Wall clock time and date at job start Mon Mar 30 2020 04:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29949 * 126.28890 * 2 1 4 4 O 1.21300 * 110.24771 * 179.72281 * 3 2 1 5 5 C 1.33638 * 109.81310 * 0.46540 * 4 3 2 6 6 C 1.50698 * 126.55131 * 179.79694 * 5 4 3 7 7 C 1.53124 * 109.52336 * 59.69406 * 6 5 4 8 8 C 1.53037 * 109.28148 * 182.44065 * 7 6 5 9 9 N 1.46844 * 109.52152 * 59.17731 * 8 7 6 10 10 C 1.46906 * 110.99887 * 174.16043 * 9 8 7 11 11 H 1.09000 * 109.47033 * 300.00129 * 10 9 8 12 12 C 1.52997 * 109.46907 * 59.99965 * 10 9 8 13 13 C 1.50699 * 109.47140 * 180.02562 * 10 9 8 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00302 * 179.97438 * 15 13 10 17 17 Si 1.86805 * 119.99832 * 0.02562 * 15 13 10 18 18 H 1.48506 * 109.47310 * 89.99428 * 17 15 13 19 19 H 1.48491 * 109.47296 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.46905 * 329.99956 * 17 15 13 21 21 C 1.46850 * 111.19991 * 298.25708 * 9 8 7 22 22 C 1.53032 * 109.52098 * 61.74469 * 21 9 8 23 23 N 1.31125 * 106.89950 * 359.54012 * 5 4 3 24 24 H 1.08993 * 109.47195 * 269.97974 * 1 2 3 25 25 H 1.09000 * 109.46989 * 29.98010 * 1 2 3 26 26 H 1.08994 * 109.46768 * 149.97905 * 1 2 3 27 27 H 1.09000 * 109.52436 * 179.81841 * 6 5 4 28 28 H 1.08997 * 109.50392 * 62.49487 * 7 6 5 29 29 H 1.09008 * 109.53016 * 302.40048 * 7 6 5 30 30 H 1.08995 * 109.46089 * 299.16330 * 8 7 6 31 31 H 1.08993 * 109.46053 * 179.19513 * 8 7 6 32 32 H 1.09001 * 109.47375 * 300.00212 * 12 10 9 33 33 H 1.09000 * 109.47140 * 60.00230 * 12 10 9 34 34 H 1.09002 * 109.47497 * 179.97438 * 12 10 9 35 35 H 0.97002 * 119.99998 * 179.97438 * 16 15 13 36 36 H 1.09005 * 109.46314 * 181.76064 * 21 9 8 37 37 H 1.08998 * 109.46244 * 301.72632 * 21 9 8 38 38 H 1.09004 * 109.50441 * 180.87586 * 22 21 9 39 39 H 1.09002 * 109.53781 * 60.78566 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0055 5 6 3.5299 -0.6212 -0.0005 6 6 4.7969 -1.4371 -0.0011 7 6 5.6182 -1.1077 1.2486 8 6 6.9310 -1.8932 1.2121 9 7 7.6829 -1.5364 0.0023 10 6 9.0101 -2.1663 0.0023 11 1 9.5714 -1.8308 0.8744 12 6 8.8526 -3.6873 0.0513 13 6 9.7507 -1.7775 -1.2512 14 1 9.2821 -1.1278 -1.9757 15 6 11.0263 -2.2511 -1.4733 16 7 11.6725 -1.9122 -2.5674 17 14 11.8364 -3.3753 -0.2205 18 1 11.5219 -4.7893 -0.5478 19 1 13.3074 -3.1749 -0.2537 20 1 11.3238 -3.0555 1.1360 21 6 6.9340 -1.8872 -1.2112 22 6 5.6213 -1.1014 -1.2470 23 7 2.3031 -1.0841 -0.0003 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 4.5470 -2.4980 -0.0035 28 1 5.0532 -1.3843 2.1387 29 1 5.8338 -0.0394 1.2718 30 1 6.7149 -2.9615 1.2034 31 1 7.5243 -1.6500 2.0934 32 1 8.3171 -3.9682 0.9582 33 1 8.2913 -4.0228 -0.8207 34 1 9.8373 -4.1548 0.0509 35 1 12.5701 -2.2451 -2.7234 36 1 7.5296 -1.6396 -2.0899 37 1 6.7178 -2.9555 -1.2085 38 1 5.0584 -1.3735 -2.1400 39 1 5.8363 -0.0329 -1.2641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053639232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:24 Heat of formation + Delta-G solvation = 72.358280 kcal Electronic energy + Delta-G solvation = -20480.274876 eV Core-core repulsion = 17426.313116 eV Total energy + Delta-G solvation = -3053.961760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.60569 -38.98568 -36.14041 -35.32824 -32.88918 -31.75700 -30.60344 -29.50064 -28.91446 -25.43101 -24.86512 -23.50148 -22.81206 -21.74813 -20.25610 -18.93488 -18.08709 -17.36959 -16.57290 -15.82006 -15.21497 -14.61064 -14.36443 -14.10949 -13.89516 -13.78712 -13.35005 -13.23632 -12.98811 -12.61583 -12.39520 -12.30800 -11.87078 -11.67638 -11.48893 -11.43724 -11.14661 -10.98498 -10.78848 -10.61890 -10.40291 -10.24360 -9.91121 -9.74786 -9.52033 -9.00318 -8.61617 -7.39739 -6.09611 -4.08604 1.11639 2.15030 2.80229 3.23796 3.34292 3.36973 3.53677 3.95343 4.36945 4.61816 4.77116 4.81601 4.88183 5.12490 5.18383 5.22257 5.31738 5.47764 5.48037 5.64163 5.73167 5.80537 5.82502 5.88748 5.98862 6.03587 6.12985 6.19936 6.25896 6.33744 6.46763 6.59031 6.64906 6.86950 7.19258 7.57468 7.89061 8.04109 8.13161 8.61182 8.96299 9.52200 11.03046 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.050004 B = 0.004109 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.815617 B = 6812.469768 C = 7033.041873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.391 5.391 4 O 0.080 5.920 5 C 0.205 3.795 6 C 0.003 3.997 7 C -0.109 4.109 8 C 0.052 3.948 9 N -0.521 5.521 10 C 0.182 3.818 11 H 0.042 0.958 12 C -0.187 4.187 13 C -0.507 4.507 14 H 0.084 0.916 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.268 1.268 21 C 0.062 3.938 22 C -0.113 4.113 23 N -0.492 5.492 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.361 0.247 6.446 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 N -0.101 5.101 4 O 0.023 5.977 5 C -0.015 4.015 6 C -0.017 4.017 7 C -0.148 4.148 8 C -0.076 4.076 9 N -0.245 5.245 10 C 0.074 3.926 11 H 0.060 0.940 12 C -0.246 4.246 13 C -0.545 4.545 14 H 0.102 0.898 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.225 1.225 20 H -0.193 1.193 21 C -0.066 4.066 22 C -0.151 4.151 23 N -0.226 5.226 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.777 1.263 6.340 18.916 hybrid contribution 0.526 -1.678 0.611 1.862 sum -17.251 -0.415 6.952 18.603 Atomic orbital electron populations 1.20099 0.83160 1.04504 1.04097 1.25896 1.00524 0.83820 1.00868 1.74639 0.89549 1.24054 1.21859 1.85294 1.22021 1.24890 1.65472 1.29029 0.96772 0.82016 0.93696 1.20139 0.85036 0.97243 0.99331 1.21705 0.95622 1.02689 0.94800 1.22031 0.93473 0.96725 0.95398 1.62110 1.03326 1.59031 0.99994 1.19760 0.86177 0.87632 0.99029 0.94010 1.22832 1.00456 1.01857 0.99451 1.20978 0.99328 1.30233 1.03988 0.89787 1.24918 0.96974 0.96125 0.95105 1.69876 1.12911 1.45264 1.25618 0.86886 0.77779 0.80937 0.82673 1.20835 1.22486 1.19287 1.22018 0.92453 0.96079 0.96035 1.21795 0.95974 1.02885 0.94487 1.71928 0.99780 1.29404 1.21510 0.89506 0.89635 0.89167 0.87115 0.91565 0.90025 0.94968 0.90666 0.95032 0.92698 0.93717 0.92603 0.88023 0.95299 0.91443 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.16 2.08 8.22 -156.36 -1.28 0.80 16 3 N -0.39 -5.64 12.16 30.90 0.38 -5.26 16 4 O 0.08 1.16 11.31 18.11 0.20 1.37 16 5 C 0.20 2.78 7.03 -13.06 -0.09 2.69 16 6 C 0.00 0.04 2.73 -91.65 -0.25 -0.21 16 7 C -0.11 -1.39 5.36 -26.65 -0.14 -1.53 16 8 C 0.05 0.79 4.89 -3.84 -0.02 0.77 16 9 N -0.52 -9.73 4.67 -228.09 -1.07 -10.80 16 10 C 0.18 4.01 2.00 -68.86 -0.14 3.88 16 11 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 12 C -0.19 -3.83 7.99 37.16 0.30 -3.53 16 13 C -0.51 -13.42 8.44 -34.44 -0.29 -13.71 16 14 H 0.08 2.41 6.64 -52.48 -0.35 2.06 16 15 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 16 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 17 Si 0.89 21.25 24.37 -169.99 -4.14 17.10 16 18 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 19 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.27 -6.12 6.53 56.52 0.37 -5.76 16 21 C 0.06 1.07 4.75 -3.83 -0.02 1.05 16 22 C -0.11 -1.58 5.36 -26.65 -0.14 -1.72 16 23 N -0.49 -6.88 11.55 -9.87 -0.11 -6.99 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.03 0.47 6.63 -51.93 -0.34 0.13 16 31 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 33 H 0.05 1.10 6.63 -51.93 -0.34 0.75 16 34 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.10 2.03 6.03 -51.93 -0.31 1.71 16 37 H 0.03 0.48 6.71 -51.93 -0.35 0.14 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -29.90 302.46 -6.78 -36.68 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.57 Total: -1.04 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.80 Total: -9.77 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.03 Total: -48.90 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.14 Total: 17.10 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.90 -6.78 -36.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053639232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.034 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds