Wall clock time and date at job start Mon Mar 30 2020 04:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47188 * 283.87035 * 3 2 1 5 5 C 1.37098 * 119.99967 * 263.80246 * 4 3 2 6 6 H 1.08000 * 120.00049 * 142.48091 * 5 4 3 7 7 C 1.38947 * 120.00027 * 322.47157 * 5 4 3 8 8 N 1.31409 * 120.00047 * 157.59328 * 7 5 4 9 9 Si 1.86805 * 120.00129 * 337.59716 * 7 5 4 10 10 H 1.48499 * 109.47198 * 95.70142 * 9 7 5 11 11 H 1.48497 * 109.47104 * 215.70360 * 9 7 5 12 12 H 1.48500 * 109.46674 * 335.70343 * 9 7 5 13 13 C 1.34773 * 119.99915 * 83.79754 * 4 3 2 14 14 O 1.21298 * 119.99946 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00318 * 359.97438 * 13 4 3 16 16 C 1.53000 * 109.47468 * 179.97438 * 15 13 4 17 17 C 1.52998 * 109.47121 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.53448 * 54.90323 * 17 16 15 19 19 C 1.53121 * 109.50117 * 175.00267 * 17 16 15 20 20 C 1.53129 * 109.15826 * 177.59722 * 19 17 16 21 21 C 1.53031 * 109.27843 * 302.34426 * 20 19 17 22 22 N 1.46858 * 109.52310 * 59.18011 * 21 20 19 23 23 C 1.46838 * 111.19848 * 298.25685 * 22 21 20 24 24 H 1.09002 * 109.47000 * 163.87267 * 3 2 1 25 25 H 1.08996 * 109.47396 * 43.87615 * 3 2 1 26 26 H 0.97009 * 120.00106 * 180.02562 * 8 7 5 27 27 H 1.09008 * 109.46715 * 59.99999 * 15 13 4 28 28 H 1.09004 * 109.47597 * 300.00594 * 15 13 4 29 29 H 1.09003 * 109.46504 * 60.00687 * 16 15 13 30 30 H 1.08997 * 109.47376 * 300.00308 * 16 15 13 31 31 H 1.08994 * 109.52175 * 57.69391 * 19 17 16 32 32 H 1.08998 * 109.52026 * 297.49926 * 19 17 16 33 33 H 1.08995 * 109.50179 * 62.28763 * 20 19 17 34 34 H 1.09000 * 109.49875 * 182.36574 * 20 19 17 35 35 H 1.09001 * 109.46607 * 179.19266 * 21 20 19 36 36 H 1.09003 * 109.46935 * 299.18048 * 21 20 19 37 37 H 1.00901 * 110.99534 * 174.16062 * 22 21 20 38 38 H 1.09004 * 109.46646 * 181.75473 * 23 22 21 39 39 H 1.09008 * 109.46587 * 301.72889 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3302 1.3409 5 6 3.4454 0.6712 2.2098 6 1 3.2255 0.5735 3.2627 7 6 4.0820 1.8117 1.7359 8 7 4.0285 2.9287 2.4260 9 14 5.0139 1.7572 0.1178 10 1 4.1345 2.2416 -0.9764 11 1 6.2150 2.6255 0.2088 12 1 5.4327 0.3609 -0.1652 13 6 3.2028 -1.6191 1.7203 14 8 3.6068 -1.8930 2.8308 15 6 2.8186 -2.7198 0.7655 16 6 3.0329 -4.0769 1.4388 17 6 2.6435 -5.1945 0.4691 18 1 3.1975 -5.0782 -0.4624 19 6 2.9742 -6.5523 1.0947 20 6 2.5266 -7.6661 0.1438 21 6 1.0284 -7.5223 -0.1330 22 7 0.7639 -6.2075 -0.7314 23 6 1.1418 -5.1223 0.1827 24 1 2.9709 0.9881 -0.2855 25 1 2.9717 -0.7399 -0.7122 26 1 4.4727 3.7251 2.0950 27 1 3.4377 -2.6569 -0.1295 28 1 1.7695 -2.6122 0.4899 29 1 2.4141 -4.1401 2.3339 30 1 4.0821 -4.1844 1.7140 31 1 2.4505 -6.6526 2.0453 32 1 4.0491 -6.6249 1.2603 33 1 3.0788 -7.5888 -0.7927 34 1 2.7212 -8.6358 0.6021 35 1 0.7094 -8.3052 -0.8210 36 1 0.4758 -7.6132 0.8022 37 1 -0.2022 -6.1252 -1.0106 38 1 0.9053 -4.1622 -0.2759 39 1 0.5888 -5.2248 1.1165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043588003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:33 Heat of formation + Delta-G solvation = -9.665494 kcal Electronic energy + Delta-G solvation = -20269.181821 eV Core-core repulsion = 17211.663244 eV Total energy + Delta-G solvation = -3057.518577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.42035 -38.60729 -36.30314 -34.83065 -33.94311 -32.24440 -31.86865 -29.41391 -27.75355 -25.68651 -23.91547 -23.61214 -21.16794 -19.67081 -18.99355 -18.46359 -16.90327 -16.61893 -15.92713 -15.49395 -15.33914 -14.60444 -14.33099 -14.00942 -13.89872 -13.65002 -13.23308 -13.16400 -12.94655 -12.69075 -12.53571 -12.30983 -11.96600 -11.87297 -11.62125 -11.41718 -11.19340 -10.96594 -10.82349 -10.56715 -10.46236 -10.34311 -10.14528 -10.03390 -9.26219 -8.68749 -8.59871 -8.05366 -6.50793 -4.11728 2.89105 3.01566 3.09112 3.14570 3.23446 3.55539 4.01896 4.06229 4.29690 4.47103 4.68915 4.78637 4.84280 4.94004 5.03946 5.23227 5.29508 5.38381 5.41916 5.50117 5.54342 5.55836 5.66612 5.70847 5.78307 5.86977 5.91611 5.99556 5.99789 6.16521 6.24567 6.45444 6.57991 6.89602 7.22102 7.37445 7.94554 8.13536 8.32830 8.81209 9.14344 9.55783 10.60967 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.004870 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.803409 B = 5747.670825 C = 6131.629856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.207 3.793 3 C 0.179 3.821 4 N -0.466 5.466 5 C -0.325 4.325 6 H 0.108 0.892 7 C 0.062 3.938 8 N -0.855 5.855 9 Si 0.860 3.140 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.255 1.255 13 C 0.475 3.525 14 O -0.548 6.548 15 C -0.144 4.144 16 C -0.094 4.094 17 C -0.085 4.085 18 H 0.078 0.922 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.057 3.943 22 N -0.691 5.691 23 C 0.059 3.941 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.276 0.724 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.341 0.659 38 H 0.076 0.924 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 -15.857 -9.041 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.112 4.112 3 C 0.052 3.948 4 N -0.190 5.190 5 C -0.451 4.451 6 H 0.126 0.874 7 C -0.145 4.145 8 N -0.490 5.490 9 Si 0.686 3.314 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.179 1.179 13 C 0.264 3.736 14 O -0.427 6.427 15 C -0.184 4.184 16 C -0.133 4.133 17 C -0.104 4.104 18 H 0.097 0.903 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.073 4.073 22 N -0.322 5.322 23 C -0.070 4.070 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.518 -15.773 -8.741 18.208 hybrid contribution 0.145 0.350 -0.206 0.431 sum -2.373 -15.422 -8.946 17.986 Atomic orbital electron populations 1.81054 1.13215 1.09462 1.08446 1.30081 0.95825 0.92549 0.92793 1.19572 0.81023 1.04553 0.89674 1.43674 1.57560 1.05770 1.11947 1.19055 1.38369 0.95051 0.92662 0.87417 1.25380 0.96121 0.94778 0.98209 1.69758 1.39650 0.99841 1.39766 0.87190 0.81039 0.79759 0.83397 1.19705 1.20608 1.17918 1.20424 0.81092 0.83046 0.88998 1.90581 1.47844 1.82265 1.21999 1.21788 1.02385 0.94850 0.99407 1.21317 1.02851 0.91406 0.97722 1.21238 0.95350 0.94531 0.99263 0.90334 1.21627 1.01292 0.94215 0.98302 1.21585 0.95512 0.98292 1.00131 1.21920 0.96703 0.91246 0.97394 1.60278 1.26897 1.02290 1.42760 1.22073 0.96117 0.94414 0.94425 0.86868 0.87299 0.91318 0.89562 0.90319 0.91447 0.90802 0.92240 0.91574 0.91220 0.91859 0.91160 0.95437 0.84190 0.90519 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.85 18.54 42.15 0.78 -8.07 16 2 C 0.21 3.86 15.00 -20.76 -0.31 3.55 16 3 C 0.18 3.21 4.27 -6.83 -0.03 3.18 16 4 N -0.47 -10.39 2.15 -117.94 -0.25 -10.65 16 5 C -0.32 -8.66 9.36 -14.93 -0.14 -8.80 16 6 H 0.11 3.30 7.91 -52.49 -0.42 2.88 16 7 C 0.06 1.61 5.26 -17.47 -0.09 1.52 16 8 N -0.86 -23.61 13.96 55.50 0.77 -22.84 16 9 Si 0.86 18.16 25.05 -169.99 -4.26 13.91 16 10 H -0.27 -5.17 6.69 56.52 0.38 -4.79 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 13 C 0.48 10.17 7.56 -10.99 -0.08 10.09 16 14 O -0.55 -13.86 15.85 5.54 0.09 -13.77 16 15 C -0.14 -2.23 4.07 -27.89 -0.11 -2.34 16 16 C -0.09 -1.35 3.97 -26.73 -0.11 -1.46 16 17 C -0.08 -0.99 2.35 -90.54 -0.21 -1.21 16 18 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.12 -1.23 5.29 -26.60 -0.14 -1.37 16 20 C -0.12 -1.08 6.09 -26.65 -0.16 -1.25 16 21 C 0.06 0.52 6.55 -3.83 -0.03 0.50 16 22 N -0.69 -7.10 6.85 -113.81 -0.78 -7.88 16 23 C 0.06 0.68 5.57 -3.84 -0.02 0.65 16 24 H 0.11 2.10 3.61 -51.93 -0.19 1.91 16 25 H 0.11 1.45 6.70 -51.93 -0.35 1.11 16 26 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.09 1.12 7.42 -51.92 -0.39 0.74 16 28 H 0.08 1.15 5.93 -51.93 -0.31 0.84 16 29 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 30 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.34 3.01 8.90 -39.29 -0.35 2.66 16 38 H 0.08 0.91 6.62 -51.93 -0.34 0.56 16 39 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.67 315.37 -6.05 -36.72 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.72 Total: 4.76 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.44 Total: 3.06 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.52 Total: -49.43 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.26 Total: 13.91 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.67 -6.05 -36.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043588003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.057 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds