Wall clock time and date at job start Mon Mar 30 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.53006 * 109.47145 * 119.99562 * 2 1 3 5 5 C 1.53001 * 109.46789 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47199 * 299.99986 * 5 4 2 7 7 C 1.52997 * 109.47385 * 60.00156 * 6 5 4 8 8 N 1.46896 * 109.46842 * 60.00003 * 7 6 5 9 9 C 1.50698 * 109.47639 * 180.02562 * 7 6 5 10 10 O 1.21295 * 119.99400 * 354.75130 * 9 7 6 11 11 N 1.34773 * 120.00486 * 174.75342 * 9 7 6 12 12 C 1.37096 * 120.00355 * 180.08362 * 11 9 7 13 13 H 1.07999 * 119.99404 * 29.81450 * 12 11 9 14 14 C 1.38947 * 120.00075 * 209.81307 * 12 11 9 15 15 N 1.31412 * 120.00149 * 38.40618 * 14 12 11 16 16 Si 1.86798 * 120.00105 * 218.41089 * 14 12 11 17 17 H 1.48499 * 109.47043 * 270.00084 * 16 14 12 18 18 H 1.48500 * 109.46902 * 29.99910 * 16 14 12 19 19 H 1.48493 * 109.47108 * 149.99879 * 16 14 12 20 20 C 1.46505 * 119.99379 * 0.07835 * 11 9 7 21 21 C 1.47195 * 109.47389 * 261.00431 * 20 11 9 22 22 N 4.41688 * 73.95708 * 258.71794 * 2 1 3 23 23 C 1.53002 * 109.47251 * 239.99797 * 2 1 3 24 24 H 1.09003 * 109.47424 * 300.00079 * 1 2 3 25 25 H 1.08999 * 109.47664 * 60.00240 * 1 2 3 26 26 H 1.09002 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46878 * 60.00441 * 4 2 1 28 28 H 1.08991 * 109.47337 * 300.00044 * 4 2 1 29 29 H 1.09005 * 109.46758 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.47415 * 59.99915 * 5 4 2 31 31 H 1.09013 * 109.47038 * 300.00426 * 6 5 4 32 32 H 1.08994 * 109.47298 * 180.02562 * 6 5 4 33 33 H 1.00903 * 111.00208 * 77.01507 * 8 7 6 34 34 H 1.00905 * 111.00211 * 200.96650 * 8 7 6 35 35 H 0.97007 * 119.99766 * 5.45556 * 15 14 12 36 36 H 1.09001 * 109.47397 * 21.01074 * 20 11 9 37 37 H 1.09005 * 109.46516 * 141.00707 * 20 11 9 38 38 H 1.08996 * 109.46978 * 59.99961 * 23 2 1 39 39 H 1.08997 * 109.46879 * 299.99791 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 7 4.0596 0.6647 -1.2487 9 6 4.0727 -1.4309 -2.4794 10 8 4.8465 -2.3586 -2.3705 11 7 3.6623 -1.0354 -3.7007 12 6 4.1179 -1.6829 -4.8199 13 1 4.3800 -2.7293 -4.7692 14 6 4.2424 -0.9927 -6.0194 15 7 4.6691 0.2502 -6.0212 16 14 3.8032 -1.8316 -7.6296 17 1 5.0058 -2.5069 -8.1801 18 1 2.7373 -2.8372 -7.3892 19 1 3.3174 -0.8176 -8.5996 20 6 2.7291 0.0863 -3.8321 21 6 1.3636 -0.4307 -4.0186 22 7 0.3093 -0.8305 -4.1628 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6767 -1.7489 1.2493 28 1 1.6767 -0.2074 2.1392 29 1 3.9333 -1.2348 2.1394 30 1 3.9329 0.3072 1.2497 31 1 3.7174 -2.4694 0.0002 32 1 5.1704 -1.4415 0.0007 33 1 5.0295 0.7058 -1.5241 34 1 3.4902 1.2494 -1.8420 35 1 4.9720 0.6602 -5.1958 36 1 2.7663 0.6974 -2.9303 37 1 3.0090 0.6926 -4.6936 38 1 1.6766 -0.2075 -2.1392 39 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080905344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:14 Heat of formation + Delta-G solvation = 6.947720 kcal Electronic energy + Delta-G solvation = -21714.731770 eV Core-core repulsion = 18657.933595 eV Total energy + Delta-G solvation = -3056.798174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47552 -37.62005 -36.43453 -34.85238 -33.71074 -32.24027 -31.30857 -28.47800 -27.85394 -26.21261 -25.00639 -22.52400 -21.48049 -19.53337 -18.87502 -18.36586 -17.14931 -16.60634 -15.72990 -15.33967 -14.73827 -14.41143 -13.94039 -13.87412 -13.85474 -13.51005 -13.35742 -12.92389 -12.37465 -12.26599 -12.06269 -12.03103 -11.71270 -11.64100 -11.44706 -11.17873 -11.10269 -10.89321 -10.64089 -10.36959 -10.33739 -10.27415 -10.13987 -9.76404 -9.48564 -9.08655 -8.18090 -7.98043 -6.93630 -4.14589 3.00545 3.14563 3.18848 3.29249 3.47608 3.52603 4.05504 4.36572 4.44547 4.71887 4.80937 4.85618 4.92974 5.08931 5.24939 5.38798 5.41201 5.51620 5.55178 5.73055 5.77679 5.81254 5.89131 5.96167 5.98001 6.14066 6.19420 6.22401 6.39146 6.47728 6.50890 6.55107 6.75302 7.23209 7.49610 7.63717 7.93378 7.99881 8.29979 8.66640 9.08778 9.54718 10.30010 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.007340 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.555353 B = 3814.053625 C = 4382.634971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.080 4.080 7 C 0.109 3.891 8 N -0.822 5.822 9 C 0.431 3.569 10 O -0.556 6.556 11 N -0.440 5.440 12 C -0.422 4.422 13 H 0.093 0.907 14 C 0.023 3.977 15 N -0.848 5.848 16 Si 1.055 2.945 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.277 1.277 20 C 0.165 3.835 21 C 0.210 3.790 22 N -0.443 5.443 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.348 0.652 34 H 0.336 0.664 35 H 0.277 0.723 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.076 0.924 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 4.512 9.946 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.119 4.119 7 C 0.013 3.987 8 N -0.358 5.358 9 C 0.219 3.781 10 O -0.436 6.436 11 N -0.162 5.162 12 C -0.548 4.548 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.480 5.480 16 Si 0.880 3.120 17 H -0.207 1.207 18 H -0.208 1.208 19 H -0.202 1.202 20 C 0.037 3.963 21 C -0.108 4.108 22 N -0.122 5.122 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.412 3.686 8.926 11.070 hybrid contribution 0.693 -0.323 0.446 0.886 sum -4.719 3.362 9.372 11.018 Atomic orbital electron populations 1.21853 0.95834 1.01602 1.01280 1.21024 0.94401 1.00388 0.94259 0.90025 1.21560 0.96182 1.00015 0.97032 1.21447 0.94938 1.01742 0.96651 1.21181 1.00844 0.97934 0.91914 1.21000 0.94985 0.88843 0.93842 1.59211 1.08082 1.07679 1.60874 1.21379 0.84207 0.87712 0.84826 1.90547 1.36989 1.30301 1.85752 1.43530 1.36418 1.30194 1.06055 1.20191 1.50119 0.96971 0.87478 0.88960 1.26285 0.93904 0.96163 1.02352 1.70834 1.30372 1.15883 1.30913 0.83748 0.77519 0.76077 0.74695 1.20652 1.20782 1.20183 1.19735 0.79204 0.91835 1.05561 1.29810 0.95023 0.93884 0.92064 1.81089 1.13259 1.07810 1.10031 1.22304 0.93210 1.01921 0.99041 0.92834 0.92948 0.93035 0.92685 0.92491 0.92902 0.90533 0.91894 0.91516 0.83888 0.84608 0.91214 0.87296 0.85674 0.90636 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.19 37.15 0.34 -1.43 16 2 C -0.08 -1.05 2.56 -90.62 -0.23 -1.28 16 3 H 0.08 1.01 7.60 -51.93 -0.39 0.61 16 4 C -0.11 -1.34 5.20 -26.73 -0.14 -1.48 16 5 C -0.11 -1.41 5.77 -26.73 -0.15 -1.57 16 6 C -0.08 -1.29 4.22 -26.73 -0.11 -1.40 16 7 C 0.11 1.81 0.56 -132.73 -0.07 1.74 16 8 N -0.82 -11.43 7.38 -0.18 0.00 -11.43 16 9 C 0.43 9.52 6.47 -10.99 -0.07 9.45 16 10 O -0.56 -14.59 15.76 5.54 0.09 -14.50 16 11 N -0.44 -9.92 2.42 -117.93 -0.29 -10.20 16 12 C -0.42 -10.99 8.74 -14.93 -0.13 -11.12 16 13 H 0.09 2.65 7.74 -52.49 -0.41 2.25 16 14 C 0.02 0.58 4.64 -17.47 -0.08 0.50 16 15 N -0.85 -21.06 12.18 55.50 0.68 -20.39 16 16 Si 1.05 22.89 30.05 -169.99 -5.11 17.79 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 C 0.17 3.08 4.76 -6.83 -0.03 3.05 16 21 C 0.21 4.15 12.92 -20.74 -0.27 3.88 16 22 N -0.44 -9.17 18.54 42.18 0.78 -8.39 16 23 C -0.13 -1.98 3.32 -26.70 -0.09 -2.07 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.98 7.60 -51.93 -0.39 0.58 16 31 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 33 H 0.35 5.03 8.80 -39.29 -0.35 4.68 16 34 H 0.34 4.26 5.96 -39.29 -0.23 4.02 16 35 H 0.28 6.72 7.82 -40.82 -0.32 6.40 16 36 H 0.11 1.64 2.72 -51.93 -0.14 1.50 16 37 H 0.13 2.47 5.55 -51.93 -0.29 2.18 16 38 H 0.08 1.21 2.60 -51.93 -0.14 1.07 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -28.87 305.58 -5.54 -34.41 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.25 Total: 9.85 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.04 Total: -1.73 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 1.17 Total: -50.42 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.50 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.11 Total: 17.79 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.87 -5.54 -34.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080905344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.355 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds