Wall clock time and date at job start Mon Mar 30 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.53006 * 109.47145 * 119.99562 * 2 1 3 5 5 C 1.53001 * 109.46789 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47199 * 299.99986 * 5 4 2 7 7 C 1.52997 * 109.47385 * 60.00156 * 6 5 4 8 8 N 1.46896 * 109.46842 * 60.00003 * 7 6 5 9 9 C 1.50698 * 109.47639 * 180.02562 * 7 6 5 10 10 O 1.21295 * 119.99400 * 354.75130 * 9 7 6 11 11 N 1.34773 * 120.00486 * 174.75342 * 9 7 6 12 12 C 1.37096 * 120.00355 * 180.08362 * 11 9 7 13 13 H 1.07999 * 119.99404 * 29.81450 * 12 11 9 14 14 C 1.38947 * 120.00075 * 209.81307 * 12 11 9 15 15 N 1.31412 * 120.00149 * 38.40618 * 14 12 11 16 16 Si 1.86798 * 120.00105 * 218.41089 * 14 12 11 17 17 H 1.48499 * 109.47043 * 270.00084 * 16 14 12 18 18 H 1.48500 * 109.46902 * 29.99910 * 16 14 12 19 19 H 1.48493 * 109.47108 * 149.99879 * 16 14 12 20 20 C 1.46505 * 119.99379 * 0.07835 * 11 9 7 21 21 C 1.47195 * 109.47389 * 261.00431 * 20 11 9 22 22 N 4.41688 * 73.95708 * 258.71794 * 2 1 3 23 23 C 1.53002 * 109.47251 * 239.99797 * 2 1 3 24 24 H 1.09003 * 109.47424 * 300.00079 * 1 2 3 25 25 H 1.08999 * 109.47664 * 60.00240 * 1 2 3 26 26 H 1.09002 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46878 * 60.00441 * 4 2 1 28 28 H 1.08991 * 109.47337 * 300.00044 * 4 2 1 29 29 H 1.09005 * 109.46758 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.47415 * 59.99915 * 5 4 2 31 31 H 1.09013 * 109.47038 * 300.00426 * 6 5 4 32 32 H 1.08994 * 109.47298 * 180.02562 * 6 5 4 33 33 H 1.00903 * 111.00208 * 77.01507 * 8 7 6 34 34 H 1.00905 * 111.00211 * 200.96650 * 8 7 6 35 35 H 0.97007 * 119.99766 * 5.45556 * 15 14 12 36 36 H 1.09001 * 109.47397 * 21.01074 * 20 11 9 37 37 H 1.09005 * 109.46516 * 141.00707 * 20 11 9 38 38 H 1.08996 * 109.46978 * 59.99961 * 23 2 1 39 39 H 1.08997 * 109.46879 * 299.99791 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 7 4.0596 0.6647 -1.2487 9 6 4.0727 -1.4309 -2.4794 10 8 4.8465 -2.3586 -2.3705 11 7 3.6623 -1.0354 -3.7007 12 6 4.1179 -1.6829 -4.8199 13 1 4.3800 -2.7293 -4.7692 14 6 4.2424 -0.9927 -6.0194 15 7 4.6691 0.2502 -6.0212 16 14 3.8032 -1.8316 -7.6296 17 1 5.0058 -2.5069 -8.1801 18 1 2.7373 -2.8372 -7.3892 19 1 3.3174 -0.8176 -8.5996 20 6 2.7291 0.0863 -3.8321 21 6 1.3636 -0.4307 -4.0186 22 7 0.3093 -0.8305 -4.1628 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6767 -1.7489 1.2493 28 1 1.6767 -0.2074 2.1392 29 1 3.9333 -1.2348 2.1394 30 1 3.9329 0.3072 1.2497 31 1 3.7174 -2.4694 0.0002 32 1 5.1704 -1.4415 0.0007 33 1 5.0295 0.7058 -1.5241 34 1 3.4902 1.2494 -1.8420 35 1 4.9720 0.6602 -5.1958 36 1 2.7663 0.6974 -2.9303 37 1 3.0090 0.6926 -4.6936 38 1 1.6766 -0.2075 -2.1392 39 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080905344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:14 Heat of formation + Delta-G solvation = -11.644489 kcal Electronic energy + Delta-G solvation = -21715.537988 eV Core-core repulsion = 18657.933595 eV Total energy + Delta-G solvation = -3057.604393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00025 -39.05225 -38.16426 -36.64362 -35.03314 -33.80815 -32.68601 -29.77888 -29.47867 -27.30586 -26.83503 -23.91223 -22.76884 -20.90859 -20.26314 -20.12234 -18.81344 -18.07651 -17.24421 -16.82412 -16.35928 -15.76802 -15.60086 -15.43410 -15.09691 -14.94714 -14.84789 -14.11780 -14.07095 -13.80412 -13.44081 -13.41912 -13.15710 -13.00139 -12.84109 -12.72557 -12.43176 -12.32061 -12.10579 -12.02982 -11.76690 -11.51481 -11.39254 -11.07747 -10.89882 -10.82255 -10.05591 -9.53888 -8.91986 -6.15510 1.34193 1.38173 1.51335 1.58212 1.75223 1.80661 2.30855 2.62368 2.83233 3.04590 3.36700 3.53524 3.70954 3.79292 3.87137 4.14659 4.22006 4.31548 4.36939 4.44437 4.56760 4.63390 4.75421 4.82073 4.94493 5.04573 5.07147 5.19306 5.31956 5.36890 5.41453 5.46206 5.68873 5.69592 5.85152 5.94345 6.31388 6.35875 6.47168 6.77500 7.17399 7.71372 8.31663 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.007340 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.555353 B = 3814.053625 C = 4382.634971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 H 0.096 0.904 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.080 4.080 7 C 0.123 3.877 8 N -0.801 5.801 9 C 0.422 3.578 10 O -0.607 6.607 11 N -0.449 5.449 12 C -0.451 4.451 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.848 5.848 16 Si 1.089 2.911 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.263 1.263 20 C 0.173 3.827 21 C 0.218 3.782 22 N -0.457 5.457 23 C -0.123 4.123 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.349 0.651 34 H 0.345 0.655 35 H 0.276 0.724 36 H 0.148 0.852 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 6.553 11.073 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 H 0.115 0.885 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.119 4.119 7 C 0.027 3.973 8 N -0.338 5.338 9 C 0.211 3.789 10 O -0.490 6.490 11 N -0.169 5.169 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.205 4.205 15 N -0.480 5.480 16 Si 0.911 3.089 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.187 1.187 20 C 0.045 3.955 21 C -0.100 4.100 22 N -0.137 5.137 23 C -0.161 4.161 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.373 5.770 10.053 13.227 hybrid contribution 1.032 -0.990 0.109 1.435 sum -5.341 4.779 10.162 12.435 Atomic orbital electron populations 1.21833 0.94942 1.01312 1.02239 1.21034 0.95075 1.00594 0.92749 0.88548 1.21576 0.95408 0.99942 0.97732 1.21406 0.95520 1.01752 0.95107 1.21184 0.99938 0.97346 0.93403 1.20890 0.95767 0.89477 0.91197 1.59213 1.08241 1.05698 1.60622 1.22546 0.83175 0.86965 0.86218 1.90507 1.39207 1.32596 1.86689 1.43617 1.37012 1.30808 1.05500 1.19971 1.52498 0.95755 0.89540 0.92977 1.27140 0.93091 0.96310 1.03938 1.70889 1.30365 1.15795 1.30928 0.83269 0.77451 0.75620 0.72547 1.19653 1.21535 1.18694 1.19913 0.77796 0.90543 1.07204 1.29896 0.95039 0.93523 0.91555 1.81091 1.13904 1.08003 1.10666 1.22272 0.91966 1.01015 1.00824 0.90442 0.93434 0.93998 0.93452 0.89748 0.91396 0.89619 0.94024 0.93021 0.83782 0.83544 0.91322 0.83547 0.86074 0.90998 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.08 -1.72 2.56 -10.79 -0.03 -1.74 16 3 H 0.10 1.95 7.60 -2.39 -0.02 1.94 16 4 C -0.11 -2.31 5.20 30.60 0.16 -2.15 16 5 C -0.10 -2.32 5.77 30.60 0.18 -2.14 16 6 C -0.08 -2.54 4.22 30.59 0.13 -2.41 16 7 C 0.12 4.01 0.56 2.80 0.00 4.02 16 8 N -0.80 -20.59 7.38 -154.47 -1.14 -21.73 16 9 C 0.42 19.10 6.47 87.66 0.57 19.67 16 10 O -0.61 -33.41 15.76 -3.08 -0.05 -33.46 16 11 N -0.45 -20.55 2.42 -645.41 -1.56 -22.11 16 12 C -0.45 -24.27 8.74 84.04 0.73 -23.53 16 13 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.00 0.20 4.64 84.93 0.39 0.59 16 15 N -0.85 -41.61 12.18 21.66 0.26 -41.35 16 16 Si 1.09 46.13 30.05 68.60 2.06 48.19 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 20 C 0.17 6.32 4.76 84.57 0.40 6.72 16 21 C 0.22 8.44 12.92 89.43 1.16 9.60 16 22 N -0.46 -18.64 18.54 20.01 0.37 -18.27 16 23 C -0.12 -3.69 3.32 30.61 0.10 -3.58 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 1.86 7.60 -2.39 -0.02 1.85 16 31 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.77 8.04 -2.39 -0.02 1.76 16 33 H 0.35 9.50 8.80 -89.69 -0.79 8.71 16 34 H 0.35 7.74 5.96 -89.69 -0.53 7.20 16 35 H 0.28 13.25 7.82 -92.70 -0.73 12.52 16 36 H 0.15 4.12 2.72 -2.39 -0.01 4.12 16 37 H 0.12 4.64 5.55 -2.38 -0.01 4.63 16 38 H 0.07 2.19 2.60 -2.39 -0.01 2.19 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.19 305.58 4.22 -59.97 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.19 Total: 26.12 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 4.46 Total: 2.64 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -2.07 Total: -103.47 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.46 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.06 Total: 48.19 kcal Total: -64.19 4.22 -59.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080905344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.328 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds