Wall clock time and date at job start Mon Mar 30 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 126.28972 * 2 1 4 4 O 1.21294 * 110.25128 * 180.02562 * 3 2 1 5 5 C 1.33649 * 109.81559 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.55277 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.50016 * 180.10225 * 6 5 4 8 8 C 1.53126 * 109.50262 * 60.02777 * 6 5 4 9 9 C 1.53118 * 109.15996 * 182.36561 * 8 6 5 10 10 C 1.53037 * 109.28259 * 57.65278 * 9 8 6 11 11 N 1.46848 * 109.52075 * 300.82106 * 10 9 8 12 12 C 1.46899 * 110.99996 * 185.83866 * 11 10 9 13 13 H 1.09001 * 109.46901 * 186.04724 * 12 11 10 14 14 C 1.53006 * 109.47163 * 306.04461 * 12 11 10 15 15 C 1.50698 * 109.47365 * 66.04710 * 12 11 10 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47245 * 89.99579 * 19 17 15 21 21 H 1.48501 * 109.47356 * 209.99508 * 19 17 15 22 22 H 1.48499 * 109.47321 * 329.99647 * 19 17 15 23 23 C 1.46846 * 111.19945 * 61.74077 * 11 10 9 24 24 N 1.31134 * 106.89151 * 0.22591 * 5 4 3 25 25 H 1.09004 * 109.47367 * 89.97688 * 1 2 3 26 26 H 1.09000 * 109.47080 * 209.97447 * 1 2 3 27 27 H 1.08995 * 109.47286 * 329.97443 * 1 2 3 28 28 H 1.09002 * 109.52343 * 62.45818 * 8 6 5 29 29 H 1.09006 * 109.52149 * 302.26795 * 8 6 5 30 30 H 1.09003 * 109.49979 * 297.70582 * 9 8 6 31 31 H 1.09005 * 109.49922 * 177.59584 * 9 8 6 32 32 H 1.08998 * 109.46455 * 180.80793 * 10 9 8 33 33 H 1.09000 * 109.45396 * 60.82576 * 10 9 8 34 34 H 1.09001 * 109.47002 * 59.99764 * 14 12 11 35 35 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.47050 * 300.00030 * 14 12 11 37 37 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 38 38 H 1.09008 * 109.46406 * 58.27132 * 23 11 10 39 39 H 1.09002 * 109.46695 * 178.24157 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 -0.0005 5 6 3.5299 -0.6213 -0.0015 6 6 4.7969 -1.4371 -0.0029 7 1 4.5466 -2.4980 -0.0052 8 6 5.6180 -1.1084 1.2472 9 6 6.9300 -1.8968 1.2083 10 6 7.6904 -1.5497 -0.0735 11 7 6.8634 -1.8832 -1.2403 12 6 7.6134 -1.6929 -2.4889 13 1 6.9478 -1.8427 -3.3390 14 6 8.1824 -0.2731 -2.5308 15 6 8.7426 -2.6887 -2.5535 16 1 8.8888 -3.3924 -1.7473 17 6 9.5898 -2.7009 -3.6412 18 7 9.4121 -1.8436 -4.6226 19 14 10.9899 -3.9348 -3.7208 20 1 10.5190 -5.1755 -4.3873 21 1 12.1174 -3.3550 -4.4939 22 1 11.4464 -4.2550 -2.3445 23 6 5.6192 -1.1033 -1.2496 24 7 2.3029 -1.0841 -0.0064 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 5.0529 -1.3850 2.1373 29 1 5.8353 -0.0404 1.2698 30 1 6.7132 -2.9649 1.2251 31 1 7.5378 -1.6346 2.0744 32 1 8.6184 -2.1202 -0.1112 33 1 7.9186 -0.4839 -0.0830 34 1 8.8480 -0.1233 -1.6806 35 1 8.7385 -0.1318 -3.4574 36 1 7.3656 0.4471 -2.4841 37 1 10.0080 -1.8525 -5.3881 38 1 5.8573 -0.0396 -1.2536 39 1 5.0428 -1.3496 -2.1414 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048894756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:33 Heat of formation + Delta-G solvation = 43.559635 kcal Electronic energy + Delta-G solvation = -20577.999267 eV Core-core repulsion = 17522.788705 eV Total energy + Delta-G solvation = -3055.210563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.65278 -40.26718 -37.16861 -36.50520 -34.50544 -33.46312 -31.61814 -30.14876 -29.86280 -27.30957 -25.67245 -25.01035 -24.37945 -22.85740 -21.63842 -20.19779 -19.15264 -18.53611 -18.05550 -17.17899 -16.36671 -16.05462 -15.63403 -15.22984 -15.05124 -15.03300 -14.48217 -14.35610 -14.01312 -13.87174 -13.57934 -13.25733 -13.20827 -12.89054 -12.67257 -12.61080 -12.52438 -12.30631 -12.19926 -12.05198 -11.94961 -11.64409 -11.55250 -11.29214 -10.90261 -10.77594 -10.45259 -8.87688 -8.07611 -6.18112 0.03869 1.14559 1.46225 1.47278 1.56986 1.72819 2.45075 2.57376 3.02765 3.22287 3.39359 3.72512 3.76640 3.91486 4.18332 4.32632 4.36088 4.51736 4.57223 4.60951 4.67291 4.70275 4.76588 4.79972 4.86895 4.90864 4.97028 5.04080 5.09045 5.12869 5.16995 5.30071 5.49675 5.56557 5.73900 5.82075 6.23586 6.50225 6.71597 6.95268 7.07937 7.51184 8.98699 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.004426 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.384304 B = 6324.426958 C = 6630.364495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.412 5.412 4 O 0.062 5.938 5 C 0.207 3.793 6 C 0.017 3.983 7 H 0.126 0.874 8 C -0.106 4.106 9 C -0.105 4.105 10 C 0.056 3.944 11 N -0.532 5.532 12 C 0.216 3.784 13 H 0.004 0.996 14 C -0.158 4.158 15 C -0.509 4.509 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.959 3.041 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.065 3.935 24 N -0.502 5.502 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.260 0.740 38 H 0.032 0.968 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 2.499 12.402 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 N -0.125 5.125 4 O 0.009 5.991 5 C -0.014 4.014 6 C -0.004 4.004 7 H 0.144 0.856 8 C -0.145 4.145 9 C -0.142 4.142 10 C -0.072 4.072 11 N -0.255 5.255 12 C 0.108 3.892 13 H 0.021 0.979 14 C -0.217 4.217 15 C -0.547 4.547 16 H 0.080 0.920 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.785 3.215 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.065 4.065 24 N -0.236 5.236 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.668 2.558 12.265 17.817 hybrid contribution 1.208 0.434 -0.914 1.576 sum -11.459 2.993 11.351 16.405 Atomic orbital electron populations 1.20371 0.79976 1.05993 1.05553 1.26752 1.02295 0.82962 0.98886 1.74620 0.89599 1.24852 1.23406 1.85259 1.22506 1.25219 1.66103 1.29036 0.97044 0.81791 0.93549 1.19959 0.84540 0.98136 0.97725 0.85570 1.21661 0.96206 1.01327 0.95265 1.21569 0.95078 1.00935 0.96642 1.22082 0.96817 0.98211 0.90089 1.62118 1.04969 1.54673 1.03778 1.19059 0.91644 0.92223 0.86228 0.97855 1.22206 0.99238 0.98348 1.01932 1.21358 1.11941 1.16644 1.04782 0.91990 1.25693 1.00218 0.97570 0.95359 1.70029 1.39559 1.37535 1.09241 0.85537 0.78709 0.78958 0.78299 1.20522 1.21348 1.18919 1.21931 0.92381 0.95996 0.96203 1.71965 0.99978 1.29984 1.21715 0.88034 0.87608 0.88051 0.89138 0.91138 0.90663 0.88834 0.91500 0.95688 0.94381 0.92160 0.96095 0.93119 0.94990 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.51 71.24 0.75 -0.19 16 2 C 0.16 4.24 8.22 138.46 1.14 5.38 16 3 N -0.41 -12.11 12.16 -60.32 -0.73 -12.84 16 4 O 0.06 1.88 11.31 74.78 0.85 2.72 16 5 C 0.21 5.89 7.03 88.38 0.62 6.51 16 6 C 0.02 0.47 2.82 -11.49 -0.03 0.43 16 7 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 8 C -0.11 -2.41 5.27 30.68 0.16 -2.25 16 9 C -0.10 -2.57 6.09 30.65 0.19 -2.38 16 10 C 0.06 1.92 4.54 86.33 0.39 2.31 16 11 N -0.53 -21.19 4.59 -875.50 -4.02 -25.21 16 12 C 0.22 10.64 2.30 44.17 0.10 10.74 16 13 H 0.00 0.20 7.98 -2.39 -0.02 0.18 16 14 C -0.16 -7.53 8.22 71.98 0.59 -6.94 16 15 C -0.51 -27.09 7.88 25.60 0.20 -26.89 16 16 H 0.06 3.25 7.14 -2.91 -0.02 3.23 16 17 C 0.01 0.53 5.30 84.65 0.45 0.98 16 18 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 19 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 C 0.06 2.23 4.40 86.33 0.38 2.61 16 24 N -0.50 -14.44 11.55 -303.20 -3.50 -17.94 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 2.57 6.72 -2.39 -0.02 2.55 16 33 H 0.02 0.87 6.58 -2.39 -0.02 0.86 16 34 H 0.04 1.72 6.46 -2.39 -0.02 1.71 16 35 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 36 H 0.02 0.89 6.82 -2.39 -0.02 0.88 16 37 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 38 H 0.03 1.13 6.88 -2.38 -0.02 1.11 16 39 H 0.06 2.15 8.01 -2.39 -0.02 2.13 16 Total: -1.00 -62.31 310.48 0.84 -61.48 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.04 Total: 8.97 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.94 Total: -9.69 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -8.01 Total: -108.44 kcal Atomic # 8 Polarization: 1.88 SS G_CDS: 0.85 Total: 2.72 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -62.31 0.84 -61.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048894756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.035 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds