Wall clock time and date at job start Mon Mar 30 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47022 * 276.36960 * 3 2 1 5 5 C 1.37096 * 120.00548 * 264.20638 * 4 3 2 6 6 H 1.07996 * 120.00372 * 198.12091 * 5 4 3 7 7 C 1.38950 * 119.99846 * 18.11688 * 5 4 3 8 8 N 1.31424 * 119.99934 * 18.72866 * 7 5 4 9 9 Si 1.86798 * 120.00532 * 198.73046 * 7 5 4 10 10 H 1.48496 * 109.47178 * 85.58473 * 9 7 5 11 11 H 1.48494 * 109.47548 * 205.59057 * 9 7 5 12 12 H 1.48501 * 109.46809 * 325.58814 * 9 7 5 13 13 C 1.34771 * 119.99901 * 84.21320 * 4 3 2 14 14 O 1.21295 * 120.00508 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99918 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47228 * 180.02562 * 15 13 4 17 17 C 1.53001 * 109.47359 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.45473 * 54.98034 * 17 16 15 19 19 C 1.53028 * 109.46343 * 174.94935 * 17 16 15 20 20 C 1.53117 * 109.27937 * 179.19846 * 19 17 16 21 21 C 1.53120 * 109.16286 * 302.34979 * 20 19 17 22 22 C 1.53038 * 109.28080 * 57.64765 * 21 20 19 23 23 N 1.46846 * 109.52551 * 300.82893 * 22 21 20 24 24 H 1.09010 * 109.47125 * 156.37156 * 3 2 1 25 25 H 1.09003 * 109.47266 * 36.37597 * 3 2 1 26 26 H 0.96999 * 119.99866 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47313 * 300.00311 * 15 13 4 28 28 H 1.09001 * 109.46948 * 60.00539 * 15 13 4 29 29 H 1.08998 * 109.47545 * 300.00796 * 16 15 13 30 30 H 1.09001 * 109.46721 * 60.00394 * 16 15 13 31 31 H 1.08999 * 109.50726 * 299.13552 * 19 17 16 32 32 H 1.09003 * 109.50729 * 59.25632 * 19 17 16 33 33 H 1.09004 * 109.52837 * 182.44296 * 20 19 17 34 34 H 1.08999 * 109.57795 * 62.28318 * 20 19 17 35 35 H 1.09004 * 109.49604 * 297.71127 * 21 20 19 36 36 H 1.08998 * 109.50800 * 177.59464 * 21 20 19 37 37 H 1.08992 * 109.46208 * 180.80750 * 22 21 20 38 38 H 1.09007 * 109.44939 * 60.83308 * 22 21 20 39 39 H 1.00902 * 111.00129 * 185.83513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1524 1.3727 5 6 3.4374 0.9544 2.1064 6 1 4.0590 0.8504 2.9833 7 6 2.9832 2.2100 1.7217 8 7 1.9570 2.3165 0.9076 9 14 3.8311 3.7465 2.3616 10 1 4.9907 4.0703 1.4924 11 1 2.8731 4.8810 2.3519 12 1 4.3036 3.5095 3.7493 13 6 3.2106 -1.3812 1.9142 14 8 3.6153 -1.5080 3.0506 15 6 2.8353 -2.5978 1.1079 16 6 3.0562 -3.8559 1.9501 17 6 2.6747 -5.0911 1.1317 18 1 3.2312 -5.0917 0.1944 19 6 3.0135 -6.3541 1.9266 20 6 2.6116 -7.5869 1.1123 21 6 1.1176 -7.5088 0.7863 22 6 0.8337 -6.2123 0.0244 23 7 1.2346 -5.0627 0.8455 24 1 2.9709 0.9424 -0.4119 25 1 2.9717 -0.8266 -0.6095 26 1 1.6397 3.1930 0.6393 27 1 1.7861 -2.5334 0.8199 28 1 3.4555 -2.6459 0.2128 29 1 4.1053 -3.9206 2.2385 30 1 2.4357 -3.8076 2.8449 31 1 4.0848 -6.3826 2.1252 32 1 2.4679 -6.3475 2.8702 33 1 2.8112 -8.4878 1.6926 34 1 3.1855 -7.6158 0.1860 35 1 0.5421 -7.5204 1.7120 36 1 0.8343 -8.3623 0.1703 37 1 -0.2316 -6.1468 -0.1966 38 1 1.3990 -6.2077 -0.9075 39 1 0.9704 -4.1941 0.4052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050939741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:02 Heat of formation + Delta-G solvation = -15.358907 kcal Electronic energy + Delta-G solvation = -20289.620974 eV Core-core repulsion = 17231.855512 eV Total energy + Delta-G solvation = -3057.765462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.22259 -38.42235 -35.81069 -34.40279 -33.52044 -31.86855 -31.79620 -29.51554 -27.41893 -25.57190 -24.10822 -23.09768 -21.06974 -19.66239 -18.90962 -17.87888 -16.83741 -16.36020 -15.85625 -15.34708 -14.69730 -14.29466 -14.24112 -14.05615 -13.70628 -13.27564 -13.12658 -12.96536 -12.85054 -12.38915 -11.90655 -11.86048 -11.58082 -11.45504 -11.29036 -11.16461 -10.96388 -10.80442 -10.64976 -10.48092 -10.43090 -10.33954 -10.23897 -10.15680 -9.24833 -8.56051 -8.35742 -8.02515 -6.47943 -3.99351 3.11644 3.22769 3.26583 3.58035 3.82106 3.99936 4.13145 4.21529 4.66733 4.77568 4.86544 4.90225 4.97750 5.14390 5.22730 5.35802 5.38886 5.48294 5.54491 5.59781 5.72734 5.77909 5.83008 5.90330 5.95416 5.97567 6.08236 6.14098 6.24945 6.35276 6.46762 6.55722 6.71210 7.16305 7.44883 7.48310 7.93071 8.30517 8.75526 9.02768 9.22045 9.76963 10.58026 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033645 B = 0.004562 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.007061 B = 6136.575939 C = 6781.098406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.247 3.753 3 C 0.222 3.778 4 N -0.447 5.447 5 C -0.311 4.311 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.883 5.883 9 Si 0.929 3.071 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.458 3.542 14 O -0.573 6.573 15 C -0.137 4.137 16 C -0.093 4.093 17 C 0.088 3.912 18 H 0.036 0.964 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.118 4.118 22 C 0.058 3.942 23 N -0.687 5.687 24 H 0.129 0.871 25 H 0.081 0.919 26 H 0.273 0.727 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -13.755 -5.680 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.168 5.168 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.522 5.522 9 Si 0.756 3.244 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.247 3.753 14 O -0.455 6.455 15 C -0.178 4.178 16 C -0.132 4.132 17 C -0.021 4.021 18 H 0.054 0.946 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.071 4.071 23 N -0.321 5.321 24 H 0.146 0.854 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.111 -13.940 -4.592 14.719 hybrid contribution 0.902 1.340 -0.740 1.776 sum 2.013 -12.600 -5.332 13.829 Atomic orbital electron populations 1.80899 1.13597 1.12203 1.08723 1.29332 0.95379 0.90166 0.92274 1.18738 0.81596 1.04023 0.86196 1.43655 1.56879 1.05620 1.10606 1.19735 1.29515 0.83283 1.11290 0.87473 1.25279 0.95059 0.99539 0.97417 1.69824 1.21349 1.25450 1.35595 0.85882 0.78791 0.80252 0.79502 1.20146 1.21118 1.19429 1.20164 0.83457 0.84159 0.87530 1.90540 1.50095 1.85871 1.19019 1.21646 1.02032 0.94665 0.99418 1.21349 1.02469 0.90746 0.98594 1.21556 0.87724 0.95580 0.97269 0.94638 1.21614 1.00848 0.93253 0.99309 1.21580 0.96188 0.98155 0.99928 1.21588 0.96617 0.96474 1.00862 1.21886 1.00100 0.91323 0.93841 1.60318 1.16135 1.05346 1.50252 0.85374 0.90142 0.91666 0.90461 0.90464 0.90840 0.90461 0.91597 0.91032 0.92084 0.92509 0.91203 0.92065 0.91058 0.95549 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.16 18.54 42.15 0.78 -10.38 16 2 C 0.25 5.39 12.95 -20.76 -0.27 5.12 16 3 C 0.22 4.35 4.91 -6.83 -0.03 4.32 16 4 N -0.45 -10.36 2.60 -117.93 -0.31 -10.66 16 5 C -0.31 -8.02 9.33 -14.93 -0.14 -8.16 16 6 H 0.11 2.92 7.37 -52.49 -0.39 2.54 16 7 C 0.03 0.74 4.94 -17.46 -0.09 0.65 16 8 N -0.88 -22.27 9.33 55.50 0.52 -21.75 16 9 Si 0.93 19.75 29.59 -169.99 -5.03 14.72 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 13 C 0.46 10.25 7.56 -10.99 -0.08 10.17 16 14 O -0.57 -14.89 15.64 5.54 0.09 -14.80 16 15 C -0.14 -2.28 4.08 -27.88 -0.11 -2.39 16 16 C -0.09 -1.45 4.18 -26.73 -0.11 -1.56 16 17 C 0.09 1.12 2.50 -67.73 -0.17 0.95 16 18 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 19 C -0.11 -1.28 5.37 -26.66 -0.14 -1.43 16 20 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 21 C -0.12 -1.15 6.09 -26.65 -0.16 -1.32 16 22 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 23 N -0.69 -8.88 6.50 -106.76 -0.69 -9.57 16 24 H 0.13 2.59 6.40 -51.92 -0.33 2.26 16 25 H 0.08 1.19 6.68 -51.93 -0.35 0.84 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.08 1.28 6.00 -51.93 -0.31 0.97 16 28 H 0.08 1.07 7.41 -51.93 -0.39 0.69 16 29 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 39 H 0.34 4.56 7.00 -39.29 -0.28 4.29 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -30.17 316.65 -7.19 -37.36 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.82 Total: 4.70 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.50 Total: 5.61 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.30 Total: -52.36 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.17 -7.19 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050939741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.003 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds