Wall clock time and date at job start Mon Mar 30 2020 04:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48508 * 109.46846 * 239.99586 * 3 2 1 5 5 H 1.48492 * 109.47380 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46967 * 120.00031 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47204 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.46961 * 110.99735 * 169.99695 * 11 10 9 13 13 C 1.53059 * 109.36302 * 183.18721 * 12 11 10 14 14 N 1.46952 * 109.36370 * 301.60193 * 13 12 11 15 15 C 1.46906 * 110.99889 * 183.18679 * 14 13 12 16 16 C 1.50701 * 109.46965 * 170.00017 * 15 14 13 17 17 C 1.41375 * 126.80349 * 95.00441 * 16 15 14 18 18 C 1.35450 * 103.98805 * 179.97438 * 17 16 15 19 19 O 1.34036 * 106.44546 * 359.97438 * 18 17 16 20 20 N 1.20920 * 111.56588 * 359.71145 * 19 18 17 21 21 C 1.46961 * 110.88410 * 59.32054 * 14 13 12 22 22 C 1.46955 * 111.00246 * 293.79849 * 11 10 9 23 23 H 0.97005 * 119.99777 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46944 * 59.99115 * 9 7 2 25 25 H 1.09005 * 109.46757 * 299.99494 * 9 7 2 26 26 H 1.09004 * 109.47133 * 59.99668 * 10 9 7 27 27 H 1.08996 * 109.46997 * 299.99748 * 10 9 7 28 28 H 1.09003 * 109.48904 * 63.22353 * 12 11 10 29 29 H 1.08989 * 109.49349 * 303.15552 * 12 11 10 30 30 H 1.08999 * 109.48651 * 181.63251 * 13 12 11 31 31 H 1.08996 * 109.48556 * 61.57139 * 13 12 11 32 32 H 1.08993 * 109.47164 * 289.99960 * 15 14 13 33 33 H 1.08996 * 109.46920 * 49.99994 * 15 14 13 34 34 H 1.08003 * 128.00564 * 359.95789 * 17 16 15 35 35 H 1.08000 * 126.77410 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.48904 * 60.64354 * 21 14 13 37 37 H 1.09002 * 109.49205 * 180.70887 * 21 14 13 38 38 H 1.09008 * 109.48713 * 296.78155 * 22 11 10 39 39 H 1.09002 * 109.48661 * 56.82117 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 0.0012 12 6 2.4174 -6.0660 -0.2371 13 6 1.6047 -7.3611 -0.3081 14 7 0.8624 -7.5399 0.9475 15 6 0.1278 -8.8121 0.9481 16 6 -0.4163 -9.0773 2.3282 17 6 -1.7104 -8.7633 2.8031 18 6 -1.7029 -9.1983 4.0858 19 8 -0.4865 -9.7177 4.3032 20 7 0.2097 -9.6471 3.3171 21 6 -0.0443 -6.4082 1.1858 22 6 0.7683 -5.1132 1.2567 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8719 -3.6043 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 3.1376 -6.1328 0.5783 29 1 2.9461 -5.9164 -1.1784 30 1 2.2782 -8.2053 -0.4559 31 1 0.9033 -7.3050 -1.1405 32 1 -0.6964 -8.7561 0.2371 33 1 0.8007 -9.6203 0.6614 34 1 -2.5179 -8.2867 2.2672 35 1 -2.5164 -9.1384 4.7936 36 1 -0.7646 -6.3413 0.3703 37 1 -0.5731 -6.5578 2.1271 38 1 1.4698 -5.1692 2.0892 39 1 0.0951 -4.2687 1.4047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075843580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:14 Heat of formation + Delta-G solvation = 72.891324 kcal Electronic energy + Delta-G solvation = -19934.464629 eV Core-core repulsion = 16880.525984 eV Total energy + Delta-G solvation = -3053.938645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.06037 -39.13559 -36.12471 -34.00869 -32.84941 -31.81345 -30.74427 -30.05482 -27.74065 -25.02471 -23.60467 -23.26025 -23.13906 -20.99236 -20.31552 -19.42008 -17.89930 -17.70020 -16.54627 -15.82256 -15.49859 -14.80804 -14.68506 -14.52483 -14.37306 -13.95064 -13.78403 -13.53047 -12.87781 -12.50286 -12.33554 -12.14699 -11.74181 -11.37533 -11.20922 -11.07116 -10.91860 -10.82345 -10.55837 -10.52024 -10.25866 -9.81971 -9.77374 -9.33648 -9.12630 -8.39577 -8.32065 -7.71478 -5.99162 -4.01450 1.37300 2.04735 3.12799 3.34017 3.38202 3.40757 3.88303 4.04020 4.37887 4.44430 4.55696 4.96026 5.00547 5.07060 5.17199 5.29286 5.36403 5.37880 5.48098 5.55286 5.59659 5.64374 5.76658 5.83294 5.92426 6.12257 6.18083 6.30567 6.41056 6.51565 6.93138 6.96894 7.03260 7.50973 7.57525 7.80067 7.89953 8.08450 8.15703 8.44188 9.05443 9.62111 11.12202 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.003593 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.427817 B = 7790.423525 C = 8308.772290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.063 3.937 11 N -0.540 5.540 12 C 0.056 3.944 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.132 3.868 16 C 0.027 3.973 17 C -0.230 4.230 18 C -0.063 4.063 19 O 0.098 5.902 20 N -0.350 5.350 21 C 0.058 3.942 22 C 0.058 3.942 23 H 0.261 0.739 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.215 0.785 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -19.479 4.263 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.063 4.063 11 N -0.265 5.265 12 C -0.073 4.073 13 C -0.066 4.066 14 N -0.262 5.262 15 C 0.004 3.996 16 C -0.133 4.133 17 C -0.252 4.252 18 C -0.144 4.144 19 O 0.031 5.969 20 N -0.053 5.053 21 C -0.069 4.069 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.188 0.812 35 H 0.232 0.768 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.847 -19.870 4.397 20.549 hybrid contribution -0.418 1.424 -0.218 1.500 sum -3.265 -18.446 4.179 19.193 Atomic orbital electron populations 1.69963 1.06021 1.26664 1.50655 1.24984 0.94831 0.99150 0.95286 0.86656 0.79582 0.83136 0.78609 1.20231 1.21272 1.20284 1.21166 0.92968 0.91089 1.50923 0.92849 1.19084 0.93967 0.90113 0.97686 1.22321 0.96739 0.88249 0.99008 1.62275 1.27707 1.02582 1.33935 1.22112 0.94219 0.90123 1.00833 1.22161 0.96916 0.97924 0.89618 1.62117 1.27498 1.01144 1.35392 1.20288 0.97300 0.93473 0.88587 1.23457 0.92013 1.00136 0.97711 1.22802 0.99069 1.07443 0.95911 1.26002 0.90000 0.99866 0.98523 1.84857 1.20138 1.60196 1.31756 1.73852 1.17795 1.18908 0.94784 1.22249 0.94125 0.89893 1.00678 1.22144 0.97523 0.96538 0.90816 0.92964 0.95788 0.96550 0.96158 0.92069 0.94636 0.90478 0.90651 0.93752 0.92372 0.89194 0.81202 0.76799 0.93758 0.90849 0.94801 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 10 C 0.06 1.37 4.90 -3.83 -0.02 1.35 16 11 N -0.54 -10.06 4.71 -234.47 -1.10 -11.17 16 12 C 0.06 0.86 5.61 -3.76 -0.02 0.84 16 13 C 0.06 0.80 5.61 -3.77 -0.02 0.78 16 14 N -0.54 -7.30 4.70 -235.91 -1.11 -8.41 16 15 C 0.13 1.49 5.55 -4.97 -0.03 1.46 16 16 C 0.03 0.31 6.02 -82.10 -0.49 -0.18 16 17 C -0.23 -2.13 10.11 -39.38 -0.40 -2.53 16 18 C -0.06 -0.49 12.30 29.74 0.37 -0.13 16 19 O 0.10 1.09 11.20 17.19 0.19 1.28 16 20 N -0.35 -4.65 12.07 33.42 0.40 -4.24 16 21 C 0.06 0.85 5.42 -3.77 -0.02 0.83 16 22 C 0.06 1.03 5.41 -3.77 -0.02 1.01 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.45 6.49 -51.93 -0.34 0.11 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.11 8.07 -51.94 -0.42 0.69 16 30 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 34 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.01 6.41 -51.93 -0.33 0.67 16 38 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.09 1.76 6.34 -51.93 -0.33 1.43 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -32.31 317.78 -8.33 -40.65 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.01 Total: -3.86 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.20 Total: -9.58 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -1.07 Total: -50.00 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.19 Total: 1.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.31 -8.33 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075843580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.537 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds