Wall clock time and date at job start Mon Mar 30 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46598 * 2 1 4 4 C 1.52995 * 109.47112 * 120.00465 * 2 1 3 5 5 C 1.53004 * 109.46914 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46806 * 299.99835 * 5 4 2 7 7 C 1.52995 * 109.47250 * 60.00370 * 6 5 4 8 8 N 1.46898 * 109.46992 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.47347 * 59.99565 * 7 6 5 10 10 O 1.21293 * 119.99859 * 341.84845 * 9 7 6 11 11 N 1.34780 * 119.99873 * 161.84249 * 9 7 6 12 12 C 1.37105 * 119.99643 * 184.65235 * 11 9 7 13 13 H 1.08001 * 120.00119 * 346.89134 * 12 11 9 14 14 C 1.38948 * 119.99746 * 166.89615 * 12 11 9 15 15 N 1.31410 * 120.00004 * 359.64709 * 14 12 11 16 16 Si 1.86801 * 120.00043 * 179.65121 * 14 12 11 17 17 H 1.48495 * 109.47061 * 59.99529 * 16 14 12 18 18 H 1.48498 * 109.46944 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46905 * 299.99858 * 16 14 12 20 20 C 1.46496 * 120.00309 * 4.65298 * 11 9 7 21 21 C 1.47199 * 109.46775 * 263.17412 * 20 11 9 22 22 N 6.37214 * 127.15043 * 267.82823 * 2 1 3 23 23 C 1.53004 * 109.46914 * 299.99563 * 7 6 5 24 24 H 1.08998 * 109.47335 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47029 * 59.99350 * 1 2 3 26 26 H 1.09006 * 109.46934 * 299.99691 * 1 2 3 27 27 H 1.09006 * 109.47093 * 299.99746 * 4 2 1 28 28 H 1.08997 * 109.47199 * 60.00292 * 4 2 1 29 29 H 1.08998 * 109.46830 * 180.02562 * 5 4 2 30 30 H 1.08998 * 109.47699 * 59.99767 * 5 4 2 31 31 H 1.09008 * 109.46942 * 300.00332 * 6 5 4 32 32 H 1.08997 * 109.46835 * 180.02562 * 6 5 4 33 33 H 1.00895 * 110.99932 * 305.62866 * 8 7 6 34 34 H 1.00893 * 111.00853 * 69.59181 * 8 7 6 35 35 H 0.97002 * 120.00345 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47167 * 23.16443 * 20 11 9 37 37 H 1.08993 * 109.47144 * 143.17132 * 20 11 9 38 38 H 1.08998 * 109.47699 * 300.00233 * 23 7 6 39 39 H 1.08999 * 109.47312 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4416 0.0001 7 6 3.5705 -0.7203 -1.2491 8 7 4.0601 -1.4127 -2.4485 9 6 4.0723 0.7007 -1.2487 10 8 4.4773 1.2005 -0.2205 11 7 4.0710 1.4161 -2.3910 12 6 4.6149 2.6745 -2.4122 13 1 4.8502 3.1768 -1.4856 14 6 4.8633 3.3035 -3.6260 15 7 4.5833 2.6895 -4.7536 16 14 5.5953 5.0219 -3.6549 17 1 6.9183 5.0077 -2.9808 18 1 5.7620 5.4652 -5.0623 19 1 4.6878 5.9584 -2.9446 20 6 3.4885 0.8492 -3.6097 21 6 4.5556 0.2623 -4.4365 22 7 5.3782 -0.1925 -5.0753 23 6 2.0405 -0.7208 -1.2494 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 1.6767 -0.2075 2.1392 28 1 1.6767 -1.7490 1.2490 29 1 3.9333 -1.2350 2.1391 30 1 3.9331 0.3070 1.2497 31 1 3.7174 -2.4694 -0.0002 32 1 5.1704 -1.4416 0.0005 33 1 5.0644 -1.5070 -2.4270 34 1 3.6147 -2.3118 -2.5543 35 1 4.7570 3.1285 -5.6010 36 1 2.7689 0.0753 -3.3426 37 1 2.9846 1.6357 -4.1714 38 1 1.6774 -1.7486 -1.2496 39 1 1.6771 -0.2066 -2.1390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080905324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:09 Heat of formation + Delta-G solvation = -11.840724 kcal Electronic energy + Delta-G solvation = -21860.433901 eV Core-core repulsion = 18802.820998 eV Total energy + Delta-G solvation = -3057.612902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68375 -38.67482 -37.31475 -35.80336 -35.24175 -33.60790 -32.46901 -29.25461 -28.94779 -27.16143 -26.84121 -23.70069 -22.66426 -21.21931 -19.96944 -19.59489 -17.84511 -17.65240 -17.04887 -16.44916 -15.78240 -15.68582 -15.43456 -15.18142 -14.78684 -14.61376 -14.34330 -14.08169 -13.53277 -13.46213 -13.17091 -13.07800 -13.00754 -12.89828 -12.73088 -12.57362 -12.28249 -12.15208 -12.14468 -11.85347 -11.56105 -11.47124 -11.24745 -11.01447 -10.94872 -10.01064 -9.82508 -9.42951 -8.22835 -5.92150 1.38527 1.42517 1.51436 1.98294 2.20327 2.45589 2.79986 3.11760 3.27588 3.47675 3.78575 3.91563 4.08081 4.15028 4.21970 4.35492 4.42773 4.62585 4.63502 4.72355 4.83937 4.94086 4.97185 5.01826 5.08565 5.19462 5.23559 5.28414 5.38858 5.47065 5.49514 5.54840 5.58372 5.83241 5.99279 6.14504 6.52356 6.61149 7.20310 7.45028 7.54479 8.07516 8.66492 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.007718 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.212194 B = 3626.934030 C = 4045.326622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.036 0.964 4 C -0.100 4.100 5 C -0.144 4.144 6 C -0.116 4.116 7 C 0.115 3.885 8 N -0.835 5.835 9 C 0.464 3.536 10 O -0.608 6.608 11 N -0.448 5.448 12 C -0.329 4.329 13 H 0.082 0.918 14 C -0.002 4.002 15 N -0.898 5.898 16 Si 0.986 3.014 17 H -0.285 1.285 18 H -0.277 1.277 19 H -0.264 1.264 20 C 0.240 3.760 21 C 0.309 3.691 22 N -0.550 5.550 23 C -0.097 4.097 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.337 0.663 34 H 0.359 0.641 35 H 0.270 0.730 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -8.424 6.415 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.055 0.945 4 C -0.137 4.137 5 C -0.182 4.182 6 C -0.155 4.155 7 C 0.019 3.981 8 N -0.367 5.367 9 C 0.254 3.746 10 O -0.493 6.493 11 N -0.167 5.167 12 C -0.457 4.457 13 H 0.100 0.900 14 C -0.202 4.202 15 N -0.539 5.539 16 Si 0.811 3.189 17 H -0.211 1.211 18 H -0.202 1.202 19 H -0.189 1.189 20 C 0.114 3.886 21 C -0.007 4.007 22 N -0.233 5.233 23 C -0.135 4.135 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.912 -8.149 5.338 13.204 hybrid contribution 1.087 0.740 0.638 1.461 sum -7.825 -7.410 5.976 12.323 Atomic orbital electron populations 1.21754 0.93159 1.02752 1.01820 1.21098 0.96792 0.98523 0.94985 0.94538 1.21483 0.94453 1.00804 0.96951 1.21937 0.96715 1.03138 0.96370 1.21966 0.99227 0.99432 0.94898 1.20843 0.97283 0.90054 0.89904 1.59105 1.11281 1.27615 1.38665 1.20723 0.82252 0.88496 0.83174 1.90361 1.53337 1.73060 1.32561 1.43722 1.51509 1.13552 1.07899 1.19708 1.39335 0.92677 0.93952 0.90037 1.25859 0.96999 1.03083 0.94251 1.69811 1.47954 1.38292 0.97836 0.85081 0.78386 0.78224 0.77221 1.21096 1.20236 1.18854 1.19167 0.89143 0.97253 0.82993 1.29083 0.93626 0.86857 0.91171 1.80820 1.11246 1.18176 1.13044 1.21747 0.90292 1.02958 0.98500 0.90786 0.92680 0.92601 0.92294 0.90317 0.92434 0.90585 0.89314 0.94455 0.85086 0.82447 0.91936 0.85608 0.87439 0.88077 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.19 71.98 0.66 -2.10 16 2 C -0.09 -2.51 2.50 -10.79 -0.03 -2.54 16 3 H 0.04 1.29 7.06 -2.38 -0.02 1.27 16 4 C -0.10 -2.43 5.20 30.59 0.16 -2.27 16 5 C -0.14 -4.34 5.63 30.60 0.17 -4.17 16 6 C -0.12 -3.33 4.78 30.59 0.15 -3.19 16 7 C 0.11 3.59 0.58 2.78 0.00 3.59 16 8 N -0.83 -24.09 4.69 -154.54 -0.72 -24.82 16 9 C 0.46 20.37 5.33 87.65 0.47 20.84 16 10 O -0.61 -30.76 12.62 -3.07 -0.04 -30.79 16 11 N -0.45 -21.20 2.60 -645.44 -1.68 -22.89 16 12 C -0.33 -17.56 9.47 84.04 0.80 -16.77 16 13 H 0.08 4.65 7.22 -2.91 -0.02 4.63 16 14 C 0.00 -0.11 5.36 84.93 0.45 0.34 16 15 N -0.90 -45.74 8.00 21.66 0.17 -45.56 16 16 Si 0.99 42.49 29.55 68.60 2.03 44.51 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 20 C 0.24 10.02 4.66 84.57 0.39 10.42 16 21 C 0.31 14.07 11.00 89.44 0.98 15.06 16 22 N -0.55 -26.81 18.54 20.01 0.37 -26.44 16 23 C -0.10 -2.45 3.95 30.60 0.12 -2.33 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 3.02 4.96 -2.73 -0.01 3.01 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.34 11.00 8.85 -89.70 -0.79 10.21 16 34 H 0.36 7.64 8.92 -89.70 -0.80 6.84 16 35 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.13 4.26 3.75 -2.39 -0.01 4.25 16 37 H 0.11 4.80 6.31 -2.39 -0.02 4.78 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.93 5.94 -2.39 -0.01 1.92 16 Total: -1.00 -63.80 299.57 3.95 -59.85 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.51 Total: 29.25 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 4.33 Total: 16.88 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -1.86 Total: -119.70 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.04 Total: -30.79 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -63.80 3.95 -59.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080905324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.009 kcal (2) G-P(sol) polarization free energy of solvation -63.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds