Wall clock time and date at job start Mon Mar 30 2020 04:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48508 * 109.46846 * 239.99586 * 3 2 1 5 5 H 1.48492 * 109.47380 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46967 * 120.00031 * 3 2 1 7 7 C 1.37875 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00019 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47204 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.46961 * 110.99735 * 169.99695 * 11 10 9 13 13 C 1.53059 * 109.36302 * 183.18721 * 12 11 10 14 14 N 1.46952 * 109.36370 * 301.60193 * 13 12 11 15 15 C 1.46906 * 110.99889 * 183.18679 * 14 13 12 16 16 C 1.50701 * 109.46965 * 170.00017 * 15 14 13 17 17 C 1.41375 * 126.80349 * 95.00441 * 16 15 14 18 18 C 1.35450 * 103.98805 * 179.97438 * 17 16 15 19 19 O 1.34036 * 106.44546 * 359.97438 * 18 17 16 20 20 N 1.20920 * 111.56588 * 359.71145 * 19 18 17 21 21 C 1.46961 * 110.88410 * 59.32054 * 14 13 12 22 22 C 1.46955 * 111.00246 * 293.79849 * 11 10 9 23 23 H 0.97005 * 119.99777 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46944 * 59.99115 * 9 7 2 25 25 H 1.09005 * 109.46757 * 299.99494 * 9 7 2 26 26 H 1.09004 * 109.47133 * 59.99668 * 10 9 7 27 27 H 1.08996 * 109.46997 * 299.99748 * 10 9 7 28 28 H 1.09003 * 109.48904 * 63.22353 * 12 11 10 29 29 H 1.08989 * 109.49349 * 303.15552 * 12 11 10 30 30 H 1.08999 * 109.48651 * 181.63251 * 13 12 11 31 31 H 1.08996 * 109.48556 * 61.57139 * 13 12 11 32 32 H 1.08993 * 109.47164 * 289.99960 * 15 14 13 33 33 H 1.08996 * 109.46920 * 49.99994 * 15 14 13 34 34 H 1.08003 * 128.00564 * 359.95789 * 17 16 15 35 35 H 1.08000 * 126.77410 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.48904 * 60.64354 * 21 14 13 37 37 H 1.09002 * 109.49205 * 180.70887 * 21 14 13 38 38 H 1.09008 * 109.48713 * 296.78155 * 22 11 10 39 39 H 1.09002 * 109.48661 * 56.82117 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 0.0012 12 6 2.4174 -6.0660 -0.2371 13 6 1.6047 -7.3611 -0.3081 14 7 0.8624 -7.5399 0.9475 15 6 0.1278 -8.8121 0.9481 16 6 -0.4163 -9.0773 2.3282 17 6 -1.7104 -8.7633 2.8031 18 6 -1.7029 -9.1983 4.0858 19 8 -0.4865 -9.7177 4.3032 20 7 0.2097 -9.6471 3.3171 21 6 -0.0443 -6.4082 1.1858 22 6 0.7683 -5.1132 1.2567 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8719 -3.6043 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 3.1376 -6.1328 0.5783 29 1 2.9461 -5.9164 -1.1784 30 1 2.2782 -8.2053 -0.4559 31 1 0.9033 -7.3050 -1.1405 32 1 -0.6964 -8.7561 0.2371 33 1 0.8007 -9.6203 0.6614 34 1 -2.5179 -8.2867 2.2672 35 1 -2.5164 -9.1384 4.7936 36 1 -0.7646 -6.3413 0.3703 37 1 -0.5731 -6.5578 2.1271 38 1 1.4698 -5.1692 2.0892 39 1 0.0951 -4.2687 1.4047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075843580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:13 Heat of formation + Delta-G solvation = 49.660564 kcal Electronic energy + Delta-G solvation = -19935.471991 eV Core-core repulsion = 16880.525984 eV Total energy + Delta-G solvation = -3054.946006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.85298 -40.37755 -37.42094 -35.38223 -34.51440 -32.59948 -32.04884 -31.71562 -29.10206 -26.61016 -24.99624 -24.67023 -23.95353 -22.14278 -21.76716 -20.71887 -18.67877 -18.63948 -18.48132 -17.10425 -16.61146 -16.44056 -16.09295 -15.81752 -15.49844 -15.30828 -15.11142 -14.49848 -14.23117 -14.14146 -13.63835 -13.34438 -13.14381 -12.98471 -12.78435 -12.49810 -12.29524 -12.26412 -12.06361 -11.91708 -11.72056 -11.31729 -11.23313 -11.03435 -10.53566 -10.51077 -9.45945 -9.22273 -8.20266 -6.31657 0.67457 1.27437 1.40124 1.43276 1.51201 2.40123 2.51213 2.91235 3.02920 3.13014 3.23146 3.71616 3.86466 4.07104 4.09849 4.24165 4.27516 4.38073 4.45824 4.47742 4.52622 4.58780 4.66328 4.71890 4.78900 4.87116 4.89847 4.94449 5.01936 5.08554 5.17051 5.43691 5.64032 5.74919 5.90763 5.93287 6.10294 6.26378 6.31194 6.84614 7.37303 7.41187 8.91628 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.003593 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.427817 B = 7790.423525 C = 8308.772290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.079 3.921 11 N -0.548 5.548 12 C 0.055 3.945 13 C 0.067 3.933 14 N -0.548 5.548 15 C 0.134 3.866 16 C 0.010 3.990 17 C -0.244 4.244 18 C -0.045 4.045 19 O 0.086 5.914 20 N -0.388 5.388 21 C 0.073 3.927 22 C 0.061 3.939 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.007 1.007 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.189 0.811 35 H 0.260 0.740 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.022 0.978 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -20.140 4.283 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.048 4.048 11 N -0.272 5.272 12 C -0.073 4.073 13 C -0.060 4.060 14 N -0.274 5.274 15 C 0.007 3.993 16 C -0.149 4.149 17 C -0.266 4.266 18 C -0.126 4.126 19 O 0.020 5.980 20 N -0.094 5.094 21 C -0.055 4.055 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.206 0.794 35 H 0.276 0.724 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.774 -20.562 4.421 21.214 hybrid contribution -0.501 1.584 -0.188 1.672 sum -3.275 -18.978 4.233 19.719 Atomic orbital electron populations 1.70099 1.07765 1.27856 1.51276 1.25941 0.95760 1.03233 0.94539 0.85496 0.78289 0.78063 0.79161 1.19104 1.20663 1.19313 1.21599 0.93499 0.92356 1.51176 0.92314 1.18895 0.94135 0.91791 0.95060 1.21969 0.95432 0.88445 0.98948 1.62216 1.28227 1.02464 1.34342 1.22233 0.94038 0.89953 1.01118 1.22153 0.97118 0.97264 0.89504 1.62070 1.27830 1.01662 1.35882 1.20334 0.97851 0.92163 0.89001 1.23731 0.93137 1.00312 0.97729 1.23112 0.98707 1.08108 0.96644 1.26847 0.89467 0.97372 0.98923 1.84804 1.21301 1.60554 1.31313 1.73848 1.19257 1.20603 0.95641 1.22042 0.93589 0.88691 1.01222 1.22073 0.97038 0.97582 0.90071 0.92711 0.98760 0.98824 0.96718 0.91477 0.95295 0.89222 0.88051 0.93331 0.90674 0.88456 0.79355 0.72428 0.93630 0.90021 0.96006 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.04 2.10 4.91 29.85 0.15 2.25 16 10 C 0.08 3.50 4.90 86.30 0.42 3.92 16 11 N -0.55 -20.56 4.71 -895.71 -4.22 -24.78 16 12 C 0.05 1.63 5.61 86.31 0.48 2.11 16 13 C 0.07 1.62 5.61 86.31 0.48 2.10 16 14 N -0.55 -14.15 4.70 -900.27 -4.23 -18.38 16 15 C 0.13 2.78 5.55 85.56 0.48 3.26 16 16 C 0.01 0.22 6.02 43.58 0.26 0.48 16 17 C -0.24 -4.00 10.11 22.40 0.23 -3.77 16 18 C -0.05 -0.60 12.30 67.18 0.83 0.22 16 19 O 0.09 1.81 11.20 71.67 0.80 2.61 16 20 N -0.39 -9.99 12.07 -49.56 -0.60 -10.59 16 21 C 0.07 2.07 5.42 86.31 0.47 2.53 16 22 C 0.06 2.21 5.41 86.31 0.47 2.67 16 23 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H -0.01 -0.38 6.49 -2.38 -0.02 -0.40 16 26 H 0.01 0.65 8.12 -2.38 -0.02 0.63 16 27 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 30 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 33 H 0.10 1.86 8.03 -2.39 -0.02 1.84 16 34 H 0.19 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.26 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 2.18 6.41 -2.39 -0.02 2.16 16 38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 2.65 6.34 -2.39 -0.02 2.63 16 Total: -1.00 -71.08 317.78 0.04 -71.04 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.02 Total: 5.37 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.96 Total: -15.12 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -8.76 Total: -110.49 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.80 Total: 2.61 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.08 0.04 -71.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075843580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.697 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds