Wall clock time and date at job start Mon Mar 30 2020 04:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00019 * 2 1 4 4 C 1.52998 * 109.47243 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46929 * 68.51650 * 4 3 2 6 6 C 1.46899 * 111.00163 * 76.28296 * 5 4 3 7 7 C 1.50694 * 109.47303 * 184.89228 * 6 5 4 8 8 H 1.07999 * 119.99855 * 275.44126 * 7 6 5 9 9 C 1.37876 * 120.00445 * 95.70867 * 7 6 5 10 10 N 1.31515 * 120.00395 * 158.66942 * 9 7 6 11 11 Si 1.86802 * 119.99745 * 338.67852 * 9 7 6 12 12 H 1.48501 * 109.47194 * 84.53408 * 11 9 7 13 13 H 1.48502 * 109.47105 * 204.53250 * 11 9 7 14 14 H 1.48500 * 109.46994 * 324.53011 * 11 9 7 15 15 C 1.39325 * 110.99801 * 200.23518 * 5 4 3 16 16 N 1.32346 * 119.62502 * 321.10975 * 15 5 4 17 17 C 1.31959 * 121.69875 * 180.02562 * 16 15 5 18 18 C 1.38673 * 120.75061 * 0.02562 * 17 16 15 19 19 N 1.40043 * 120.40865 * 179.97438 * 18 17 16 20 20 C 1.39374 * 119.18237 * 359.97438 * 18 17 16 21 21 C 1.38321 * 118.44173 * 359.73222 * 20 18 17 22 22 C 1.50700 * 120.41269 * 180.28728 * 21 20 18 23 23 H 1.09006 * 109.46848 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47649 * 300.00081 * 1 2 3 25 25 H 1.08997 * 109.47014 * 60.00167 * 1 2 3 26 26 H 1.08999 * 109.46989 * 59.99769 * 3 2 1 27 27 H 1.09006 * 109.47212 * 300.00064 * 3 2 1 28 28 H 1.08997 * 109.47676 * 308.51526 * 4 3 2 29 29 H 1.09005 * 109.47387 * 188.51189 * 4 3 2 30 30 H 1.09003 * 109.47372 * 64.89130 * 6 5 4 31 31 H 1.09005 * 109.47143 * 304.88871 * 6 5 4 32 32 H 0.96998 * 120.00164 * 180.02562 * 10 9 7 33 33 H 1.08003 * 119.63054 * 180.02562 * 17 16 15 34 34 H 0.97000 * 120.00526 * 0.02562 * 19 18 17 35 35 H 0.97009 * 120.00182 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.77576 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.46828 * 263.02760 * 22 21 20 38 38 H 1.09005 * 109.47131 * 23.02494 * 22 21 20 39 39 H 1.09001 * 109.47371 * 143.02754 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9840 0.6401 -1.2879 6 6 3.9341 1.6653 -2.3387 7 6 4.2846 1.0424 -3.6654 8 1 5.3195 0.9344 -3.9546 9 6 3.2840 0.6152 -4.5124 10 7 3.5274 0.4688 -5.7965 11 14 1.5827 0.2447 -3.8360 12 1 0.7968 1.5022 -3.7567 13 1 0.8913 -0.7152 -4.7337 14 1 1.7073 -0.3476 -2.4799 15 6 5.2620 0.0955 -1.1820 16 7 6.1715 0.7014 -0.4355 17 6 7.3942 0.2219 -0.3068 18 6 7.7706 -0.9441 -0.9562 19 7 9.0702 -1.4463 -0.8149 20 6 6.8395 -1.6101 -1.7512 21 6 5.5658 -1.0812 -1.8576 22 6 4.5223 -1.7684 -2.7000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8468 0.5182 0.8049 29 1 3.9778 2.1692 0.1528 30 1 4.6479 2.4564 -2.1089 31 1 2.9296 2.0856 -2.3889 32 1 2.8233 0.1687 -6.3924 33 1 8.1099 0.7435 0.3114 34 1 9.7134 -0.9782 -0.2599 35 1 9.3273 -2.2623 -1.2722 36 1 7.1049 -2.5204 -2.2682 37 1 4.4825 -1.2994 -3.6832 38 1 4.7801 -2.8218 -2.8101 39 1 3.5494 -1.6810 -2.2162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071225537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:12 Heat of formation + Delta-G solvation = -14.608424 kcal Electronic energy + Delta-G solvation = -21247.243185 eV Core-core repulsion = 18189.510266 eV Total energy + Delta-G solvation = -3057.732919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33069 -39.04907 -37.72174 -35.30460 -34.70173 -34.05100 -31.14500 -29.98732 -28.72966 -27.35959 -26.64180 -24.33859 -24.00115 -22.40302 -21.56775 -19.18174 -18.28432 -17.63138 -17.36029 -17.11134 -16.70564 -16.43531 -16.02898 -15.74988 -15.57680 -14.89004 -14.65023 -14.38775 -13.96769 -13.79645 -13.59748 -13.48760 -13.24819 -13.01606 -12.80626 -12.49102 -12.30685 -12.15953 -11.79886 -11.72671 -11.58834 -11.43350 -10.58128 -10.43436 -10.36717 -9.88609 -9.23240 -8.28858 -8.17772 -6.23573 0.55475 0.65853 1.37393 1.47365 1.80861 2.48889 2.81852 3.01667 3.05555 3.14358 3.41335 3.87777 4.11213 4.22562 4.27387 4.33276 4.43777 4.52891 4.57648 4.59469 4.66588 4.79841 4.81311 4.86399 4.94549 4.96149 5.03647 5.13493 5.24591 5.40428 5.60111 5.71811 5.83404 6.17767 6.34476 6.49683 6.53393 6.75788 6.89944 7.08599 7.35647 7.40458 8.85528 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.008865 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.286926 B = 3157.902088 C = 4091.641877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.069 3.931 4 C 0.064 3.936 5 N -0.476 5.476 6 C 0.176 3.824 7 C -0.504 4.504 8 H 0.022 0.978 9 C 0.054 3.946 10 N -0.927 5.927 11 Si 0.903 3.097 12 H -0.284 1.284 13 H -0.301 1.301 14 H -0.200 1.200 15 C 0.245 3.755 16 N -0.501 5.501 17 C 0.010 3.990 18 C 0.160 3.840 19 N -0.859 5.859 20 C -0.171 4.171 21 C -0.055 4.055 22 C -0.097 4.097 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.055 0.945 30 H -0.006 1.006 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.169 0.831 34 H 0.409 0.591 35 H 0.407 0.593 36 H 0.146 0.854 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -3.906 13.249 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C -0.008 4.008 4 C -0.064 4.064 5 N -0.199 5.199 6 C 0.052 3.948 7 C -0.542 4.542 8 H 0.041 0.959 9 C -0.147 4.147 10 N -0.565 5.565 11 Si 0.727 3.273 12 H -0.211 1.211 13 H -0.228 1.228 14 H -0.122 1.122 15 C 0.014 3.986 16 N -0.212 5.212 17 C -0.153 4.153 18 C 0.052 3.948 19 N -0.401 5.401 20 C -0.201 4.201 21 C -0.059 4.059 22 C -0.154 4.154 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.186 0.814 34 H 0.239 0.761 35 H 0.236 0.764 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.974 -3.689 13.401 14.039 hybrid contribution 0.149 -0.025 -0.687 0.704 sum 2.122 -3.715 12.714 13.414 Atomic orbital electron populations 1.22881 0.80766 1.03443 1.00205 1.87975 1.20283 1.28107 1.95305 1.22617 0.93173 0.84876 1.00106 1.21982 0.93421 0.99182 0.91779 1.60611 1.18521 1.34952 1.05775 1.20046 0.96049 0.89359 0.89303 1.20575 0.92501 1.41647 0.99457 0.95923 1.25526 1.01977 0.93466 0.93737 1.70145 1.35853 1.46424 1.04084 0.86533 0.79714 0.78370 0.82679 1.21067 1.22770 1.12156 1.19406 0.89492 0.93248 0.96476 1.67484 1.02571 1.32130 1.19055 1.22259 0.93524 0.95626 1.03896 1.18687 0.87399 0.93942 0.94728 1.42191 1.08769 1.31498 1.57640 1.21058 0.92452 1.03100 1.03538 1.20385 0.95394 0.94225 0.95893 1.20709 0.97222 0.97787 0.99647 0.88814 0.92158 0.95206 0.90507 0.94642 0.91450 0.92688 0.98797 0.93783 0.92560 0.81446 0.76051 0.76360 0.83671 0.91314 0.92008 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.08 9.85 -148.98 -1.47 -15.55 16 3 C 0.07 2.31 6.15 71.98 0.44 2.75 16 4 C 0.06 2.41 4.72 86.30 0.41 2.82 16 5 N -0.48 -21.11 3.37 -706.00 -2.38 -23.49 16 6 C 0.18 8.69 4.26 85.56 0.36 9.05 16 7 C -0.50 -28.58 6.39 25.60 0.16 -28.42 16 8 H 0.02 1.46 8.06 -2.91 -0.02 1.43 16 9 C 0.05 3.07 4.11 84.65 0.35 3.42 16 10 N -0.93 -56.32 13.96 21.45 0.30 -56.02 16 11 Si 0.90 43.72 26.29 68.60 1.80 45.53 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 14 H -0.20 -9.27 5.89 99.48 0.59 -8.69 16 15 C 0.24 10.77 4.97 132.95 0.66 11.43 16 16 N -0.50 -20.30 9.50 -192.61 -1.83 -22.13 16 17 C 0.01 0.35 11.05 84.78 0.94 1.28 16 18 C 0.16 4.80 6.79 38.21 0.26 5.06 16 19 N -0.86 -16.65 9.11 -51.00 -0.46 -17.11 16 20 C -0.17 -5.93 9.69 22.56 0.22 -5.71 16 21 C -0.05 -2.31 5.40 -19.65 -0.11 -2.42 16 22 C -0.10 -4.18 8.50 71.24 0.61 -3.57 16 23 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.27 6.67 -2.38 -0.02 1.25 16 28 H 0.07 2.53 7.89 -2.39 -0.02 2.51 16 29 H 0.06 2.01 7.99 -2.38 -0.02 1.99 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.04 2.11 4.92 -2.38 -0.01 2.10 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.17 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.41 5.83 8.86 -92.71 -0.82 5.01 16 35 H 0.41 6.33 8.86 -92.70 -0.82 5.50 16 36 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.07 3.50 5.27 -2.39 -0.01 3.49 16 38 H 0.06 2.23 8.05 -2.38 -0.02 2.22 16 39 H 0.06 2.88 6.90 -2.39 -0.02 2.87 16 Total: -1.00 -70.19 313.82 0.81 -69.38 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.69 Total: 21.81 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.55 Total: -2.42 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -4.38 Total: -118.75 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -1.47 Total: -15.55 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.80 Total: 45.53 kcal Total: -70.19 0.81 -69.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071225537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.771 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds