Wall clock time and date at job start Mon Mar 30 2020 04:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29949 * 126.28890 * 2 1 4 4 O 1.21300 * 110.24771 * 179.72281 * 3 2 1 5 5 C 1.33638 * 109.81310 * 0.46540 * 4 3 2 6 6 C 1.50698 * 126.55131 * 179.79694 * 5 4 3 7 7 C 1.53124 * 109.52336 * 59.69406 * 6 5 4 8 8 C 1.53037 * 109.28148 * 182.44065 * 7 6 5 9 9 N 1.46844 * 109.52152 * 59.17731 * 8 7 6 10 10 C 1.46906 * 110.99887 * 174.16043 * 9 8 7 11 11 H 1.09000 * 109.47033 * 300.00129 * 10 9 8 12 12 C 1.52997 * 109.46907 * 59.99965 * 10 9 8 13 13 C 1.50699 * 109.47140 * 180.02562 * 10 9 8 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00302 * 179.97438 * 15 13 10 17 17 Si 1.86805 * 119.99832 * 0.02562 * 15 13 10 18 18 H 1.48506 * 109.47310 * 89.99428 * 17 15 13 19 19 H 1.48491 * 109.47296 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.46905 * 329.99956 * 17 15 13 21 21 C 1.46850 * 111.19991 * 298.25708 * 9 8 7 22 22 C 1.53032 * 109.52098 * 61.74469 * 21 9 8 23 23 N 1.31125 * 106.89950 * 359.54012 * 5 4 3 24 24 H 1.08993 * 109.47195 * 269.97974 * 1 2 3 25 25 H 1.09000 * 109.46989 * 29.98010 * 1 2 3 26 26 H 1.08994 * 109.46768 * 149.97905 * 1 2 3 27 27 H 1.09000 * 109.52436 * 179.81841 * 6 5 4 28 28 H 1.08997 * 109.50392 * 62.49487 * 7 6 5 29 29 H 1.09008 * 109.53016 * 302.40048 * 7 6 5 30 30 H 1.08995 * 109.46089 * 299.16330 * 8 7 6 31 31 H 1.08993 * 109.46053 * 179.19513 * 8 7 6 32 32 H 1.09001 * 109.47375 * 300.00212 * 12 10 9 33 33 H 1.09000 * 109.47140 * 60.00230 * 12 10 9 34 34 H 1.09002 * 109.47497 * 179.97438 * 12 10 9 35 35 H 0.97002 * 119.99998 * 179.97438 * 16 15 13 36 36 H 1.09005 * 109.46314 * 181.76064 * 21 9 8 37 37 H 1.08998 * 109.46244 * 301.72632 * 21 9 8 38 38 H 1.09004 * 109.50441 * 180.87586 * 22 21 9 39 39 H 1.09002 * 109.53781 * 60.78566 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0055 5 6 3.5299 -0.6212 -0.0005 6 6 4.7969 -1.4371 -0.0011 7 6 5.6182 -1.1077 1.2486 8 6 6.9310 -1.8932 1.2121 9 7 7.6829 -1.5364 0.0023 10 6 9.0101 -2.1663 0.0023 11 1 9.5714 -1.8308 0.8744 12 6 8.8526 -3.6873 0.0513 13 6 9.7507 -1.7775 -1.2512 14 1 9.2821 -1.1278 -1.9757 15 6 11.0263 -2.2511 -1.4733 16 7 11.6725 -1.9122 -2.5674 17 14 11.8364 -3.3753 -0.2205 18 1 11.5219 -4.7893 -0.5478 19 1 13.3074 -3.1749 -0.2537 20 1 11.3238 -3.0555 1.1360 21 6 6.9340 -1.8872 -1.2112 22 6 5.6213 -1.1014 -1.2470 23 7 2.3031 -1.0841 -0.0003 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 4.5470 -2.4980 -0.0035 28 1 5.0532 -1.3843 2.1387 29 1 5.8338 -0.0394 1.2718 30 1 6.7149 -2.9615 1.2034 31 1 7.5243 -1.6500 2.0934 32 1 8.3171 -3.9682 0.9582 33 1 8.2913 -4.0228 -0.8207 34 1 9.8373 -4.1548 0.0509 35 1 12.5701 -2.2451 -2.7234 36 1 7.5296 -1.6396 -2.0899 37 1 6.7178 -2.9555 -1.2085 38 1 5.0584 -1.3735 -2.1400 39 1 5.8363 -0.0329 -1.2641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053639232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:23 Heat of formation + Delta-G solvation = 50.265537 kcal Electronic energy + Delta-G solvation = -20481.232889 eV Core-core repulsion = 17426.313116 eV Total energy + Delta-G solvation = -3054.919773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.62771 -40.32096 -37.18654 -36.68045 -34.51622 -33.22220 -31.82529 -30.78101 -29.94589 -27.22058 -26.24585 -24.52971 -24.06892 -23.01202 -21.65501 -20.25432 -19.14082 -18.52634 -18.39452 -17.26679 -16.61927 -16.03282 -15.68668 -15.35069 -15.14732 -14.70050 -14.62348 -14.46243 -14.24097 -13.93289 -13.81507 -13.47310 -13.18148 -13.05123 -13.01080 -12.62467 -12.47164 -12.18116 -12.13460 -11.96652 -11.86392 -11.62028 -11.47984 -11.25661 -10.95793 -10.77591 -10.68580 -8.85916 -8.22750 -6.25211 0.08111 1.16648 1.33739 1.39935 1.49412 1.77734 2.36414 2.60530 3.06046 3.11721 3.27242 3.71733 3.76495 3.84634 4.27263 4.28442 4.44917 4.46920 4.53032 4.54956 4.57895 4.63194 4.66903 4.70632 4.78605 4.83762 4.86167 4.92403 5.04677 5.06692 5.11310 5.18652 5.30491 5.36926 5.53430 5.69473 6.10558 6.47416 6.78641 6.83200 7.11334 7.39929 8.93537 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.050004 B = 0.004109 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.815617 B = 6812.469768 C = 7033.041873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.413 5.413 4 O 0.064 5.936 5 C 0.207 3.793 6 C 0.012 3.988 7 C -0.101 4.101 8 C 0.052 3.948 9 N -0.537 5.537 10 C 0.184 3.816 11 H 0.036 0.964 12 C -0.182 4.182 13 C -0.503 4.503 14 H 0.045 0.955 15 C 0.011 3.989 16 N -0.951 5.951 17 Si 0.948 3.052 18 H -0.270 1.270 19 H -0.304 1.304 20 H -0.246 1.246 21 C 0.068 3.932 22 C -0.103 4.103 23 N -0.504 5.504 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.488 -1.073 8.679 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.126 5.126 4 O 0.011 5.989 5 C -0.013 4.013 6 C -0.008 4.008 7 C -0.140 4.140 8 C -0.076 4.076 9 N -0.261 5.261 10 C 0.075 3.925 11 H 0.054 0.946 12 C -0.240 4.240 13 C -0.542 4.542 14 H 0.063 0.937 15 C -0.186 4.186 16 N -0.592 5.592 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.232 1.232 20 H -0.170 1.170 21 C -0.060 4.060 22 C -0.142 4.142 23 N -0.238 5.238 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.144 0.856 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.919 -0.056 8.594 21.693 hybrid contribution 1.079 -1.187 -0.141 1.610 sum -18.840 -1.243 8.453 20.686 Atomic orbital electron populations 1.20357 0.80144 1.05774 1.05648 1.26718 1.02228 0.83055 0.99003 1.74649 0.89670 1.24920 1.23366 1.85275 1.22366 1.25293 1.66016 1.29090 0.96983 0.81841 0.93380 1.20065 0.84496 0.97880 0.98356 1.21644 0.94629 1.01937 0.95781 1.22131 0.94043 0.97888 0.93553 1.61994 1.02774 1.59383 1.01961 1.19548 0.87650 0.89211 0.96040 0.94599 1.22703 1.00290 0.99853 1.01191 1.21284 0.99456 1.28564 1.04850 0.93710 1.25753 0.97824 0.98014 0.96981 1.70038 1.13446 1.47561 1.28121 0.85875 0.76138 0.79254 0.81134 1.19683 1.23223 1.16953 1.21871 0.93062 0.96968 0.94133 1.21641 0.94709 1.01660 0.96148 1.71956 0.99974 1.29921 1.21973 0.87670 0.88403 0.87843 0.85614 0.88973 0.90761 0.93603 0.90070 0.91520 0.92851 0.94845 0.92750 0.91953 0.94478 0.90242 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.16 3.84 8.22 138.46 1.14 4.98 16 3 N -0.41 -11.35 12.16 -60.32 -0.73 -12.09 16 4 O 0.06 1.78 11.31 74.88 0.85 2.63 16 5 C 0.21 5.22 7.03 88.38 0.62 5.84 16 6 C 0.01 0.28 2.73 -11.46 -0.03 0.25 16 7 C -0.10 -2.28 5.36 30.65 0.16 -2.12 16 8 C 0.05 1.40 4.89 86.33 0.42 1.82 16 9 N -0.54 -19.57 4.67 -875.53 -4.09 -23.67 16 10 C 0.18 7.96 2.00 44.17 0.09 8.05 16 11 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 12 C -0.18 -6.97 7.99 71.98 0.57 -6.40 16 13 C -0.50 -27.38 8.44 25.60 0.22 -27.16 16 14 H 0.04 2.72 6.64 -2.91 -0.02 2.71 16 15 C 0.01 0.63 5.45 84.65 0.46 1.09 16 16 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 17 Si 0.95 43.70 24.37 68.60 1.67 45.37 16 18 H -0.27 -11.91 6.87 99.48 0.68 -11.23 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 20 H -0.25 -10.34 6.53 99.48 0.65 -9.69 16 21 C 0.07 2.32 4.75 86.32 0.41 2.73 16 22 C -0.10 -2.79 5.36 30.64 0.16 -2.63 16 23 N -0.50 -12.89 11.55 -303.21 -3.50 -16.40 16 24 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 1.14 6.63 -2.39 -0.02 1.13 16 31 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 32 H 0.07 2.08 6.54 -2.39 -0.02 2.07 16 33 H 0.05 2.04 6.63 -2.39 -0.02 2.02 16 34 H 0.03 1.35 3.27 -2.39 -0.01 1.35 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.06 2.62 6.03 -2.38 -0.01 2.60 16 37 H 0.04 1.20 6.71 -2.39 -0.02 1.18 16 38 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -66.35 302.46 0.44 -65.91 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.97 Total: 10.05 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.98 Total: -13.61 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -8.03 Total: -110.35 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: 0.85 Total: 2.63 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -66.35 0.44 -65.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053639232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.172 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds