Wall clock time and date at job start Mon Mar 30 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.88006 * 2 1 4 4 O 1.21284 * 119.99842 * 109.53749 * 3 2 1 5 5 N 1.34775 * 120.00078 * 289.53833 * 3 2 1 6 6 C 1.46503 * 119.99951 * 173.89561 * 5 3 2 7 7 C 1.50696 * 109.47527 * 89.99624 * 6 5 3 8 8 H 1.07997 * 119.99863 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00054 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99879 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99832 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46993 * 269.99410 * 11 9 7 13 13 H 1.48495 * 109.47601 * 29.99362 * 11 9 7 14 14 H 1.48500 * 109.47179 * 149.99864 * 11 9 7 15 15 C 1.46498 * 119.99984 * 353.88575 * 5 3 2 16 16 C 1.52996 * 109.47561 * 258.38598 * 15 5 3 17 17 C 1.47204 * 109.47199 * 173.95153 * 16 15 5 18 18 N 5.39353 * 91.11876 * 270.53522 * 2 1 3 19 19 C 1.54317 * 109.88986 * 121.03299 * 2 1 3 20 20 C 1.55400 * 102.89916 * 97.38222 * 19 2 1 21 21 C 1.54906 * 101.74208 * 35.47978 * 20 19 2 22 22 N 1.47447 * 109.89012 * 238.97035 * 2 1 3 23 23 H 1.08999 * 109.47430 * 59.29865 * 1 2 3 24 24 H 1.08997 * 109.47218 * 179.29559 * 1 2 3 25 25 H 1.08997 * 109.47102 * 299.29659 * 1 2 3 26 26 H 1.09000 * 109.46967 * 329.98904 * 6 5 3 27 27 H 1.09009 * 109.46803 * 209.99879 * 6 5 3 28 28 H 0.97000 * 119.99791 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47243 * 18.39110 * 15 5 3 30 30 H 1.09003 * 109.46635 * 138.39099 * 15 5 3 31 31 H 1.09002 * 109.47498 * 293.95431 * 16 15 5 32 32 H 1.09001 * 109.47162 * 53.95218 * 16 15 5 33 33 H 1.09000 * 110.70208 * 215.66456 * 19 2 1 34 34 H 1.08995 * 110.70685 * 338.90348 * 19 2 1 35 35 H 1.09003 * 110.86961 * 277.39387 * 20 19 2 36 36 H 1.08999 * 111.06112 * 153.64908 * 20 19 2 37 37 H 1.08998 * 110.37341 * 204.18897 * 21 20 19 38 38 H 1.09002 * 110.46760 * 81.89901 * 21 20 19 39 39 H 1.00899 * 110.99989 * 117.17136 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0424 1.4172 0.0000 4 8 2.5789 1.8680 0.9899 5 7 1.9045 2.1836 -1.1000 6 6 2.2798 3.5991 -1.0582 7 6 3.7288 3.7463 -1.4451 8 1 4.3120 2.8728 -1.6964 9 6 4.3101 4.9962 -1.4780 10 7 5.5748 5.1245 -1.8152 11 14 3.3016 6.5070 -1.0425 12 1 2.6615 7.0454 -2.2696 13 1 2.2526 6.1354 -0.0593 14 1 4.1889 7.5413 -0.4526 15 6 1.3794 1.6013 -2.3374 16 6 2.5354 1.3196 -3.2993 17 6 2.0273 0.6032 -4.4806 18 7 1.6353 0.0504 -5.3923 19 6 2.0550 -0.7481 1.2434 20 6 2.3560 -2.1694 0.6918 21 6 2.8617 -1.8521 -0.7376 22 7 2.0316 -0.7147 -1.1881 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3633 -1.0276 -0.0126 25 1 -0.3633 0.5029 0.8962 26 1 2.1321 3.9846 -0.0494 27 1 1.6586 4.1605 -1.7562 28 1 5.9838 6.0038 -1.8380 29 1 0.8613 0.6698 -2.1094 30 1 0.6832 2.3002 -2.8010 31 1 2.9860 2.2617 -3.6116 32 1 3.2846 0.7073 -2.7974 33 1 2.9650 -0.2802 1.6189 34 1 1.2916 -0.7873 2.0204 35 1 1.4494 -2.7737 0.6600 36 1 3.1306 -2.6618 1.2796 37 1 2.7148 -2.7116 -1.3916 38 1 3.9140 -1.5686 -0.7155 39 1 2.5591 -0.0965 -1.7860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079518361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:05 Heat of formation + Delta-G solvation = -5.746296 kcal Electronic energy + Delta-G solvation = -21254.695984 eV Core-core repulsion = 18197.347356 eV Total energy + Delta-G solvation = -3057.348628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87728 -38.61731 -38.16243 -36.85171 -34.76257 -32.54025 -32.49904 -31.05724 -29.69325 -26.92120 -25.28425 -24.80008 -22.42044 -21.81972 -19.95002 -19.35986 -18.54813 -17.90613 -17.42768 -16.59865 -16.47160 -16.07311 -15.61722 -15.33170 -14.97161 -14.70913 -14.50028 -14.21098 -13.84040 -13.70016 -13.63461 -13.36713 -13.29546 -13.08071 -12.85655 -12.79789 -12.48739 -12.37833 -12.20390 -12.00248 -11.94404 -11.88024 -11.62218 -11.54490 -10.73950 -10.69699 -9.56840 -9.52691 -8.25937 -6.29066 1.37323 1.42014 1.50484 1.54290 1.81320 1.83233 2.14756 2.37107 3.02277 3.09016 3.11774 3.44171 3.76656 3.84366 4.01605 4.06713 4.20365 4.28175 4.36337 4.51756 4.73015 4.78654 4.80072 4.84855 4.96490 4.98279 4.99270 5.04661 5.09247 5.18675 5.27119 5.38437 5.50812 5.58917 5.75806 6.14410 6.29858 6.55974 6.59432 6.73458 7.23951 7.37980 8.89570 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.007454 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.908252 B = 3755.633593 C = 4583.735683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.088 3.912 3 C 0.489 3.511 4 O -0.578 6.578 5 N -0.591 5.591 6 C 0.218 3.782 7 C -0.524 4.524 8 H 0.046 0.954 9 C 0.015 3.985 10 N -0.943 5.943 11 Si 0.935 3.065 12 H -0.254 1.254 13 H -0.255 1.255 14 H -0.291 1.291 15 C 0.096 3.904 16 C -0.040 4.040 17 C 0.246 3.754 18 N -0.473 5.473 19 C -0.126 4.126 20 C -0.115 4.115 21 C 0.032 3.968 22 N -0.673 5.673 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.265 0.735 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.033 0.967 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 -12.001 2.061 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.006 4.006 3 C 0.276 3.724 4 O -0.456 6.456 5 N -0.321 5.321 6 C 0.096 3.904 7 C -0.563 4.563 8 H 0.064 0.936 9 C -0.183 4.183 10 N -0.583 5.583 11 Si 0.759 3.241 12 H -0.178 1.178 13 H -0.179 1.179 14 H -0.218 1.218 15 C -0.028 4.028 16 C -0.081 4.081 17 C -0.071 4.071 18 N -0.151 5.151 19 C -0.165 4.165 20 C -0.153 4.153 21 C -0.096 4.096 22 N -0.311 5.311 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.052 0.948 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.193 -12.802 1.058 17.711 hybrid contribution 1.616 1.926 0.801 2.638 sum -10.577 -10.876 1.859 15.285 Atomic orbital electron populations 1.21888 0.89586 1.04322 1.02547 1.21966 0.98824 0.87261 0.92542 1.21856 0.78472 0.89323 0.82744 1.90658 1.44149 1.75161 1.35623 1.47917 1.62602 1.10863 1.10725 1.19494 0.94699 0.78910 0.97304 1.21529 0.95724 0.93625 1.45395 0.93607 1.25701 0.95757 1.02223 0.94612 1.70032 1.13472 1.24704 1.50091 0.85894 0.79202 0.79136 0.79843 1.17826 1.17935 1.21754 1.22098 0.94679 1.02576 0.83495 1.19808 0.99360 1.00717 0.88251 1.28859 0.92379 0.92256 0.93649 1.81199 1.10143 1.11298 1.12425 1.22797 1.01670 0.95777 0.96222 1.22734 1.02680 0.95403 0.94460 1.23043 0.94772 0.94504 0.97313 1.62705 1.41144 1.11855 1.15426 0.91041 0.89003 0.92044 0.96264 0.92554 0.92602 0.85149 0.87647 0.86166 0.87881 0.92939 0.88992 0.88607 0.89615 0.88106 0.94814 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.37 71.98 0.60 -1.96 16 2 C 0.09 2.33 0.77 3.12 0.00 2.33 16 3 C 0.49 18.00 6.41 87.66 0.56 18.56 16 4 O -0.58 -27.14 15.19 -3.04 -0.05 -27.18 16 5 N -0.59 -20.81 2.48 -826.16 -2.05 -22.85 16 6 C 0.22 9.39 4.19 85.63 0.36 9.75 16 7 C -0.52 -27.43 8.90 25.60 0.23 -27.20 16 8 H 0.05 2.62 7.88 -2.91 -0.02 2.60 16 9 C 0.02 0.84 5.47 84.66 0.46 1.30 16 10 N -0.94 -56.21 13.96 21.45 0.30 -55.91 16 11 Si 0.94 41.77 27.47 68.60 1.88 43.65 16 12 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 13 H -0.26 -10.94 6.54 99.48 0.65 -10.29 16 14 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 15 C 0.10 2.46 4.32 86.38 0.37 2.83 16 16 C -0.04 -1.05 4.71 28.79 0.14 -0.92 16 17 C 0.25 6.54 15.43 89.44 1.38 7.92 16 18 N -0.47 -14.37 18.54 20.01 0.37 -14.00 16 19 C -0.13 -3.15 5.75 31.87 0.18 -2.97 16 20 C -0.12 -2.11 7.08 32.07 0.23 -1.89 16 21 C 0.03 0.67 7.58 86.77 0.66 1.33 16 22 N -0.67 -16.02 5.49 -464.90 -2.55 -18.58 16 23 H 0.07 1.37 6.06 -2.39 -0.01 1.36 16 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.02 0.93 6.57 -2.39 -0.02 0.91 16 27 H 0.06 2.15 7.44 -2.38 -0.02 2.13 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.13 2.91 3.55 -2.39 -0.01 2.90 16 30 H 0.11 2.29 8.07 -2.39 -0.02 2.27 16 31 H 0.12 3.66 7.48 -2.39 -0.02 3.64 16 32 H 0.10 2.80 6.02 -2.39 -0.01 2.79 16 33 H 0.05 1.68 7.05 -2.39 -0.02 1.66 16 34 H 0.09 2.00 7.83 -2.39 -0.02 1.98 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.34 8.92 3.06 -89.69 -0.27 8.64 16 Total: -1.00 -69.20 311.02 3.82 -65.38 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.74 Total: 20.40 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.17 Total: 9.10 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -3.93 Total: -111.34 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.65 kcal Total: -69.20 3.82 -65.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079518361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.632 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds