Wall clock time and date at job start Mon Mar 30 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 125.83893 * 2 1 4 4 N 1.40067 * 108.39138 * 179.80387 * 3 2 1 5 5 C 1.46500 * 126.04262 * 180.23317 * 4 3 2 6 6 C 1.35245 * 107.91107 * 0.36415 * 4 3 2 7 7 N 1.39214 * 126.21806 * 179.90374 * 6 4 3 8 8 C 1.46898 * 110.99961 * 65.92734 * 7 6 4 9 9 C 1.50702 * 109.47225 * 76.60670 * 8 7 6 10 10 H 1.08005 * 119.99966 * 355.18355 * 9 8 7 11 11 C 1.37877 * 120.00257 * 174.89616 * 9 8 7 12 12 N 1.31513 * 119.99900 * 0.28348 * 11 9 8 13 13 Si 1.86802 * 120.00177 * 180.27814 * 11 9 8 14 14 H 1.48497 * 109.47171 * 60.00509 * 13 11 9 15 15 H 1.48502 * 109.46836 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46996 * 300.00134 * 13 11 9 17 17 C 1.46891 * 111.00362 * 301.97400 * 7 6 4 18 18 C 1.53002 * 117.49987 * 245.47119 * 17 7 6 19 19 C 1.53001 * 60.00135 * 252.50423 * 18 17 7 20 20 C 1.36164 * 107.56177 * 359.64399 * 6 4 3 21 21 C 1.50701 * 126.09347 * 180.20449 * 20 6 4 22 22 O 1.42900 * 109.47115 * 90.00101 * 21 20 6 23 23 H 1.09000 * 109.46987 * 269.97311 * 1 2 3 24 24 H 1.08999 * 109.47281 * 29.97268 * 1 2 3 25 25 H 1.09005 * 109.47493 * 149.97291 * 1 2 3 26 26 H 1.08991 * 109.47126 * 275.78506 * 5 4 3 27 27 H 1.08998 * 109.47280 * 35.78848 * 5 4 3 28 28 H 1.09007 * 109.46638 * 155.78976 * 5 4 3 29 29 H 1.08997 * 109.47278 * 316.61129 * 8 7 6 30 30 H 1.08997 * 109.47450 * 196.61097 * 8 7 6 31 31 H 0.96995 * 120.00469 * 179.97438 * 12 11 9 32 32 H 1.09005 * 115.55252 * 31.17261 * 17 7 6 33 33 H 1.08996 * 117.49715 * 359.97438 * 18 17 7 34 34 H 1.08997 * 117.49911 * 145.01816 * 18 17 7 35 35 H 1.08998 * 117.49997 * 252.51296 * 19 18 17 36 36 H 1.08999 * 117.49468 * 107.48105 * 19 18 17 37 37 H 1.09003 * 109.47094 * 210.00054 * 21 20 6 38 38 H 1.08999 * 109.47499 * 329.99830 * 21 20 6 39 39 H 0.96697 * 113.99989 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0607 0.0000 4 7 3.6092 0.6407 0.0045 5 6 4.7867 1.5123 0.0109 6 6 3.6202 -0.7117 -0.0009 7 7 4.7500 -1.5251 -0.0008 8 6 5.5003 -1.3838 1.2542 9 6 4.7963 -2.1438 2.3487 10 1 3.8434 -2.6132 2.1534 11 6 5.3713 -2.2448 3.5977 12 7 6.5316 -1.6733 3.8356 13 14 4.5023 -3.1934 4.9522 14 1 4.3166 -4.6042 4.5277 15 1 5.3222 -3.1522 6.1897 16 1 3.1772 -2.5773 5.2161 17 6 5.6050 -1.2388 -1.1604 18 6 5.7701 -2.3432 -2.2063 19 6 6.9283 -1.9993 -1.2675 20 6 2.3254 -1.1331 -0.0006 21 6 1.8580 -2.5658 -0.0013 22 8 1.7109 -3.0195 1.3458 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5143 26 1 5.0212 1.8136 -1.0100 27 1 4.5804 2.3974 0.6127 28 1 5.6347 0.9742 0.4347 29 1 5.5606 -0.3297 1.5248 30 1 6.5059 -1.7834 1.1233 31 1 6.9361 -1.7440 4.7143 32 1 5.5868 -0.2081 -1.5149 33 1 5.2446 -3.2823 -2.0338 34 1 5.8604 -2.0392 -3.2491 35 1 7.7805 -1.4692 -1.6927 36 1 7.1643 -2.7122 -0.4775 37 1 0.8990 -2.6349 -0.5148 38 1 2.5912 -3.1869 -0.5158 39 1 1.4116 -3.9358 1.4217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042547567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:20 Heat of formation + Delta-G solvation = 43.691983 kcal Electronic energy + Delta-G solvation = -21345.243708 eV Core-core repulsion = 18290.038885 eV Total energy + Delta-G solvation = -3055.204823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43673 -39.20170 -37.41626 -35.77925 -34.78094 -33.95807 -31.10342 -30.39643 -28.84053 -27.02680 -25.07296 -24.64645 -23.12556 -22.39696 -20.72280 -20.21748 -18.55267 -18.11615 -17.66697 -17.09227 -16.64276 -16.39883 -15.78712 -15.39113 -15.17781 -14.63586 -14.38683 -14.31570 -14.12575 -13.82998 -13.46738 -13.35411 -13.05010 -12.97028 -12.77357 -12.66188 -12.54448 -12.25237 -12.08907 -11.75366 -11.40129 -11.39676 -11.01250 -10.61939 -10.55101 -9.92798 -9.41075 -9.24023 -8.18346 -6.22487 0.88602 1.38669 1.42913 1.50472 1.59258 1.76920 2.41023 2.77307 2.91440 3.16542 3.53909 3.90568 4.02733 4.05616 4.14635 4.18304 4.20752 4.25788 4.41363 4.43526 4.57280 4.70076 4.75996 4.78741 4.90734 4.92718 5.03824 5.07110 5.11065 5.22833 5.32967 5.33541 5.63383 5.77894 5.88015 5.98321 6.35757 6.67411 6.82938 6.97836 7.22241 7.45063 8.92405 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.009477 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.018508 B = 2953.802454 C = 3796.957747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.080 3.920 3 N -0.332 5.332 4 N -0.405 5.405 5 C 0.092 3.908 6 C 0.297 3.703 7 N -0.440 5.440 8 C 0.208 3.792 9 C -0.517 4.517 10 H 0.082 0.918 11 C 0.004 3.996 12 N -0.937 5.937 13 Si 0.962 3.038 14 H -0.263 1.263 15 H -0.286 1.286 16 H -0.281 1.281 17 C -0.031 4.031 18 C -0.139 4.139 19 C -0.165 4.165 20 C -0.251 4.251 21 C 0.175 3.825 22 O -0.584 6.584 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.077 0.923 29 H -0.027 1.027 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 -0.094 -12.214 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 N -0.156 5.156 4 N -0.190 5.190 5 C -0.049 4.049 6 C 0.077 3.923 7 N -0.163 5.163 8 C 0.085 3.915 9 C -0.555 4.555 10 H 0.100 0.900 11 C -0.193 4.193 12 N -0.579 5.579 13 Si 0.788 3.212 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.207 1.207 17 C -0.139 4.139 18 C -0.177 4.177 19 C -0.202 4.202 20 C -0.263 4.263 21 C 0.097 3.903 22 O -0.392 6.392 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.096 0.904 29 H -0.009 1.009 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.158 1.398 -11.982 13.544 hybrid contribution 0.392 -0.711 1.187 1.438 sum -5.766 0.687 -10.795 12.258 Atomic orbital electron populations 1.20254 0.83958 1.04429 1.03456 1.22681 0.98455 0.89574 0.97845 1.77052 0.86443 1.23520 1.28582 1.49252 1.05953 1.05580 1.58245 1.22113 0.83986 0.94711 1.04050 1.19730 0.94104 0.81196 0.97229 1.59729 1.05685 1.47176 1.03701 1.19672 0.93264 0.94026 0.84585 1.21767 1.06660 1.32111 0.94955 0.89968 1.25732 0.95642 0.97078 1.00891 1.70051 1.18257 1.46417 1.23126 0.85544 0.77981 0.79730 0.77989 1.18747 1.21199 1.20690 1.22719 0.98904 0.96578 0.95658 1.23121 1.00200 0.98782 0.95553 1.23086 0.91680 1.02925 1.02547 1.19550 0.90262 0.96806 1.19730 1.20002 0.98639 0.88632 0.83049 1.86673 1.90905 1.33781 1.27792 0.90465 0.89858 0.88408 0.88657 0.89207 0.90450 1.00905 0.95083 0.93046 0.89047 0.88798 0.86044 0.86338 0.90086 0.90836 0.93775 0.76652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.26 71.23 0.73 -0.89 16 2 C 0.08 3.00 7.21 43.08 0.31 3.31 16 3 N -0.33 -13.49 12.56 -47.45 -0.60 -14.09 16 4 N -0.40 -16.69 3.99 -366.66 -1.46 -18.15 16 5 C 0.09 3.15 9.49 127.77 1.21 4.37 16 6 C 0.30 12.85 5.07 131.42 0.67 13.52 16 7 N -0.44 -19.05 4.56 -682.38 -3.11 -22.17 16 8 C 0.21 10.87 4.30 85.56 0.37 11.24 16 9 C -0.52 -29.88 8.99 25.60 0.23 -29.65 16 10 H 0.08 4.79 6.08 -2.91 -0.02 4.78 16 11 C 0.00 0.21 5.46 84.65 0.46 0.68 16 12 N -0.94 -56.71 13.29 21.45 0.28 -56.42 16 13 Si 0.96 46.76 29.54 68.60 2.03 48.79 16 14 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 16 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 17 C -0.03 -1.07 4.65 44.92 0.21 -0.86 16 18 C -0.14 -3.83 10.46 30.60 0.32 -3.51 16 19 C -0.16 -5.07 9.49 30.60 0.29 -4.78 16 20 C -0.25 -10.12 5.76 -19.98 -0.11 -10.23 16 21 C 0.17 5.92 7.29 71.24 0.52 6.44 16 22 O -0.58 -21.77 11.98 -148.98 -1.78 -23.55 16 23 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 2.01 7.25 -2.38 -0.02 1.99 16 26 H 0.10 2.59 7.80 -2.39 -0.02 2.57 16 27 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.08 2.91 5.12 -2.38 -0.01 2.89 16 29 H -0.03 -1.49 5.50 -2.39 -0.01 -1.50 16 30 H 0.03 1.70 6.15 -2.39 -0.01 1.69 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.09 2.98 6.12 -2.38 -0.01 2.96 16 33 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.08 2.95 7.15 -2.39 -0.02 2.94 16 37 H 0.07 1.88 7.25 -2.39 -0.02 1.87 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.39 10.02 9.12 -74.06 -0.68 9.35 16 Total: -1.00 -74.12 318.49 0.95 -73.17 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.40 Total: 22.80 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 5.20 Total: -10.38 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.89 Total: -110.83 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -1.78 Total: -23.55 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.12 0.95 -73.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.860 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds