Wall clock time and date at job start Mon Mar 30 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 126.28972 * 2 1 4 4 O 1.21294 * 110.25128 * 180.02562 * 3 2 1 5 5 C 1.33649 * 109.81559 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.55277 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.50016 * 180.10225 * 6 5 4 8 8 C 1.53126 * 109.50262 * 60.02777 * 6 5 4 9 9 C 1.53118 * 109.15996 * 182.36561 * 8 6 5 10 10 C 1.53037 * 109.28259 * 57.65278 * 9 8 6 11 11 N 1.46848 * 109.52075 * 300.82106 * 10 9 8 12 12 C 1.46899 * 110.99996 * 185.83866 * 11 10 9 13 13 H 1.09001 * 109.46901 * 186.04724 * 12 11 10 14 14 C 1.53006 * 109.47163 * 306.04461 * 12 11 10 15 15 C 1.50698 * 109.47365 * 66.04710 * 12 11 10 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47245 * 89.99579 * 19 17 15 21 21 H 1.48501 * 109.47356 * 209.99508 * 19 17 15 22 22 H 1.48499 * 109.47321 * 329.99647 * 19 17 15 23 23 C 1.46846 * 111.19945 * 61.74077 * 11 10 9 24 24 N 1.31134 * 106.89151 * 0.22591 * 5 4 3 25 25 H 1.09004 * 109.47367 * 89.97688 * 1 2 3 26 26 H 1.09000 * 109.47080 * 209.97447 * 1 2 3 27 27 H 1.08995 * 109.47286 * 329.97443 * 1 2 3 28 28 H 1.09002 * 109.52343 * 62.45818 * 8 6 5 29 29 H 1.09006 * 109.52149 * 302.26795 * 8 6 5 30 30 H 1.09003 * 109.49979 * 297.70582 * 9 8 6 31 31 H 1.09005 * 109.49922 * 177.59584 * 9 8 6 32 32 H 1.08998 * 109.46455 * 180.80793 * 10 9 8 33 33 H 1.09000 * 109.45396 * 60.82576 * 10 9 8 34 34 H 1.09001 * 109.47002 * 59.99764 * 14 12 11 35 35 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.47050 * 300.00030 * 14 12 11 37 37 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 38 38 H 1.09008 * 109.46406 * 58.27132 * 23 11 10 39 39 H 1.09002 * 109.46695 * 178.24157 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 -0.0005 5 6 3.5299 -0.6213 -0.0015 6 6 4.7969 -1.4371 -0.0029 7 1 4.5466 -2.4980 -0.0052 8 6 5.6180 -1.1084 1.2472 9 6 6.9300 -1.8968 1.2083 10 6 7.6904 -1.5497 -0.0735 11 7 6.8634 -1.8832 -1.2403 12 6 7.6134 -1.6929 -2.4889 13 1 6.9478 -1.8427 -3.3390 14 6 8.1824 -0.2731 -2.5308 15 6 8.7426 -2.6887 -2.5535 16 1 8.8888 -3.3924 -1.7473 17 6 9.5898 -2.7009 -3.6412 18 7 9.4121 -1.8436 -4.6226 19 14 10.9899 -3.9348 -3.7208 20 1 10.5190 -5.1755 -4.3873 21 1 12.1174 -3.3550 -4.4939 22 1 11.4464 -4.2550 -2.3445 23 6 5.6192 -1.1033 -1.2496 24 7 2.3029 -1.0841 -0.0064 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.0529 -1.3850 2.1373 29 1 5.8353 -0.0404 1.2698 30 1 6.7132 -2.9649 1.2251 31 1 7.5378 -1.6346 2.0744 32 1 8.6184 -2.1202 -0.1112 33 1 7.9186 -0.4839 -0.0830 34 1 8.8480 -0.1233 -1.6806 35 1 8.7385 -0.1318 -3.4574 36 1 7.3656 0.4471 -2.4841 37 1 10.0080 -1.8525 -5.3881 38 1 5.8573 -0.0396 -1.2536 39 1 5.0428 -1.3496 -2.1414 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048894756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:33 Heat of formation + Delta-G solvation = 62.702902 kcal Electronic energy + Delta-G solvation = -20577.169153 eV Core-core repulsion = 17522.788705 eV Total energy + Delta-G solvation = -3054.380448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.53388 -38.83834 -36.05024 -34.97170 -33.03976 -31.88429 -30.42025 -29.09143 -28.26052 -25.29965 -24.40392 -23.58898 -23.19987 -21.56859 -20.17037 -18.79269 -18.00991 -17.31905 -16.17382 -15.65458 -14.98233 -14.47583 -14.24062 -13.97026 -13.75121 -13.66504 -13.59740 -13.08421 -12.75374 -12.47109 -12.30082 -11.98675 -11.66326 -11.45940 -11.20518 -11.01323 -10.93891 -10.85243 -10.72243 -10.43341 -10.34230 -10.30180 -10.00138 -9.90591 -9.53773 -8.91754 -8.39645 -7.24695 -6.02631 -4.06572 1.18110 2.22931 2.87569 3.30871 3.37523 3.40185 3.60461 4.01836 4.39908 4.74216 4.89448 4.92836 5.11934 5.19959 5.24212 5.29050 5.30730 5.53970 5.58899 5.63874 5.80575 5.85951 5.95873 6.06619 6.13438 6.14224 6.20030 6.30534 6.62796 6.66262 6.79934 6.83772 7.08964 7.41472 7.68106 7.80560 8.08570 8.19874 8.33079 8.53118 8.99136 9.58631 11.04492 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.004426 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.384304 B = 6324.426958 C = 6630.364495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.393 5.393 4 O 0.076 5.924 5 C 0.206 3.794 6 C 0.006 3.994 7 H 0.123 0.877 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.057 3.943 11 N -0.526 5.526 12 C 0.212 3.788 13 H 0.040 0.960 14 C -0.173 4.173 15 C -0.499 4.499 16 H 0.064 0.936 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.061 3.939 24 N -0.488 5.488 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.029 0.971 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.007 0.993 37 H 0.260 0.740 38 H 0.037 0.963 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 2.939 10.487 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 N -0.103 5.103 4 O 0.019 5.981 5 C -0.014 4.014 6 C -0.015 4.015 7 H 0.141 0.859 8 C -0.151 4.151 9 C -0.153 4.153 10 C -0.071 4.071 11 N -0.250 5.250 12 C 0.107 3.893 13 H 0.058 0.942 14 C -0.232 4.232 15 C -0.537 4.537 16 H 0.082 0.918 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.069 4.069 24 N -0.222 5.222 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.892 2.999 10.326 16.033 hybrid contribution 1.043 0.280 -0.303 1.121 sum -10.850 3.279 10.024 15.131 Atomic orbital electron populations 1.20099 0.83148 1.04392 1.04199 1.25904 1.00532 0.83827 1.00776 1.74618 0.89539 1.24108 1.22019 1.85280 1.22108 1.25068 1.65621 1.29030 0.96908 0.81819 0.93685 1.20094 0.84874 0.98057 0.98498 0.85904 1.21663 0.96828 1.01247 0.95354 1.21632 0.94829 1.00607 0.98245 1.22036 0.97166 0.98824 0.89107 1.62240 1.04338 1.53745 1.04679 1.19314 0.92434 0.92349 0.85252 0.94250 1.22413 0.99193 0.98213 1.03368 1.21079 1.11377 1.16371 1.04908 0.91809 1.24928 0.97854 0.95904 0.95610 1.69891 1.38641 1.36077 1.08756 0.86512 0.81644 0.81279 0.78037 1.20712 1.21432 1.19912 1.21994 0.93280 0.96706 0.94938 1.71938 0.99718 1.29276 1.21236 0.89423 0.89149 0.89719 0.91732 0.91431 0.90955 0.91588 0.89456 0.95306 0.94891 0.89295 0.97413 0.92992 0.94531 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.16 2.25 8.22 -156.37 -1.28 0.96 16 3 N -0.39 -6.01 12.16 30.90 0.38 -5.63 16 4 O 0.08 1.18 11.31 18.09 0.20 1.38 16 5 C 0.21 3.07 7.03 -13.05 -0.09 2.98 16 6 C 0.01 0.08 2.82 -91.69 -0.26 -0.18 16 7 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 8 C -0.11 -1.43 5.27 -26.61 -0.14 -1.57 16 9 C -0.12 -1.57 6.09 -26.65 -0.16 -1.73 16 10 C 0.06 1.00 4.54 -3.83 -0.02 0.99 16 11 N -0.53 -10.44 4.59 -228.08 -1.05 -11.48 16 12 C 0.21 5.10 2.30 -68.86 -0.16 4.94 16 13 H 0.04 1.05 7.98 -51.93 -0.41 0.64 16 14 C -0.17 -4.03 8.22 37.16 0.31 -3.72 16 15 C -0.50 -13.08 7.88 -34.44 -0.27 -13.35 16 16 H 0.06 1.67 7.14 -52.48 -0.37 1.29 16 17 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 18 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.06 1.05 4.40 -3.84 -0.02 1.03 16 24 N -0.49 -7.40 11.55 -9.87 -0.11 -7.51 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.69 6.72 -51.93 -0.35 1.34 16 33 H 0.03 0.52 6.58 -51.93 -0.34 0.17 16 34 H 0.03 0.73 6.46 -51.93 -0.34 0.40 16 35 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 36 H 0.01 0.15 6.82 -51.93 -0.35 -0.20 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.04 0.65 6.88 -51.92 -0.36 0.29 16 39 H 0.07 1.31 8.01 -51.93 -0.42 0.90 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -28.63 310.48 -7.88 -36.51 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.77 Total: -1.11 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.81 Total: -8.35 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.16 Total: -48.92 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.20 Total: 1.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.63 -7.88 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048894756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.217 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds