Wall clock time and date at job start Mon Mar 30 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29948 * 126.28588 * 2 1 4 4 O 1.21307 * 110.24829 * 179.72688 * 3 2 1 5 5 C 1.33645 * 109.80760 * 0.46900 * 4 3 2 6 6 C 1.50700 * 126.54754 * 179.80247 * 5 4 3 7 7 H 1.08993 * 109.50639 * 179.76270 * 6 5 4 8 8 C 1.53121 * 109.50207 * 299.88407 * 6 5 4 9 9 C 1.53121 * 109.16123 * 177.59511 * 8 6 5 10 10 C 1.53036 * 109.28007 * 302.34577 * 9 8 6 11 11 N 1.46850 * 109.52589 * 59.17663 * 10 9 8 12 12 C 1.46894 * 111.00496 * 174.16429 * 11 10 9 13 13 H 1.09002 * 109.47104 * 64.20760 * 12 11 10 14 14 C 1.52997 * 109.47515 * 184.21028 * 12 11 10 15 15 C 1.50699 * 109.46922 * 304.21092 * 12 11 10 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00161 * 179.97438 * 15 12 11 18 18 N 1.31509 * 119.99895 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00268 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46809 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00386 * 19 17 15 22 22 H 1.48497 * 109.47378 * 240.00673 * 19 17 15 23 23 C 1.46848 * 111.19572 * 298.26430 * 11 10 9 24 24 N 1.31129 * 106.89996 * 359.53542 * 5 4 3 25 25 H 1.09002 * 109.47079 * 269.97514 * 1 2 3 26 26 H 1.09000 * 109.47496 * 29.97215 * 1 2 3 27 27 H 1.09003 * 109.47270 * 149.97826 * 1 2 3 28 28 H 1.09004 * 109.52088 * 297.49609 * 8 6 5 29 29 H 1.08995 * 109.52630 * 57.62815 * 8 6 5 30 30 H 1.09005 * 109.50411 * 62.28478 * 9 8 6 31 31 H 1.08996 * 109.50683 * 182.36027 * 9 8 6 32 32 H 1.09001 * 109.46412 * 299.16309 * 10 9 8 33 33 H 1.08993 * 109.46636 * 179.19597 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 35 35 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 36 36 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 37 37 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.46089 * 181.75871 * 23 11 10 39 39 H 1.09009 * 109.46158 * 301.73172 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0054 5 6 3.5298 -0.6212 -0.0008 6 6 4.7969 -1.4370 -0.0013 7 1 4.5467 -2.4978 -0.0028 8 6 5.6193 -1.1031 -1.2490 9 6 6.9318 -1.8909 -1.2115 10 6 7.6904 -1.5482 0.0727 11 7 6.8621 -1.8866 1.2371 12 6 7.6103 -1.7005 2.4874 13 1 7.8591 -0.6461 2.6085 14 6 6.7533 -2.1611 3.6682 15 6 8.8784 -2.5134 2.4397 16 1 9.1055 -3.1091 1.5679 17 6 9.7487 -2.4967 3.5090 18 7 9.4719 -1.7718 4.5707 19 14 11.3201 -3.5050 3.4501 20 1 11.3964 -4.2275 2.1550 21 1 12.4922 -2.6029 3.5830 22 1 11.3212 -4.4856 4.5653 23 6 5.6174 -1.1074 1.2477 24 7 2.3029 -1.0841 -0.0004 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 5.0556 -1.3767 -2.1409 29 1 5.8351 -0.0348 -1.2679 30 1 6.7157 -2.9591 -1.2325 31 1 7.5402 -1.6258 -2.0761 32 1 7.9182 -0.4824 0.0865 33 1 8.6186 -2.1183 0.1093 34 1 6.5046 -3.2155 3.5471 35 1 5.8362 -1.5731 3.7027 36 1 7.3088 -2.0234 4.5959 37 1 10.0840 -1.7603 5.3232 38 1 5.0401 -1.3574 2.1380 39 1 5.8549 -0.0436 1.2558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048894758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:35 Heat of formation + Delta-G solvation = 63.493162 kcal Electronic energy + Delta-G solvation = -20544.638866 eV Core-core repulsion = 17490.292687 eV Total energy + Delta-G solvation = -3054.346180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.53006 -38.73797 -36.04276 -34.88405 -33.10026 -31.89686 -30.45924 -29.06957 -28.51503 -25.53546 -24.07270 -23.63159 -23.16021 -21.16483 -19.96046 -19.16797 -18.00220 -17.31395 -16.27316 -15.83207 -15.04210 -14.43834 -14.20072 -14.08481 -13.74360 -13.62549 -13.23876 -13.09215 -12.85217 -12.54248 -12.33228 -12.10279 -11.70170 -11.39734 -11.15991 -11.00380 -10.92228 -10.68498 -10.65071 -10.52035 -10.38341 -10.13149 -9.99011 -9.90235 -9.51863 -8.87392 -8.45379 -7.27421 -6.04211 -4.09084 1.18283 2.23154 2.87803 3.28255 3.36556 3.40050 3.60633 4.02016 4.38248 4.73438 4.90187 4.92920 5.10485 5.20001 5.24367 5.28435 5.30739 5.54368 5.59022 5.64348 5.81033 5.86168 5.96233 6.07406 6.13765 6.14416 6.20241 6.31386 6.66445 6.70757 6.82648 7.02375 7.11348 7.47058 7.67284 7.79166 8.14394 8.20024 8.27091 8.52580 8.97198 9.56238 11.02658 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035558 B = 0.004478 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.251251 B = 6251.827527 C = 6719.988373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.393 5.393 4 O 0.076 5.924 5 C 0.206 3.794 6 C 0.006 3.994 7 H 0.123 0.877 8 C -0.113 4.113 9 C -0.114 4.114 10 C 0.058 3.942 11 N -0.528 5.528 12 C 0.213 3.787 13 H 0.000 1.000 14 C -0.134 4.134 15 C -0.504 4.504 16 H 0.066 0.934 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.058 3.942 24 N -0.488 5.488 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.007 0.993 36 H 0.086 0.914 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 2.230 -10.021 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 N -0.103 5.103 4 O 0.019 5.981 5 C -0.014 4.014 6 C -0.015 4.015 7 H 0.141 0.859 8 C -0.151 4.151 9 C -0.152 4.152 10 C -0.070 4.070 11 N -0.254 5.254 12 C 0.108 3.892 13 H 0.018 0.982 14 C -0.192 4.192 15 C -0.543 4.543 16 H 0.084 0.916 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.072 4.072 24 N -0.222 5.222 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.341 2.293 -9.864 15.964 hybrid contribution 1.103 0.359 0.235 1.183 sum -11.239 2.651 -9.628 15.035 Atomic orbital electron populations 1.20100 0.83149 1.04390 1.04200 1.25902 1.00529 0.83831 1.00766 1.74624 0.89533 1.24107 1.22029 1.85283 1.22112 1.25065 1.65627 1.29029 0.96911 0.81823 0.93662 1.20092 0.84871 0.98035 0.98495 0.85920 1.21669 0.96842 1.01245 0.95379 1.21624 0.94806 1.00598 0.98208 1.22043 0.97384 0.98570 0.89037 1.62026 1.04418 1.54169 1.04753 1.19248 0.91266 0.95281 0.83411 0.98196 1.21865 0.96530 0.98570 1.02261 1.21170 1.03171 1.27580 1.02348 0.91618 1.24934 0.98287 0.95607 0.95378 1.69901 1.36793 1.40393 1.06044 0.86466 0.83038 0.79954 0.78105 1.19681 1.21177 1.21046 1.22070 0.93673 0.96199 0.95235 1.71934 0.99711 1.29275 1.21255 0.89419 0.89717 0.89154 0.91749 0.91425 0.90950 0.91549 0.95904 0.88967 0.94502 0.97408 0.89571 0.92998 0.90157 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.00 0.38 -0.16 16 2 C 0.16 2.25 8.22 -156.37 -1.28 0.97 16 3 N -0.39 -6.03 12.16 30.90 0.38 -5.65 16 4 O 0.08 1.18 11.31 18.09 0.20 1.39 16 5 C 0.21 3.09 7.03 -13.06 -0.09 3.00 16 6 C 0.01 0.08 2.82 -91.69 -0.26 -0.17 16 7 H 0.12 1.77 8.14 -51.93 -0.42 1.34 16 8 C -0.11 -1.45 5.27 -26.61 -0.14 -1.59 16 9 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 10 C 0.06 1.03 5.21 -3.83 -0.02 1.01 16 11 N -0.53 -10.59 4.52 -228.08 -1.03 -11.62 16 12 C 0.21 5.18 2.06 -68.87 -0.14 5.04 16 13 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 14 C -0.13 -3.20 8.75 37.16 0.33 -2.87 16 15 C -0.50 -13.21 7.86 -34.44 -0.27 -13.48 16 16 H 0.07 1.70 6.40 -52.48 -0.34 1.37 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.06 1.01 4.48 -3.83 -0.02 0.99 16 24 N -0.49 -7.42 11.55 -9.87 -0.11 -7.53 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 1.80 6.02 -51.93 -0.31 1.49 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.01 0.15 6.28 -51.93 -0.33 -0.17 16 36 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 1.47 6.01 -51.92 -0.31 1.15 16 39 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -28.81 312.11 -7.84 -36.65 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.81 Total: -1.88 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.78 Total: -7.51 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.14 Total: -49.08 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.81 -7.84 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048894758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.146 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds