.33632 5.38475 5.41561 5.46412 5.51989 5.59445 5.66040 5.77032 5.87538 5.92781 5.95151 6.01977 6.11456 6.21921 6.28329 6.54830 6.59260 6.59991 6.99141 7.02288 7.24143 7.33811 7.72467 8.08449 8.22832 8.30145 8.36745 8.46607 9.19217 9.66836 11.12078 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.009477 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.018508 B = 2953.802454 C = 3796.957747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.086 3.914 3 N -0.312 5.312 4 N -0.394 5.394 5 C 0.095 3.905 6 C 0.323 3.677 7 N -0.439 5.439 8 C 0.190 3.810 9 C -0.503 4.503 10 H 0.089 0.911 11 C 0.054 3.946 12 N -0.907 5.907 13 Si 0.903 3.097 14 H -0.276 1.276 15 H -0.292 1.292 16 H -0.276 1.276 17 C -0.003 4.003 18 C -0.166 4.166 19 C -0.168 4.168 20 C -0.231 4.231 21 C 0.173 3.827 22 O -0.555 6.555 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.094 0.906 29 H -0.003 1.003 30 H 0.048 0.952 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.035 0.965 38 H 0.050 0.950 39 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 0.443 -10.971 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 N -0.136 5.136 4 N -0.179 5.179 5 C -0.047 4.047 6 C 0.104 3.896 7 N -0.162 5.162 8 C 0.068 3.932 9 C -0.542 4.542 10 H 0.106 0.894 11 C -0.146 4.146 12 N -0.548 5.548 13 Si 0.731 3.269 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.202 1.202 17 C -0.111 4.111 18 C -0.204 4.204 19 C -0.205 4.205 20 C -0.244 4.244 21 C 0.094 3.906 22 O -0.358 6.358 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.014 0.986 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.867 1.953 -10.716 11.931 hybrid contribution 0.006 -0.901 0.854 1.241 sum -4.862 1.053 -9.862 11.046 Atomic orbital electron populations 1.20086 0.87325 1.02295 1.02709 1.21917 0.96356 0.90461 0.99277 1.77100 0.86238 1.22564 1.27668 1.49014 1.05284 1.05438 1.58178 1.22006 0.85338 0.95258 1.02110 1.19460 0.93650 0.80577 0.95924 1.59882 1.05498 1.46590 1.04262 1.20100 0.93909 0.96176 0.83015 1.21435 1.06765 1.32179 0.93787 0.89352 1.24945 0.94937 0.96081 0.98663 1.69945 1.17031 1.45173 1.22651 0.86467 0.79481 0.80442 0.80494 1.20181 1.21837 1.20150 1.22525 0.97895 0.95054 0.95622 1.23044 1.02260 1.00453 0.94609 1.23082 0.91023 1.03637 1.02764 1.18965 0.90238 0.94973 1.20177 1.19915 0.96951 0.90302 0.83417 1.86755 1.90556 1.31764 1.26766 0.90719 0.91545 0.90930 0.91758 0.89855 0.88723 0.98585 0.93451 0.93063 0.89939 0.88174 0.89444 0.89076 0.87378 0.94703 0.93135 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.26 36.00 0.37 -0.56 16 2 C 0.09 1.66 7.21 -82.44 -0.59 1.06 16 3 N -0.31 -6.44 12.56 33.65 0.42 -6.01 16 4 N -0.39 -8.12 3.99 -67.24 -0.27 -8.38 16 5 C 0.09 1.61 9.49 59.85 0.57 2.18 16 6 C 0.32 6.99 5.07 -153.41 -0.78 6.21 16 7 N -0.44 -9.40 4.56 -167.04 -0.76 -10.16 16 8 C 0.19 4.81 4.30 -4.98 -0.02 4.79 16 9 C -0.50 -14.28 8.99 -34.44 -0.31 -14.59 16 10 H 0.09 2.55 6.08 -52.48 -0.32 2.23 16 11 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 12 N -0.91 -26.92 13.29 55.43 0.74 -26.19 16 13 Si 0.90 22.64 29.54 -169.99 -5.02 17.62 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.00 -0.05 4.65 -67.71 -0.31 -0.36 16 18 C -0.17 -2.45 10.46 -26.73 -0.28 -2.73 16 19 C -0.17 -2.64 9.49 -26.73 -0.25 -2.89 16 20 C -0.23 -4.76 5.76 -104.79 -0.60 -5.36 16 21 C 0.17 3.06 7.29 36.01 0.26 3.33 16 22 O -0.55 -10.68 11.98 -35.23 -0.42 -11.10 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16 26 H 0.06 0.90 7.80 -51.93 -0.40 0.50 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.09 1.72 5.12 -51.93 -0.27 1.45 16 29 H 0.00 -0.09 5.50 -51.93 -0.29 -0.38 16 30 H 0.05 1.24 6.15 -51.93 -0.32 0.92 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.08 1.38 6.12 -51.93 -0.32 1.06 16 33 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.11 1.93 7.15 -51.93 -0.37 1.56 16 37 H 0.03 0.50 7.25 -51.93 -0.38 0.13 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.36 5.03 9.12 45.56 0.42 5.44 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -33.97 318.49 -7.28 -41.25 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.72 Total: 5.64 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.05 Total: -7.47 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.13 Total: -50.75 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.42 Total: -11.10 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.97 -7.28 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.820 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds