Wall clock time and date at job start Mon Mar 30 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29948 * 126.28588 * 2 1 4 4 O 1.21307 * 110.24829 * 179.72688 * 3 2 1 5 5 C 1.33645 * 109.80760 * 0.46900 * 4 3 2 6 6 C 1.50700 * 126.54754 * 179.80247 * 5 4 3 7 7 H 1.08993 * 109.50639 * 179.76270 * 6 5 4 8 8 C 1.53121 * 109.50207 * 299.88407 * 6 5 4 9 9 C 1.53121 * 109.16123 * 177.59511 * 8 6 5 10 10 C 1.53036 * 109.28007 * 302.34577 * 9 8 6 11 11 N 1.46850 * 109.52589 * 59.17663 * 10 9 8 12 12 C 1.46894 * 111.00496 * 174.16429 * 11 10 9 13 13 H 1.09002 * 109.47104 * 64.20760 * 12 11 10 14 14 C 1.52997 * 109.47515 * 184.21028 * 12 11 10 15 15 C 1.50699 * 109.46922 * 304.21092 * 12 11 10 16 16 H 1.08003 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00161 * 179.97438 * 15 12 11 18 18 N 1.31509 * 119.99895 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00268 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46809 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00386 * 19 17 15 22 22 H 1.48497 * 109.47378 * 240.00673 * 19 17 15 23 23 C 1.46848 * 111.19572 * 298.26430 * 11 10 9 24 24 N 1.31129 * 106.89996 * 359.53542 * 5 4 3 25 25 H 1.09002 * 109.47079 * 269.97514 * 1 2 3 26 26 H 1.09000 * 109.47496 * 29.97215 * 1 2 3 27 27 H 1.09003 * 109.47270 * 149.97826 * 1 2 3 28 28 H 1.09004 * 109.52088 * 297.49609 * 8 6 5 29 29 H 1.08995 * 109.52630 * 57.62815 * 8 6 5 30 30 H 1.09005 * 109.50411 * 62.28478 * 9 8 6 31 31 H 1.08996 * 109.50683 * 182.36027 * 9 8 6 32 32 H 1.09001 * 109.46412 * 299.16309 * 10 9 8 33 33 H 1.08993 * 109.46636 * 179.19597 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 14 12 11 35 35 H 1.09001 * 109.46832 * 299.99953 * 14 12 11 36 36 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 37 37 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 38 38 H 1.09007 * 109.46089 * 181.75871 * 23 11 10 39 39 H 1.09009 * 109.46158 * 301.73172 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0054 5 6 3.5298 -0.6212 -0.0008 6 6 4.7969 -1.4370 -0.0013 7 1 4.5467 -2.4978 -0.0028 8 6 5.6193 -1.1031 -1.2490 9 6 6.9318 -1.8909 -1.2115 10 6 7.6904 -1.5482 0.0727 11 7 6.8621 -1.8866 1.2371 12 6 7.6103 -1.7005 2.4874 13 1 7.8591 -0.6461 2.6085 14 6 6.7533 -2.1611 3.6682 15 6 8.8784 -2.5134 2.4397 16 1 9.1055 -3.1091 1.5679 17 6 9.7487 -2.4967 3.5090 18 7 9.4719 -1.7718 4.5707 19 14 11.3201 -3.5050 3.4501 20 1 11.3964 -4.2275 2.1550 21 1 12.4922 -2.6029 3.5830 22 1 11.3212 -4.4856 4.5653 23 6 5.6174 -1.1074 1.2477 24 7 2.3029 -1.0841 -0.0004 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 5.0556 -1.3767 -2.1409 29 1 5.8351 -0.0348 -1.2679 30 1 6.7157 -2.9591 -1.2325 31 1 7.5402 -1.6258 -2.0761 32 1 7.9182 -0.4824 0.0865 33 1 8.6186 -2.1183 0.1093 34 1 6.5046 -3.2155 3.5471 35 1 5.8362 -1.5731 3.7027 36 1 7.3088 -2.0234 4.5959 37 1 10.0840 -1.7603 5.3232 38 1 5.0401 -1.3574 2.1380 39 1 5.8549 -0.0436 1.2558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048894758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:35 Heat of formation + Delta-G solvation = 44.263198 kcal Electronic energy + Delta-G solvation = -20545.472740 eV Core-core repulsion = 17490.292687 eV Total energy + Delta-G solvation = -3055.180054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.65270 -40.16811 -37.15940 -36.46450 -34.53327 -33.52331 -31.66761 -30.28444 -29.98513 -27.43646 -25.36083 -25.11152 -24.34625 -22.39348 -21.65201 -20.50026 -19.14816 -18.56373 -18.18103 -17.34898 -16.37718 -16.10561 -15.55709 -15.40085 -15.01070 -14.55286 -14.52134 -14.45552 -14.24680 -13.87042 -13.46971 -13.45953 -13.24408 -12.87686 -12.61991 -12.49718 -12.34140 -12.28403 -12.15048 -12.07337 -12.04305 -11.69155 -11.60712 -11.25930 -10.81074 -10.78035 -10.48890 -8.96582 -8.09147 -6.20609 0.03528 1.14519 1.44322 1.46748 1.57911 1.72618 2.43841 2.56764 3.02627 3.19651 3.36810 3.72134 3.75876 3.90498 4.17742 4.32051 4.34815 4.51218 4.57093 4.57418 4.66911 4.75114 4.77842 4.79910 4.86018 4.95931 5.01735 5.04783 5.09161 5.09861 5.20447 5.33193 5.45737 5.55756 5.74844 5.80301 6.26618 6.39899 6.70821 6.94346 7.07608 7.48721 8.97388 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.035558 B = 0.004478 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.251251 B = 6251.827527 C = 6719.988373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.412 5.412 4 O 0.061 5.939 5 C 0.206 3.794 6 C 0.018 3.982 7 H 0.129 0.871 8 C -0.107 4.107 9 C -0.103 4.103 10 C 0.055 3.945 11 N -0.530 5.530 12 C 0.217 3.783 13 H -0.037 1.037 14 C -0.123 4.123 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.960 3.040 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.061 3.939 24 N -0.501 5.501 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.059 0.941 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 1.484 -11.827 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 N -0.125 5.125 4 O 0.008 5.992 5 C -0.014 4.014 6 C -0.003 4.003 7 H 0.146 0.854 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.073 4.073 11 N -0.255 5.255 12 C 0.110 3.890 13 H -0.020 1.020 14 C -0.181 4.181 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.786 3.214 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.068 4.068 24 N -0.235 5.235 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.327 1.545 -11.694 17.797 hybrid contribution 1.343 0.630 0.806 1.688 sum -11.984 2.175 -10.888 16.337 Atomic orbital electron populations 1.20374 0.79950 1.05993 1.05576 1.26756 1.02296 0.82962 0.98830 1.74630 0.89578 1.24878 1.23434 1.85265 1.22542 1.25262 1.66133 1.29030 0.97056 0.81777 0.93570 1.19957 0.84518 0.98229 0.97607 0.85365 1.21669 0.96249 1.01226 0.95413 1.21552 0.95015 1.01045 0.96413 1.22106 0.97211 0.97670 0.90308 1.61959 1.04983 1.54809 1.03733 1.19037 0.91567 0.92722 0.85694 1.01974 1.21682 0.96811 0.98670 1.00925 1.21460 1.04034 1.27475 1.02293 0.91526 1.25724 1.01366 0.96669 0.95093 1.70036 1.37871 1.41733 1.06642 0.85467 0.79197 0.78421 0.78313 1.18677 1.21008 1.20929 1.22017 0.92745 0.95351 0.96720 1.71962 0.99914 1.29942 1.21690 0.87995 0.88072 0.87588 0.89041 0.91327 0.90424 0.88843 0.96826 0.90924 0.94614 0.95667 0.92212 0.93057 0.91303 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.51 71.24 0.75 -0.18 16 2 C 0.16 4.25 8.22 138.46 1.14 5.39 16 3 N -0.41 -12.16 12.16 -60.30 -0.73 -12.89 16 4 O 0.06 1.85 11.31 74.81 0.85 2.70 16 5 C 0.21 5.90 7.03 88.38 0.62 6.52 16 6 C 0.02 0.48 2.82 -11.49 -0.03 0.45 16 7 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 8 C -0.11 -2.47 5.27 30.68 0.16 -2.31 16 9 C -0.10 -2.56 6.09 30.65 0.19 -2.37 16 10 C 0.05 1.95 5.21 86.33 0.45 2.40 16 11 N -0.53 -21.36 4.52 -875.51 -3.96 -25.32 16 12 C 0.22 10.81 2.06 44.17 0.09 10.91 16 13 H -0.04 -2.10 8.14 -2.39 -0.02 -2.12 16 14 C -0.12 -6.00 8.75 71.98 0.63 -5.37 16 15 C -0.51 -27.39 7.86 25.60 0.20 -27.19 16 16 H 0.07 3.47 6.40 -2.91 -0.02 3.45 16 17 C 0.01 0.53 5.30 84.66 0.45 0.98 16 18 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 19 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 C 0.06 2.13 4.48 86.33 0.39 2.52 16 24 N -0.50 -14.34 11.55 -303.18 -3.50 -17.84 16 25 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 2.85 6.02 -2.39 -0.01 2.83 16 34 H 0.03 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.02 1.09 6.28 -2.39 -0.01 1.08 16 36 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 37 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 38 H 0.07 2.53 6.01 -2.38 -0.01 2.52 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -62.86 312.11 1.00 -61.86 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.04 Total: 7.45 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.03 Total: -8.26 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -7.95 Total: -108.58 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: 0.85 Total: 2.70 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -62.86 1.00 -61.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048894758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.128 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds