Wall clock time and date at job start Mon Mar 30 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46598 * 2 1 4 4 C 1.52995 * 109.47112 * 120.00465 * 2 1 3 5 5 C 1.53004 * 109.46914 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46806 * 299.99835 * 5 4 2 7 7 C 1.52995 * 109.47250 * 60.00370 * 6 5 4 8 8 N 1.46898 * 109.46992 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.47347 * 59.99565 * 7 6 5 10 10 O 1.21293 * 119.99859 * 341.84845 * 9 7 6 11 11 N 1.34780 * 119.99873 * 161.84249 * 9 7 6 12 12 C 1.37105 * 119.99643 * 184.65235 * 11 9 7 13 13 H 1.08001 * 120.00119 * 346.89134 * 12 11 9 14 14 C 1.38948 * 119.99746 * 166.89615 * 12 11 9 15 15 N 1.31410 * 120.00004 * 359.64709 * 14 12 11 16 16 Si 1.86801 * 120.00043 * 179.65121 * 14 12 11 17 17 H 1.48495 * 109.47061 * 59.99529 * 16 14 12 18 18 H 1.48498 * 109.46944 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46905 * 299.99858 * 16 14 12 20 20 C 1.46496 * 120.00309 * 4.65298 * 11 9 7 21 21 C 1.47199 * 109.46775 * 263.17412 * 20 11 9 22 22 N 6.37214 * 127.15043 * 267.82823 * 2 1 3 23 23 C 1.53004 * 109.46914 * 299.99563 * 7 6 5 24 24 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47029 * 59.99350 * 1 2 3 26 26 H 1.09006 * 109.46934 * 299.99691 * 1 2 3 27 27 H 1.09006 * 109.47093 * 299.99746 * 4 2 1 28 28 H 1.08997 * 109.47199 * 60.00292 * 4 2 1 29 29 H 1.08998 * 109.46830 * 180.02562 * 5 4 2 30 30 H 1.08998 * 109.47699 * 59.99767 * 5 4 2 31 31 H 1.09008 * 109.46942 * 300.00332 * 6 5 4 32 32 H 1.08997 * 109.46835 * 180.02562 * 6 5 4 33 33 H 1.00895 * 110.99932 * 305.62866 * 8 7 6 34 34 H 1.00893 * 111.00853 * 69.59181 * 8 7 6 35 35 H 0.97002 * 120.00345 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47167 * 23.16443 * 20 11 9 37 37 H 1.08993 * 109.47144 * 143.17132 * 20 11 9 38 38 H 1.08998 * 109.47699 * 300.00233 * 23 7 6 39 39 H 1.08999 * 109.47312 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4416 0.0001 7 6 3.5705 -0.7203 -1.2491 8 7 4.0601 -1.4127 -2.4485 9 6 4.0723 0.7007 -1.2487 10 8 4.4773 1.2005 -0.2205 11 7 4.0710 1.4161 -2.3910 12 6 4.6149 2.6745 -2.4122 13 1 4.8502 3.1768 -1.4856 14 6 4.8633 3.3035 -3.6260 15 7 4.5833 2.6895 -4.7536 16 14 5.5953 5.0219 -3.6549 17 1 6.9183 5.0077 -2.9808 18 1 5.7620 5.4652 -5.0623 19 1 4.6878 5.9584 -2.9446 20 6 3.4885 0.8492 -3.6097 21 6 4.5556 0.2623 -4.4365 22 7 5.3782 -0.1925 -5.0753 23 6 2.0405 -0.7208 -1.2494 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 1.6767 -0.2075 2.1392 28 1 1.6767 -1.7490 1.2490 29 1 3.9333 -1.2350 2.1391 30 1 3.9331 0.3070 1.2497 31 1 3.7174 -2.4694 -0.0002 32 1 5.1704 -1.4416 0.0005 33 1 5.0644 -1.5070 -2.4270 34 1 3.6147 -2.3118 -2.5543 35 1 4.7570 3.1285 -5.6010 36 1 2.7689 0.0753 -3.3426 37 1 2.9846 1.6357 -4.1714 38 1 1.6774 -1.7486 -1.2496 39 1 1.6771 -0.2066 -2.1390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080905324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:10 Heat of formation + Delta-G solvation = 6.178693 kcal Electronic energy + Delta-G solvation = -21859.652520 eV Core-core repulsion = 18802.820998 eV Total energy + Delta-G solvation = -3056.831522 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20282 -37.15595 -35.52104 -34.02934 -33.86402 -31.97763 -31.05386 -28.00647 -27.18756 -26.10505 -25.05567 -22.21806 -21.39383 -20.03360 -18.39337 -17.73188 -16.19705 -16.00440 -15.61817 -14.89819 -14.36035 -14.17368 -14.00757 -13.83112 -13.27128 -13.06256 -12.95048 -12.54768 -12.30589 -12.07158 -11.67702 -11.60741 -11.51761 -11.27525 -11.13546 -11.03854 -10.90988 -10.52220 -10.37883 -10.30534 -10.18910 -10.14413 -9.93688 -9.78157 -9.13532 -8.46041 -8.00671 -7.94696 -6.32332 -3.94481 3.15059 3.23861 3.26339 3.68594 3.98333 4.28302 4.60333 4.70588 4.83827 5.01166 5.06695 5.15096 5.35581 5.40134 5.55343 5.68936 5.76943 5.80758 5.85462 5.89525 5.94038 6.01307 6.08040 6.16135 6.20911 6.31963 6.51676 6.57285 6.59096 6.71409 6.71622 7.03835 7.13885 7.36471 7.50820 7.69214 7.99784 8.41130 9.09519 9.28303 9.36217 9.86636 10.62132 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.007718 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.212194 B = 3626.934030 C = 4045.326622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.119 4.119 7 C 0.105 3.895 8 N -0.832 5.832 9 C 0.467 3.533 10 O -0.576 6.576 11 N -0.431 5.431 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.029 3.971 15 N -0.888 5.888 16 Si 0.935 3.065 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.232 3.768 21 C 0.298 3.702 22 N -0.521 5.521 23 C -0.100 4.100 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.345 0.655 34 H 0.337 0.663 35 H 0.272 0.728 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.062 0.938 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 -6.557 6.208 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.143 4.143 5 C -0.180 4.180 6 C -0.159 4.159 7 C 0.010 3.990 8 N -0.363 5.363 9 C 0.255 3.745 10 O -0.460 6.460 11 N -0.149 5.149 12 C -0.431 4.431 13 H 0.124 0.876 14 C -0.173 4.173 15 N -0.529 5.529 16 Si 0.761 3.239 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.105 3.895 21 C -0.019 4.019 22 N -0.203 5.203 23 C -0.138 4.138 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.143 -6.261 5.132 10.796 hybrid contribution 0.519 0.166 0.600 0.810 sum -6.624 -6.095 5.732 10.672 Atomic orbital electron populations 1.21805 0.95562 1.01148 1.01569 1.21131 0.94816 1.00952 0.94416 0.90061 1.21512 0.96390 0.99204 0.97185 1.22038 0.94831 1.05599 0.95514 1.21968 1.00401 0.97757 0.95762 1.20945 0.95632 0.93582 0.88869 1.59233 1.11639 1.26115 1.39275 1.19656 0.83928 0.86563 0.84359 1.90343 1.52579 1.71624 1.31470 1.43567 1.50724 1.13869 1.06736 1.19800 1.37827 0.90925 0.94510 0.87592 1.25292 0.96909 1.00414 0.94666 1.69705 1.47686 1.37616 0.97924 0.85850 0.79572 0.81261 0.77170 1.20029 1.20930 1.19787 1.19090 0.89452 0.96874 0.84036 1.28713 0.93854 0.87610 0.91719 1.80825 1.10449 1.17003 1.12058 1.21712 0.92620 1.00762 0.98735 0.93188 0.92629 0.92961 0.92631 0.93270 0.93771 0.86290 0.93005 0.92376 0.84175 0.84999 0.91655 0.89190 0.86201 0.91923 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.09 -1.34 2.50 -90.62 -0.23 -1.57 16 3 H 0.08 1.42 7.06 -51.93 -0.37 1.06 16 4 C -0.11 -1.43 5.20 -26.73 -0.14 -1.57 16 5 C -0.14 -2.23 5.63 -26.73 -0.15 -2.38 16 6 C -0.12 -1.84 4.78 -26.73 -0.13 -1.97 16 7 C 0.11 1.74 0.58 -132.76 -0.08 1.66 16 8 N -0.83 -12.92 4.69 -0.20 0.00 -12.92 16 9 C 0.47 10.10 5.33 -10.99 -0.06 10.04 16 10 O -0.58 -13.97 12.62 5.55 0.07 -13.90 16 11 N -0.43 -10.02 2.60 -117.94 -0.31 -10.33 16 12 C -0.30 -7.84 9.47 -14.93 -0.14 -7.98 16 13 H 0.11 2.86 7.22 -52.49 -0.38 2.49 16 14 C 0.03 0.72 5.36 -17.47 -0.09 0.62 16 15 N -0.89 -22.48 8.00 55.50 0.44 -22.04 16 16 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C 0.23 4.88 4.66 -6.83 -0.03 4.85 16 21 C 0.30 6.85 11.00 -20.75 -0.23 6.62 16 22 N -0.52 -12.80 18.54 42.17 0.78 -12.02 16 23 C -0.10 -1.42 3.95 -26.73 -0.11 -1.53 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.12 2.30 4.96 -51.95 -0.26 2.04 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.34 5.85 8.85 -39.29 -0.35 5.50 16 34 H 0.34 4.22 8.92 -39.30 -0.35 3.87 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.09 1.60 3.75 -51.93 -0.19 1.41 16 37 H 0.12 2.67 6.31 -51.93 -0.33 2.34 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.12 5.94 -51.93 -0.31 0.82 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -28.45 299.57 -6.03 -34.48 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.47 Total: 11.32 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.04 Total: 5.48 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.92 Total: -57.30 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.07 Total: -13.90 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.45 -6.03 -34.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080905324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.657 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds