Wall clock time and date at job start Mon Mar 30 2020 04:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47188 * 283.87035 * 3 2 1 5 5 C 1.37098 * 119.99967 * 263.80246 * 4 3 2 6 6 H 1.08000 * 120.00049 * 142.48091 * 5 4 3 7 7 C 1.38947 * 120.00027 * 322.47157 * 5 4 3 8 8 N 1.31409 * 120.00047 * 157.59328 * 7 5 4 9 9 Si 1.86805 * 120.00129 * 337.59716 * 7 5 4 10 10 H 1.48499 * 109.47198 * 95.70142 * 9 7 5 11 11 H 1.48497 * 109.47104 * 215.70360 * 9 7 5 12 12 H 1.48500 * 109.46674 * 335.70343 * 9 7 5 13 13 C 1.34773 * 119.99915 * 83.79754 * 4 3 2 14 14 O 1.21298 * 119.99946 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00318 * 359.97438 * 13 4 3 16 16 C 1.53000 * 109.47468 * 179.97438 * 15 13 4 17 17 C 1.52998 * 109.47121 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.53448 * 54.90323 * 17 16 15 19 19 C 1.53121 * 109.50117 * 175.00267 * 17 16 15 20 20 C 1.53129 * 109.15826 * 177.59722 * 19 17 16 21 21 C 1.53031 * 109.27843 * 302.34426 * 20 19 17 22 22 N 1.46858 * 109.52310 * 59.18011 * 21 20 19 23 23 C 1.46838 * 111.19848 * 298.25685 * 22 21 20 24 24 H 1.09002 * 109.47000 * 163.87267 * 3 2 1 25 25 H 1.08996 * 109.47396 * 43.87615 * 3 2 1 26 26 H 0.97009 * 120.00106 * 180.02562 * 8 7 5 27 27 H 1.09008 * 109.46715 * 59.99999 * 15 13 4 28 28 H 1.09004 * 109.47597 * 300.00594 * 15 13 4 29 29 H 1.09003 * 109.46504 * 60.00687 * 16 15 13 30 30 H 1.08997 * 109.47376 * 300.00308 * 16 15 13 31 31 H 1.08994 * 109.52175 * 57.69391 * 19 17 16 32 32 H 1.08998 * 109.52026 * 297.49926 * 19 17 16 33 33 H 1.08995 * 109.50179 * 62.28763 * 20 19 17 34 34 H 1.09000 * 109.49875 * 182.36574 * 20 19 17 35 35 H 1.09001 * 109.46607 * 179.19266 * 21 20 19 36 36 H 1.09003 * 109.46935 * 299.18048 * 21 20 19 37 37 H 1.00901 * 110.99534 * 174.16062 * 22 21 20 38 38 H 1.09004 * 109.46646 * 181.75473 * 23 22 21 39 39 H 1.09008 * 109.46587 * 301.72889 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3302 1.3409 5 6 3.4454 0.6712 2.2098 6 1 3.2255 0.5735 3.2627 7 6 4.0820 1.8117 1.7359 8 7 4.0285 2.9287 2.4260 9 14 5.0139 1.7572 0.1178 10 1 4.1345 2.2416 -0.9764 11 1 6.2150 2.6255 0.2088 12 1 5.4327 0.3609 -0.1652 13 6 3.2028 -1.6191 1.7203 14 8 3.6068 -1.8930 2.8308 15 6 2.8186 -2.7198 0.7655 16 6 3.0329 -4.0769 1.4388 17 6 2.6435 -5.1945 0.4691 18 1 3.1975 -5.0782 -0.4624 19 6 2.9742 -6.5523 1.0947 20 6 2.5266 -7.6661 0.1438 21 6 1.0284 -7.5223 -0.1330 22 7 0.7639 -6.2075 -0.7314 23 6 1.1418 -5.1223 0.1827 24 1 2.9709 0.9881 -0.2855 25 1 2.9717 -0.7399 -0.7122 26 1 4.4727 3.7251 2.0950 27 1 3.4377 -2.6569 -0.1295 28 1 1.7695 -2.6122 0.4899 29 1 2.4141 -4.1401 2.3339 30 1 4.0821 -4.1844 1.7140 31 1 2.4505 -6.6526 2.0453 32 1 4.0491 -6.6249 1.2603 33 1 3.0788 -7.5888 -0.7927 34 1 2.7212 -8.6358 0.6021 35 1 0.7094 -8.3052 -0.8210 36 1 0.4758 -7.6132 0.8022 37 1 -0.2022 -6.1252 -1.0106 38 1 0.9053 -4.1622 -0.2759 39 1 0.5888 -5.2248 1.1165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043588003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:33 Heat of formation + Delta-G solvation = -31.686973 kcal Electronic energy + Delta-G solvation = -20270.136744 eV Core-core repulsion = 17211.663244 eV Total energy + Delta-G solvation = -3058.473500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93573 -39.63423 -37.90679 -36.49938 -35.08511 -34.13733 -32.71764 -30.56183 -29.33338 -27.26762 -25.06378 -24.60353 -22.21081 -20.61428 -20.52071 -20.20133 -18.46138 -17.89003 -17.32208 -17.04133 -16.51381 -15.74074 -15.51491 -15.33746 -15.18143 -14.83871 -14.66287 -14.37899 -14.29876 -14.06617 -13.82875 -13.57689 -13.49031 -13.17884 -12.97997 -12.66898 -12.59843 -12.15329 -12.07092 -11.80905 -11.75262 -11.50639 -11.22917 -11.09713 -11.05129 -10.43381 -9.94918 -9.39216 -8.48123 -6.17163 1.27024 1.41244 1.47526 1.55502 1.73403 1.91179 2.24191 2.74764 2.85656 3.19610 3.29790 3.75303 3.81326 3.93533 4.04782 4.13208 4.18398 4.26932 4.36052 4.43161 4.52872 4.59619 4.70067 4.74667 4.84811 4.95721 5.00890 5.04783 5.15560 5.21271 5.34857 5.39526 5.50801 5.57689 6.05115 6.09454 6.43533 6.50366 6.51684 6.91153 7.20519 7.77467 8.68912 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.004870 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.803409 B = 5747.670825 C = 6131.629856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.220 3.780 3 C 0.177 3.823 4 N -0.476 5.476 5 C -0.345 4.345 6 H 0.040 0.960 7 C 0.011 3.989 8 N -0.910 5.910 9 Si 0.932 3.068 10 H -0.226 1.226 11 H -0.289 1.289 12 H -0.229 1.229 13 C 0.468 3.532 14 O -0.600 6.600 15 C -0.132 4.132 16 C -0.089 4.089 17 C -0.075 4.075 18 H 0.090 0.910 19 C -0.119 4.119 20 C -0.114 4.114 21 C 0.054 3.946 22 N -0.693 5.693 23 C 0.060 3.940 24 H 0.115 0.885 25 H 0.171 0.829 26 H 0.282 0.718 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.349 0.651 38 H 0.077 0.923 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -17.529 -13.090 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.099 4.099 3 C 0.052 3.948 4 N -0.199 5.199 5 C -0.473 4.473 6 H 0.058 0.942 7 C -0.192 4.192 8 N -0.546 5.546 9 Si 0.752 3.248 10 H -0.151 1.151 11 H -0.215 1.215 12 H -0.152 1.152 13 C 0.260 3.740 14 O -0.482 6.482 15 C -0.172 4.172 16 C -0.128 4.128 17 C -0.094 4.094 18 H 0.108 0.892 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.075 4.075 22 N -0.324 5.324 23 C -0.070 4.070 24 H 0.132 0.868 25 H 0.188 0.812 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.167 0.833 38 H 0.095 0.905 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.066 -17.462 -12.815 21.758 hybrid contribution -0.066 0.863 1.215 1.492 sum -2.132 -16.599 -11.599 20.362 Atomic orbital electron populations 1.81078 1.14062 1.10437 1.09097 1.30179 0.95892 0.91742 0.92039 1.19944 0.80253 1.06617 0.88033 1.43708 1.57943 1.05169 1.13084 1.18585 1.40518 0.97058 0.91111 0.94220 1.26303 0.96048 0.93320 1.03486 1.69896 1.40823 1.00955 1.42972 0.86072 0.79107 0.81153 0.78455 1.15074 1.21548 1.15167 1.21549 0.79446 0.83899 0.89142 1.90555 1.49868 1.83157 1.24654 1.21830 1.03864 0.92434 0.99043 1.21253 1.01815 0.92091 0.97609 1.21141 0.95628 0.93861 0.98774 0.89211 1.21642 1.01466 0.94285 0.98266 1.21574 0.95432 0.98333 0.99806 1.22004 0.96702 0.91193 0.97648 1.60290 1.27620 1.02307 1.42194 1.22012 0.95753 0.95053 0.94166 0.86777 0.81184 0.90882 0.85395 0.88836 0.93845 0.91789 0.93213 0.91264 0.91037 0.90439 0.89478 0.95880 0.83282 0.90498 0.96480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.89 18.54 20.01 0.37 -17.52 16 2 C 0.22 7.69 15.00 89.44 1.34 9.03 16 3 C 0.18 5.71 4.27 84.58 0.36 6.07 16 4 N -0.48 -20.88 2.15 -645.43 -1.39 -22.27 16 5 C -0.35 -19.16 9.36 84.04 0.79 -18.38 16 6 H 0.04 2.67 7.91 -2.91 -0.02 2.64 16 7 C 0.01 0.58 5.26 84.93 0.45 1.03 16 8 N -0.91 -52.10 13.96 21.66 0.30 -51.79 16 9 Si 0.93 35.56 25.05 68.60 1.72 37.28 16 10 H -0.23 -7.12 6.69 99.48 0.67 -6.45 16 11 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.23 -7.78 7.11 99.48 0.71 -7.07 16 13 C 0.47 19.86 7.56 87.66 0.66 20.52 16 14 O -0.60 -31.60 15.85 -3.08 -0.05 -31.65 16 15 C -0.13 -3.72 4.07 29.85 0.12 -3.60 16 16 C -0.09 -2.44 3.97 30.59 0.12 -2.32 16 17 C -0.08 -1.58 2.35 -10.74 -0.03 -1.60 16 18 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 19 C -0.12 -2.30 5.29 30.68 0.16 -2.13 16 20 C -0.11 -1.79 6.09 30.65 0.19 -1.60 16 21 C 0.05 0.85 6.55 86.32 0.57 1.41 16 22 N -0.69 -12.29 6.85 -513.98 -3.52 -15.81 16 23 C 0.06 1.24 5.57 86.33 0.48 1.72 16 24 H 0.11 3.72 3.61 -2.39 -0.01 3.72 16 25 H 0.17 3.40 6.70 -2.39 -0.02 3.38 16 26 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 27 H 0.13 2.60 7.42 -2.38 -0.02 2.58 16 28 H 0.09 2.43 5.93 -2.38 -0.01 2.41 16 29 H 0.04 1.38 8.10 -2.39 -0.02 1.36 16 30 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.35 5.25 8.90 -89.69 -0.80 4.46 16 38 H 0.08 1.58 6.62 -2.39 -0.02 1.57 16 39 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 Total: -1.00 -72.91 315.37 2.87 -70.04 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.22 Total: 21.58 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.21 Total: 10.14 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.24 Total: -107.39 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.05 Total: -31.65 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 1.72 Total: 37.28 kcal Total: -72.91 2.87 -70.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043588003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.356 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds